Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003404

Physical Location & Seq

Genomic Coordinates Reverse (-)

46917456 .. 46921105

Gene Structure 3650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG255900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGGATGCGACGGCATGGCGTATAGTCGGGACTCCGTATCCAAATTTCCAGAACGGGTTTTGATTCCGAGGCCGGAGACTGAGCTCATTGTTGATTTGGTGGGTGATGTGGTGAAGGATGAGGAGGGTTTCAGAGAGGGTTTGTGGGCAGATTTGGGGACTGGGAGTGGGGCTATTGCTATTGGGATTGGGAGGGTTTTGGGGACTGGTGTCAGAGTCATTGCAACTGATTTGAGTCTCGCTGCGATTTTGATTGCGGGTTTTAATGTGGAGAGGGAGAAGGGAATTGGTATTGACATATATTTGAGCCCTGGAGAGGCAGTAATTGTTGCTCAGGAAGTTGTCAATACAATGGCTGCGAAGGGATATGATCTGGGACAAGATGCATTAATCACGGCCAAAAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS Methyltransf_31 PrmA

Protein Analysis

136

Amino Acids

14.28

Weight (kDa)

4.45

Isoelectric Point (pI)

22.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64150
fragaria_vesca	FvH4_3g16091
malus_domestica	MD05G1214000.v1.1 MD05G1214300.v1.1 MD10G1197800.v1.1
prunus_persica	Prupe.4G144100_v2.0.a1
pyrus_communis	pycom10g17050
rosa_chinensis	RchiOBHm_Chr5g0027061 RchiOBHm_Chr6g0281451
rosa_laevigata	RLG00000009431 RLG00000032986
rosa_multiflora	Rmu_co7998874.1_g000001 Rmu_sc0000847.1_g000007 Rmu_sc0000882.1_g000023 Rmu_sc0001866.1_g000008 Rmu_sc0006065.1_g000029
rosa_roxburghii	Rroxscaffold_1G00052430 Rroxscaffold_2G00135560 Rroxscaffold_6G00430700
rosa_rugosa	Rorug02G0601800 Rorug05G0096900 Rorug05G0097000
rosa_samantha	Rh1CG018500 Rh1DG015600 Rh3AG054200 Rh3BG055600 Rh3CG054900 Rh4BG038500 Rh5AG190600 Rh5BG188200 Rh5CG208000 Rh5DG190000 Rh5DG541600 Rh6BG255900 Rh6DG247400
rosa_wichuraiana	Rw5G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	2 cut(s)	85, 405
AluI	AGCT	2 cut(s)	85, 405
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	71, 242
AoxI	GGCC	2 cut(s)	71, 396
ApeKI	GCWGC	2 cut(s)	242, 356
ApoI	RAATTY	1 cut(s)	44
AseI	ATTAAT	1 cut(s)	389
AsuHPI	GGTGA	2 cut(s)	116, 124
BanII	GRGCYC	2 cut(s)	87, 311
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	229, 343
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	312
BciVI	GTATCC	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	71, 242
BfuI	GTATCC	1 cut(s)	49
BisI	GCNGC	2 cut(s)	243, 357
BlsI	GCNGC	2 cut(s)	244, 358
Bme1390I	CCNGG	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	373
BmuI	ACTGGG	1 cut(s)	171
BoxI	GACNNNNGTC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	68, 310
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	2 cut(s)	166, 211
Bse3DI	GCAATG	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	68, 310
BseGI	GGATG	2 cut(s)	11, 124
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	2 cut(s)	72, 347
BseNI	ACTGG	2 cut(s)	166, 211
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	229, 343
BshFI	GGCC	2 cut(s)	73, 398
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	4 cut(s)	44, 172, 217, 390
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	71, 242
BsmFI	GGGAC	4 cut(s)	44, 172, 217, 390
BsnI	GGCC	2 cut(s)	73, 398
Bsp1286I	GDGCHC	2 cut(s)	87, 311
Bsp143I	GATC	1 cut(s)	370
