Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001866.1

Orthogroup ID

OG0003404

Physical Location & Seq

Genomic Coordinates Reverse (-)

51403 .. 53668

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001866.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atggtaactgaactacttccggttgatgttatcacagaacaatgctccctcactttcagaaatgaacttgggagtactgggaccaaaggggttttgattccgaggccggagactgagctccttgttgatttggtgggtgatgtggtgaaggatgaggagggttttagagagagtttgtgggtagatatggggactgggagtggggctattgctattgggattgggagggttttggggactggtgtcagagtcattgcaactgatttgagtctcactgcgatttcggttgcgggttttaatgtggagggggaggtgccaagtagtaacattgcttttatattcatcagcatgtatttgagccctggagaggcagtaattgttgctcaggaagttgtcaatacaatggctgtgaagggatatgatctgggacaagatgcattaatcaaggccaaaagcttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS Methyltransf_31 PrmA

Protein Analysis

153

Amino Acids

16.12

Weight (kDa)

4.3

Isoelectric Point (pI)

27.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64150
fragaria_vesca	FvH4_3g16091
malus_domestica	MD05G1214000.v1.1 MD05G1214300.v1.1 MD10G1197800.v1.1
prunus_persica	Prupe.4G144100_v2.0.a1
pyrus_communis	pycom10g17050
rosa_chinensis	RchiOBHm_Chr5g0027061 RchiOBHm_Chr6g0281451
rosa_laevigata	RLG00000009431 RLG00000032986
rosa_multiflora	Rmu_co7998874.1_g000001 Rmu_sc0000847.1_g000007 Rmu_sc0000882.1_g000023 Rmu_sc0001866.1_g000008 Rmu_sc0006065.1_g000029
rosa_roxburghii	Rroxscaffold_1G00052430 Rroxscaffold_2G00135560 Rroxscaffold_6G00430700
rosa_rugosa	Rorug02G0601800 Rorug05G0096900 Rorug05G0097000
rosa_samantha	Rh1CG018500 Rh1DG015600 Rh3AG054200 Rh3BG055600 Rh3CG054900 Rh4BG038500 Rh5AG190600 Rh5BG188200 Rh5CG208000 Rh5DG190000 Rh5DG541600 Rh6BG255900 Rh6DG247400
rosa_wichuraiana	Rw5G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	313
AciI	CCGC	1 cut(s)	290
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	2 cut(s)	118, 456
AluI	AGCT	2 cut(s)	118, 456
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	104, 275
AoxI	GGCC	2 cut(s)	104, 447
AseI	ATTAAT	1 cut(s)	440
Asp700I	GAANNNNTTC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	81
AsuHPI	GGTGA	2 cut(s)	149, 157
AvaII	GGWCC	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	2 cut(s)	120, 362
Bbv12I	GWGCWC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	104, 275
BmcAI	AGTACT	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	2 cut(s)	82, 315
BmrFI	CCNGG	1 cut(s)	363
BmrI	ACTGGG	2 cut(s)	87, 204
BmsI	GCATC	1 cut(s)	424
BmuI	ACTGGG	2 cut(s)	87, 204
BoxI	GACNNNNGTC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	101, 361
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	3 cut(s)	82, 199, 244
Bse3DI	GCAATG	2 cut(s)	252, 327
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	101, 361
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	2 cut(s)	252, 327
BseMII	CTCAG	2 cut(s)	105, 398
BseNI	ACTGG	3 cut(s)	82, 199, 244
BseRI	GAGGAG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	106, 449
BshNI	GGYRCC	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	20, 107
BslFI	GGGAC	4 cut(s)	94, 205, 250, 441
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	2 cut(s)	104, 275
BsmFI	GGGAC	4 cut(s)	94, 205, 250, 441
BsnI	GGCC	2 cut(s)	106, 449
Bsp1286I	GDGCHC	2 cut(s)	120, 362
Bsp143I	GATC	1 cut(s)	421
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	2 cut(s)	106, 449
BspCNI	CTCAG	2 cut(s)	106, 397
BspLI	GGNNCC	2 cut(s)	82, 315
