Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003404

Physical Location & Seq

Genomic Coordinates Reverse (-)

20973585 .. 20976481

Gene Structure 2897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG208000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAAGCTAAGCCTCACTCCAAAACTCTCAACCTTCCTTAAACCCTCCCTTGCTTCTACTCCTCTCCGTCGCTCTATTTGCTCTTCTTCACCATCACCACCACCACCACCACCCATTTCTCTAAAACCCCAAACCCCTCTCTTTCTCAGGCCTCCCATTCACTCAGCCACCTCCTCAGACCTCCAGCAATGGCAGGACTGGGCCAAAACCCTCGCTTCCTCAGTTGGGTCGACCTTCGCCGACTCAGACAACGGCCCCGACTCGACCCTTTTGCTCAGAGAGCTCAACTGGCTCGTAGACGACGCAGTTCAACAAGGAATCGAAAATGGTCAAAGAAAAATTAGATTGAGAGTGAGTCTGGAGGAGCTGTACTTGTTGTGGAAGCAGAGGATTGAAGAGAGGAAGCCCTTTCAGTACATTGTTGGGTGTGAGCATTGGAGGGAGCTGGTGCTGTGTGTTCAAGAAGGGGTTTTGATTCCGAGGCCGGAGACTGAGCTCATTGTGGATTTGGTGGGTGATGTGGTGAAGGGTGAGGAGGGTTTAAGAGAGGGTTTATGGGCAGATTTGGGGACTGGGAGTGGGGCTATTGCTATTGGGATTGGGAGGGTTTTGGGGACTGGTGGTGGCAGAGTCATTGCAACTGATTTGAGTCCCACTGCAATTTCGGTTGCGGGGTTTAATGTGGAGAGGTATGGTTTGCAGGATGTAGTGGAGCTAAGGCAAGGATCTTGGTTTGACCCATTAAAGGATGTGGAAGGTAAACTTGCGGGGTTCGTAAGTAATCCACCGTACATACCAAGTGACAATATCTCGGGGCTACAAGTTGAAGTTGGAAGACATGAACCCAGAGTTGCACTGGATGGCGGTGTTGATGGCATGGATGATCTTTTACATCTTTGCAAAGGGGCTGCTTCCATGTTGAAACCTGGTGGATTTTTTGCTTTTGAGACAAATGGTGAGAAGCAGTGCAAGTATCTTGTGGAGTACATGGAAAATGAGGCTAGAGGCAGCTTTTGTAATTTGAGTATAATTCCTGATTTTGCGGGTAGTCATAGATTTGTTACCGGATTCCATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS Methyltransf_31 PrmA

Protein Analysis

359

Amino Acids

39.26

Weight (kDa)

