Rroxscaffold_6G00430700

Release factor glutamine

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
50837207 .. 50838824
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430700.1

Sequence Viewer

Length: 255 bp
ATGCACCTGATGGAGATGAGCCTTTGGCTTTGGACATGGGGAAGGGTCAAGTATGATTCAATGGGGAGAGCATTGGAAGATACTGGACTATTCATGCGAATGGTAATTGGGGTTTTGATTCCGACGCCGAAGACTGAGCTCATTGTTGGTTTGGTGGGTGATGTGGTGAAGGATGAGGAGGGTTTAAGAGAGGGTTTGTGGGCAGATTTGGGGACTGGGAGTGGGGCTATTGCTATTGGGATTGGGAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.23

Weight (kDa)

4.94

Isoelectric Point (pI)

28.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 125
AgsI TTSAA 1 cut(s) 60
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw21I GWGCWC 1 cut(s) 141
AsuHPI GGTGA 2 cut(s) 170, 178
BanII GRGCYC 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 141
BccI CCATC 1 cut(s) 4
BmrI ACTGGG 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 88, 220
BseGI GGATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 2 cut(s) 88, 220
BseRI GAGGAG 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 141
BslFI GGGAC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 127
BsrI ACTGG 2 cut(s) 88, 220
BssNI GRCGYC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 178
CseI GACGC 1 cut(s) 133
CviAII CATG 2 cut(s) 36, 94
CviJI RGCY 5 cut(s) 21, 28, 139, 227, 250
CviKI_1 RGCY 5 cut(s) 21, 28, 139, 227, 250
DdeI CTNAG 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 141
Eco53kI GAGCTC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 141
FaeI CATG 2 cut(s) 39, 97
FaiI YATR 3 cut(s) 37, 54, 95
FaqI GGGAC 1 cut(s) 226
FatI CATG 2 cut(s) 35, 93
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 141
HgaI GACGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 2 cut(s) 39, 97
HinfI GANTC 2 cut(s) 56, 118
HphI GGTGA 2 cut(s) 170, 178
Hpy188I TCNGA 1 cut(s) 123
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 2 cut(s) 36, 163
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 2 cut(s) 39, 97
LpnPI CCDG 3 cut(s) 20, 69, 201
MboII GAAGA 2 cut(s) 89, 142
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 4 cut(s) 169, 172, 184, 240
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 98
NlaIII CATG 2 cut(s) 39, 97
PfeI GAWTC 2 cut(s) 56, 118
Psp124BI GAGCTC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 98
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 185
SduI GDGCHC 1 cut(s) 141
SetI ASST 2 cut(s) 9, 141
SgeI CNNG 6 cut(s) 19, 48, 61, 96, 106, 228
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 1 cut(s) 105
SstI GAGCTC 1 cut(s) 141
TasI AATT 1 cut(s) 105
TfiI GAWTC 2 cut(s) 56, 118
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.