BspT107I	GGYRCC	1 cut(s)	313
BsrDI	GCAATG	2 cut(s)	252, 327
BsrI	ACTGG	3 cut(s)	82, 199, 244
BssECI	CCNNGG	2 cut(s)	101, 361
BssMI	GATC	1 cut(s)	421
Bst2UI	CCWGG	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	114, 384
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	1 cut(s)	424
BstMAI	GTCTC	2 cut(s)	104, 275
BstMBI	GATC	1 cut(s)	421
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	1 cut(s)	352
BstPAI	GACNNNNGTC	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	106, 449
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	7 cut(s)	106, 118, 206, 360, 407, 449, 456
CviKI_1	RGCY	7 cut(s)	106, 118, 206, 360, 407, 449, 456
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	2 cut(s)	114, 384
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	2 cut(s)	120, 362
Eco47I	GGWCC	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	439
EcoT38I	GRGCYC	2 cut(s)	120, 362
FaeI	CATG	1 cut(s)	352
FaiI	YATR	4 cut(s)	188, 338, 350, 420
FaqI	GGGAC	4 cut(s)	94, 205, 250, 441
FatI	CATG	1 cut(s)	348
FauI	CCCGC	1 cut(s)	283
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	2 cut(s)	120, 362
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	2 cut(s)	106, 449
HapII	CCGG	2 cut(s)	20, 107
Hin1II	CATG	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	454
HinfI	GANTC	3 cut(s)	97, 249, 268
HpaII	CCGG	2 cut(s)	20, 107
HphI	GGTGA	2 cut(s)	149, 157
Hpy188I	TCNGA	4 cut(s)	59, 102, 248, 461
Hpy188III	TCNNGA	1 cut(s)	386
HpyAV	CCTTC	2 cut(s)	142, 406
HpyCH4V	TGCA	2 cut(s)	257, 437
HpyF3I	CTNAG	2 cut(s)	114, 384
Hsp92II	CATG	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	421
LmnI	GCTCC	2 cut(s)	50, 123
LpnPI	CCDG	9 cut(s)	33, 63, 120, 180, 225, 348, 371, 375, 410
LweI	GCATC	1 cut(s)	424
MaeIII	GTNAC	2 cut(s)	4, 323
MalI	GATC	1 cut(s)	423
MboI	GATC	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	120, 362
MluCI	AATT	1 cut(s)	375
MlyI	GAGTC	2 cut(s)	258, 277
MnlI	CCTC	8 cut(s)	59, 96, 148, 151, 219, 298, 304, 361
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	15
MseI	TTAA	2 cut(s)	297, 440
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	2 cut(s)	20, 107
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
NdeII	GATC	1 cut(s)	421
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	2 cut(s)	82, 315
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	97
PleI	GAGTC	2 cut(s)	257, 276
PpsI	GAGTC	2 cut(s)	257, 276
PshAI	GACNNNNGTC	1 cut(s)	242
PshBI	ATTAAT	1 cut(s)	440
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	82, 315
PspPI	GGNCC	1 cut(s)	81
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	297, 440
Sau3AI	GATC	1 cut(s)	421
Sau96I	GGNCC	1 cut(s)	81
ScaI	AGTACT	1 cut(s)	76
SchI	GAGTC	2 cut(s)	258, 277
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	2 cut(s)	120, 362
SetI	ASST	3 cut(s)	120, 315, 458
SfaNI	GCATC	1 cut(s)	424
SinI	GGWCC	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	347
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	361
TasI	AATT	1 cut(s)	375
TatI	WGTACW	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	2 cut(s)	297, 440
Tru9I	TTAA	2 cut(s)	297, 440
TscAI	CASTG	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	78, 331
TspRI	CASTG	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	81
VspI	ATTAAT	1 cut(s)	440
XceI	RCATGY	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	76
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.