5.4

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64150
fragaria_vesca	FvH4_3g16091
malus_domestica	MD05G1214000.v1.1 MD05G1214300.v1.1 MD10G1197800.v1.1
prunus_persica	Prupe.4G144100_v2.0.a1
pyrus_communis	pycom10g17050
rosa_chinensis	RchiOBHm_Chr5g0027061 RchiOBHm_Chr6g0281451
rosa_laevigata	RLG00000009431 RLG00000032986
rosa_multiflora	Rmu_co7998874.1_g000001 Rmu_sc0000847.1_g000007 Rmu_sc0000882.1_g000023 Rmu_sc0001866.1_g000008 Rmu_sc0006065.1_g000029
rosa_roxburghii	Rroxscaffold_1G00052430 Rroxscaffold_2G00135560 Rroxscaffold_6G00430700
rosa_rugosa	Rorug02G0601800 Rorug05G0096900 Rorug05G0097000
rosa_samantha	Rh1CG018500 Rh1DG015600 Rh3AG054200 Rh3BG055600 Rh3CG054900 Rh4BG038500 Rh5AG190600 Rh5BG188200 Rh5CG208000 Rh5DG190000 Rh5DG541600 Rh6BG255900 Rh6DG247400
rosa_wichuraiana	Rw5G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	230, 297
AciI	CCGC	4 cut(s)	671, 767, 864, 1043
AclWI	GGATC	1 cut(s)	733
AfaI	GTAC	4 cut(s)	371, 416, 791, 986
AfiI	CCNNNNNNNGG	2 cut(s)	225, 745
AgsI	TTSAA	5 cut(s)	311, 395, 461, 827, 922
AjnI	CCWGG	1 cut(s)	925
AluBI	AGCT	7 cut(s)	7, 283, 367, 445, 496, 715, 1011
AluI	AGCT	7 cut(s)	7, 283, 367, 445, 496, 715, 1011
Alw21I	GWGCWC	2 cut(s)	285, 498
Alw26I	GTCTC	2 cut(s)	482, 941
AlwI	GGATC	1 cut(s)	733
Ama87I	CYCGRG	1 cut(s)	811
AoxI	GGCC	4 cut(s)	149, 201, 253, 482
ApeKI	GCWGC	2 cut(s)	908, 1008
AspS9I	GGNCC	2 cut(s)	201, 254
AsuHPI	GGTGA	6 cut(s)	81, 87, 527, 535, 542, 968
AvaI	CYCGRG	1 cut(s)	811
BanII	GRGCYC	2 cut(s)	285, 498
BbsI	GAAGAC	1 cut(s)	841
Bbv12I	GWGCWC	2 cut(s)	285, 498
BbvI	GCAGC	2 cut(s)	895, 1020
BccI	CCATC	3 cut(s)	100, 854, 866
BceAI	ACGGC	1 cut(s)	268
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BciT130I	CCWGG	1 cut(s)	927
BcoDI	GTCTC	2 cut(s)	482, 941
BfaI	CTAG	1 cut(s)	1002
BisI	GCNGC	2 cut(s)	909, 1009
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	2 cut(s)	910, 1010
Bme1390I	CCNGG	1 cut(s)	927
BmeT110I	CYCGRG	1 cut(s)	811
BmgT120I	GGNCC	2 cut(s)	201, 254
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	927
BmrI	ACTGGG	2 cut(s)	208, 582
BmuI	ACTGGG	2 cut(s)	208, 582
BpiI	GAAGAC	1 cut(s)	841
BpmI	CTGGAG	2 cut(s)	167, 380
Bpu10I	CCTNAGC	1 cut(s)	716
Bpu1102I	GCTNAGC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	479
BsaWI	WCCGGW	1 cut(s)	1064
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 745
Bse1I	ACTGG	5 cut(s)	203, 293, 577, 622, 861
Bse3DI	GCAATG	2 cut(s)	194, 633
BseBI	CCWGG	1 cut(s)	927
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	4 cut(s)	709, 754, 865, 886
BseLI	CCNNNNNNNGG	2 cut(s)	225, 745
BseMI	GCAATG	2 cut(s)	194, 633
BseMII	CTCAG	7 cut(s)	160, 177, 189, 234, 258, 289, 483
BseNI	ACTGG	5 cut(s)	203, 293, 577, 622, 861
BseRI	GAGGAG	4 cut(s)	51, 163, 377, 548
BseXI	GCAGC	2 cut(s)	895, 1020
BshFI	GGCC	4 cut(s)	151, 203, 255, 484
BsiHKAI	GWGCWC	2 cut(s)	285, 498
BsiHKCI	CYCGRG	1 cut(s)	811
BsiSI	CCGG	2 cut(s)	485, 1065
BslFI	GGGAC	3 cut(s)	583, 628, 636
BslI	CCNNNNNNNGG	2 cut(s)	225, 745
BsmAI	GTCTC	2 cut(s)	482, 941
BsmFI	GGGAC	3 cut(s)	583, 628, 636
BsnI	GGCC	4 cut(s)	151, 203, 255, 484
BsoBI	CYCGRG	1 cut(s)	811
Bsp1286I	GDGCHC	2 cut(s)	285, 498
Bsp143I	GATC	2 cut(s)	725, 883
Bsp1720I	GCTNAGC	1 cut(s)	8
BspACI	CCGC	4 cut(s)	671, 767, 864, 1043
BspANI	GGCC	4 cut(s)	151, 203, 255, 484
