Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003404

Physical Location & Seq

Genomic Coordinates Reverse (-)

43438299 .. 43439836

Gene Structure 1538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG247400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGGGAGAGCATTGGAAGATACTGGACTATTCATGCTAATGGTAATTGAAGGGGTTTTGATTCCGAGGCCGGAGACTGAACTCATTGTTGATTTGGTGGGTGATGTGGTGAAGGATGAGGAGGGTTTCAGAGAGGGTTTGTGGGCAGATTTGGGGACTGGGAGTGGGGCTATTGCTATTGGGATTGGGAGGGTTTTGGGGACTGGTGTCAGAGTCATTGCAACTGATTTGAGTCTCACTGCGATTTTGATTGCGGGTTTTAATGTGGAGAGGGAGAAGGGAATTGGTATTGAGTGTCGAAACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS Methyltransf_31 PrmA

Protein Analysis

102

Amino Acids

10.78

Weight (kDa)

4.43

Isoelectric Point (pI)

21.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64150
fragaria_vesca	FvH4_3g16091
malus_domestica	MD05G1214000.v1.1 MD05G1214300.v1.1 MD10G1197800.v1.1
prunus_persica	Prupe.4G144100_v2.0.a1
pyrus_communis	pycom10g17050
rosa_chinensis	RchiOBHm_Chr5g0027061 RchiOBHm_Chr6g0281451
rosa_laevigata	RLG00000009431 RLG00000032986
rosa_multiflora	Rmu_co7998874.1_g000001 Rmu_sc0000847.1_g000007 Rmu_sc0000882.1_g000023 Rmu_sc0001866.1_g000008 Rmu_sc0006065.1_g000029
rosa_roxburghii	Rroxscaffold_1G00052430 Rroxscaffold_2G00135560 Rroxscaffold_6G00430700
rosa_rugosa	Rorug02G0601800 Rorug05G0096900 Rorug05G0097000
rosa_samantha	Rh1CG018500 Rh1DG015600 Rh3AG054200 Rh3BG055600 Rh3CG054900 Rh4BG038500 Rh5AG190600 Rh5BG188200 Rh5CG208000 Rh5DG190000 Rh5DG541600 Rh6BG255900 Rh6DG247400
rosa_wichuraiana	Rw5G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	50
Alw26I	GTCTC	2 cut(s)	68, 239
AoxI	GGCC	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	113, 121
BcoDI	GTCTC	2 cut(s)	68, 239
BmrI	ACTGGG	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	168
BoxI	GACNNNNGTC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	65
Bse1I	ACTGG	3 cut(s)	28, 163, 208
Bse3DI	GCAATG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	216
BseNI	ACTGG	3 cut(s)	28, 163, 208
BseRI	GAGGAG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	2 cut(s)	169, 214
BsmAI	GTCTC	2 cut(s)	68, 239
BsmFI	GGGAC	2 cut(s)	169, 214
BsnI	GGCC	1 cut(s)	70
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	3 cut(s)	28, 163, 208
BssECI	CCNNGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	121
BstMAI	GTCTC	2 cut(s)	68, 239
BstPAI	GACNNNNGTC	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	2 cut(s)	70, 170
CviKI_1	RGCY	2 cut(s)	70, 170
FaeI	CATG	1 cut(s)	37
FaiI	YATR	1 cut(s)	35
FaqI	GGGAC	2 cut(s)	169, 214
FatI	CATG	1 cut(s)	33
FauI	CCCGC	1 cut(s)	247
FokI	GGATG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	1 cut(s)	37
HinfI	GANTC	3 cut(s)	61, 213, 232
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	2 cut(s)	113, 121
Hpy188I	TCNGA	3 cut(s)	66, 131, 212
HpyAV	CCTTC	3 cut(s)	44, 106, 271
HpyCH4V	TGCA	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	37
LpnPI	CCDG	4 cut(s)	9, 84, 144, 189
MboII	GAAGA	1 cut(s)	29
MluCI	AATT	2 cut(s)	45, 282
MlyI	GAGTC	2 cut(s)	222, 241
MnlI	CCTC	6 cut(s)	60, 112, 115, 127, 183, 264
MseI	TTAA	1 cut(s)	261
MslI	CAYNNNNRTG	1 cut(s)	38
MspI	CCGG	1 cut(s)	71
NlaIII	CATG	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	61
PleI	GAGTC	2 cut(s)	221, 240
PpsI	GAGTC	2 cut(s)	221, 240
PshAI	GACNNNNGTC	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	261
SchI	GAGTC	2 cut(s)	222, 241
SgeI	CNNG	7 cut(s)	36, 46, 78, 83, 171, 216, 267
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	45, 282
SsiI	CCGC	1 cut(s)	254
TaqI	TCGA	1 cut(s)	298
TasI	AATT	2 cut(s)	45, 282
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.