Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003404

Physical Location & Seq

Genomic Coordinates Forward (+)

2657043 .. 2660460

Gene Structure 3418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG015600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTATGTTCAAGAAGGGGTTTTGATTCCGAGGCCAGAGACTGAGCTCATTGTTGATTTGGTGGGTGATGTGGTGAAGGATGAAGAGGGTTTCAGAGAGGGTTTGTGGGCAGATTTGGGGATTGGGAGTGGGGCTATTGCTATTGGGATTGGGAGGGTTTTGGGGACTGGTGTCAAAGTCATTGCAACTGATTTGAGTCACACTGCGACTTCGTTTGTGGGTTTTAATGTGGAGAGGGAGGTATGGTTTACAGGCTGCCCCATGCATTACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS Methyltransf_31 PrmA

Protein Analysis

91

Amino Acids

9.82

Weight (kDa)

4.52

Isoelectric Point (pI)

23.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64150
fragaria_vesca	FvH4_3g16091
malus_domestica	MD05G1214000.v1.1 MD05G1214300.v1.1 MD10G1197800.v1.1
prunus_persica	Prupe.4G144100_v2.0.a1
pyrus_communis	pycom10g17050
rosa_chinensis	RchiOBHm_Chr5g0027061 RchiOBHm_Chr6g0281451
rosa_laevigata	RLG00000009431 RLG00000032986
rosa_multiflora	Rmu_co7998874.1_g000001 Rmu_sc0000847.1_g000007 Rmu_sc0000882.1_g000023 Rmu_sc0001866.1_g000008 Rmu_sc0006065.1_g000029
rosa_roxburghii	Rroxscaffold_1G00052430 Rroxscaffold_2G00135560 Rroxscaffold_6G00430700
rosa_rugosa	Rorug02G0601800 Rorug05G0096900 Rorug05G0097000
rosa_samantha	Rh1CG018500 Rh1DG015600 Rh3AG054200 Rh3BG055600 Rh3CG054900 Rh4BG038500 Rh5AG190600 Rh5BG188200 Rh5CG208000 Rh5DG190000 Rh5DG541600 Rh6BG255900 Rh6DG247400
rosa_wichuraiana	Rw5G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	11
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	77, 85
BanII	GRGCYC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	32
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
BoxI	GACNNNNGTC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	242
BshFI	GGCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	32
BstPAI	GACNNNNGTC	1 cut(s)	170
BstV1I	GCAGC	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
CaiI	CAGNNNCTG	1 cut(s)	41
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	4 cut(s)	34, 46, 134, 255
CviKI_1	RGCY	4 cut(s)	34, 46, 134, 255
DdeI	CTNAG	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	1 cut(s)	265
FaiI	YATR	3 cut(s)	6, 244, 263
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	256
HaeIII	GGCC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	265
HinfI	GANTC	2 cut(s)	25, 196
HphI	GGTGA	2 cut(s)	77, 85
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	2 cut(s)	30, 95
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	1 cut(s)	249
HpyAV	CCTTC	2 cut(s)	8, 70
HpyCH4V	TGCA	2 cut(s)	185, 265
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	265
LpnPI	CCDG	3 cut(s)	48, 153, 237
Lsp1109I	GCAGC	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	197
MboII	GAAGA	1 cut(s)	95
MhlI	GDGCHC	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	6 cut(s)	24, 79, 91, 147, 228, 232
Mph1103I	ATGCAT	1 cut(s)	267
MseI	TTAA	1 cut(s)	225
NlaIII	CATG	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	197
NsiI	ATGCAT	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	257
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PshAI	GACNNNNGTC	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	41
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	2 cut(s)	48, 243
SgeI	CNNG	5 cut(s)	23, 42, 47, 180, 264
SstI	GAGCTC	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	208
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.