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	2 cut(s)	73, 398
BspCNI	CTCAG	2 cut(s)	73, 346
BsrDI	GCAATG	1 cut(s)	219
BsrI	ACTGG	2 cut(s)	166, 211
BssECI	CCNNGG	2 cut(s)	68, 310
BssMI	GATC	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	312
BstDEI	CTNAG	2 cut(s)	81, 333
BstF5I	GGATG	2 cut(s)	11, 124
BstKTI	GATC	1 cut(s)	373
BstMAI	GTCTC	2 cut(s)	71, 242
BstMBI	GATC	1 cut(s)	370
BstNI	CCWGG	1 cut(s)	312
BstPAI	GACNNNNGTC	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	229, 343
BsuI	GTATCC	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	73, 398
BtsCI	GGATG	2 cut(s)	11, 124
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	7 cut(s)	73, 85, 173, 309, 356, 398, 405
CviKI_1	RGCY	7 cut(s)	73, 85, 173, 309, 356, 398, 405
DdeI	CTNAG	2 cut(s)	81, 333
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	396
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	2 cut(s)	87, 311
Eco53kI	GAGCTC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	310
EcoT22I	ATGCAT	1 cut(s)	388
EcoT38I	GRGCYC	2 cut(s)	87, 311
FaeI	CATG	1 cut(s)	19
FaiI	YATR	5 cut(s)	17, 24, 299, 301, 369
FaqI	GGGAC	4 cut(s)	44, 172, 217, 390
FatI	CATG	1 cut(s)	15
FauI	CCCGC	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	243, 357
FokI	GGATG	2 cut(s)	18, 131
FriOI	GRGCYC	2 cut(s)	87, 311
Fsp4HI	GCNGC	2 cut(s)	243, 357
GluI	GCNGC	2 cut(s)	243, 357
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	73, 398
HapII	CCGG	1 cut(s)	74
Hin1II	CATG	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	4 cut(s)	32, 64, 216, 235
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	2 cut(s)	116, 124
Hpy188I	TCNGA	4 cut(s)	69, 134, 215, 410
Hpy188III	TCNNGA	3 cut(s)	29, 50, 335
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	109, 274, 355
HpyCH4V	TGCA	2 cut(s)	224, 386
HpyF3I	CTNAG	2 cut(s)	81, 333
Hsp92II	CATG	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	370
LpnPI	CCDG	8 cut(s)	63, 87, 147, 192, 297, 320, 324, 359
Lsp1109I	GCAGC	2 cut(s)	229, 343
LweI	GCATC	1 cut(s)	373
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	87, 311
MluCI	AATT	3 cut(s)	44, 285, 324
MlyI	GAGTC	3 cut(s)	26, 225, 244
MnlI	CCTC	7 cut(s)	63, 115, 118, 130, 186, 267, 310
Mph1103I	ATGCAT	1 cut(s)	388
MseI	TTAA	2 cut(s)	264, 389
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	2 cut(s)	244, 358
PleI	GAGTC	3 cut(s)	26, 224, 243
PpsI	GAGTC	3 cut(s)	26, 224, 243
PshAI	GACNNNNGTC	1 cut(s)	209
PshBI	ATTAAT	1 cut(s)	389
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	264, 389
SatI	GCNGC	2 cut(s)	243, 357
Sau3AI	GATC	1 cut(s)	370
SchI	GAGTC	3 cut(s)	26, 225, 244
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	2 cut(s)	87, 311
SetI	ASST	2 cut(s)	87, 407
SfaNI	GCATC	1 cut(s)	373
Sse9I	AATT	3 cut(s)	44, 285, 324
SsiI	CCGC	1 cut(s)	257
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	310
TasI	AATT	3 cut(s)	44, 285, 324
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	264, 389
Tru9I	TTAA	2 cut(s)	264, 389
TseI	GCWGC	2 cut(s)	242, 356
TspGWI	ACGGA	1 cut(s)	25
VspI	ATTAAT	1 cut(s)	389
XapI	RAATTY	1 cut(s)	44
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.