BspCNI	CTCAG	7 cut(s)	159, 176, 188, 233, 257, 288, 484
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	733
BspQI	GCTCTTC	1 cut(s)	88
BsrDI	GCAATG	2 cut(s)	194, 633
BsrI	ACTGG	5 cut(s)	203, 293, 577, 622, 861
BssECI	CCNNGG	1 cut(s)	479
BssMI	GATC	2 cut(s)	725, 883
Bst2UI	CCWGG	1 cut(s)	927
Bst4CI	ACNGT	1 cut(s)	789
Bst6I	CTCTTC	2 cut(s)	88, 390
BstDEI	CTNAG	9 cut(s)	8, 146, 163, 175, 220, 244, 275, 492, 716
BstF5I	GGATG	4 cut(s)	709, 754, 865, 886
BstKTI	GATC	2 cut(s)	728, 886
BstMAI	GTCTC	2 cut(s)	482, 941
BstMBI	GATC	2 cut(s)	725, 883
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 280, 289
BstNI	CCWGG	1 cut(s)	927
BstSCI	CCNGG	1 cut(s)	925
BstV1I	GCAGC	2 cut(s)	895, 1020
BstV2I	GAAGAC	1 cut(s)	841
BstX2I	RGATCY	1 cut(s)	725
BstYI	RGATCY	1 cut(s)	725
BsuRI	GGCC	4 cut(s)	151, 203, 255, 484
BtsCI	GGATG	4 cut(s)	709, 754, 865, 886
BtsI	GCAGTG	2 cut(s)	654, 971
BtsIMutI	CAGTG	3 cut(s)	654, 854, 971
Cfr13I	GGNCC	2 cut(s)	201, 254
CseI	GACGC	1 cut(s)	311
CsiI	ACCWGGT	1 cut(s)	925
Csp6I	GTAC	4 cut(s)	370, 415, 790, 985
CviAII	CATG	4 cut(s)	839, 877, 916, 988
CviQI	GTAC	4 cut(s)	370, 415, 790, 985
DdeI	CTNAG	9 cut(s)	8, 146, 163, 175, 220, 244, 275, 492, 716
DpnI	GATC	2 cut(s)	727, 885
DpnII	GATC	2 cut(s)	725, 883
Eam1104I	CTCTTC	2 cut(s)	88, 390
EarI	CTCTTC	2 cut(s)	88, 390
Ecl136II	GAGCTC	2 cut(s)	283, 496
Eco147I	AGGCCT	1 cut(s)	151
Eco24I	GRGCYC	2 cut(s)	285, 498
Eco53kI	GAGCTC	2 cut(s)	283, 496
Eco88I	CYCGRG	1 cut(s)	811
EcoICRI	GAGCTC	2 cut(s)	283, 496
EcoRII	CCWGG	1 cut(s)	925
EcoT38I	GRGCYC	2 cut(s)	285, 498
FaeI	CATG	4 cut(s)	842, 880, 919, 991
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	3 cut(s)	583, 628, 636
FatI	CATG	4 cut(s)	838, 876, 915, 987
FauI	CCCGC	3 cut(s)	664, 760, 1036
FblI	GTMKAC	2 cut(s)	230, 297
Fnu4HI	GCNGC	2 cut(s)	909, 1009
FokI	GGATG	4 cut(s)	716, 761, 872, 893
FriOI	GRGCYC	2 cut(s)	285, 498
Fsp4HI	GCNGC	2 cut(s)	909, 1009
FspBI	CTAG	1 cut(s)	1002
GluI	GCNGC	2 cut(s)	909, 1009
GsuI	CTGGAG	2 cut(s)	167, 380
HaeIII	GGCC	4 cut(s)	151, 203, 255, 484
HapII	CCGG	2 cut(s)	485, 1065
HgaI	GACGC	1 cut(s)	311
Hin1II	CATG	4 cut(s)	842, 880, 919, 991
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	8 cut(s)	242, 260, 318, 355, 475, 630, 649, 1068
HpaII	CCGG	2 cut(s)	485, 1065
HphI	GGTGA	6 cut(s)	81, 87, 527, 535, 542, 968
Hpy166II	GTNNAC	3 cut(s)	231, 298, 761
Hpy188I	TCNGA	4 cut(s)	178, 247, 278, 480
Hpy188III	TCNNGA	3 cut(s)	359, 461, 1034
Hpy8I	GTNNAC	3 cut(s)	231, 298, 761
Hpy99I	CGWCG	2 cut(s)	72, 305
HpyAV	CCTTC	5 cut(s)	43, 244, 458, 520, 749
HpyCH4III	ACNGT	1 cut(s)	789
HpyCH4V	TGCA	6 cut(s)	638, 659, 700, 854, 900, 969
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 280, 289
HpyF3I	CTNAG	9 cut(s)	8, 146, 163, 175, 220, 244, 275, 492, 716
Hsp92II	CATG	4 cut(s)	842, 880, 919, 991
Kzo9I	GATC	2 cut(s)	725, 883
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	3 cut(s)	364, 442, 712
Lsp1109I	GCAGC	2 cut(s)	895, 1020
MabI	ACCWGGT	1 cut(s)	925
MaeI	CTAG	1 cut(s)	1002
MaeIII	GTNAC	2 cut(s)	800, 1060
MalI	GATC	2 cut(s)	727, 885
MboI	GATC	2 cut(s)	725, 883
MboII	GAAGA	4 cut(s)	75, 78, 407, 846
MflI	RGATCY	1 cut(s)	725
MhlI	GDGCHC	2 cut(s)	285, 498
MluCI	AATT	4 cut(s)	339, 660, 1018, 1029
MlyI	GAGTC	5 cut(s)	236, 254, 364, 639, 658
MmeI	TCCRAC	1 cut(s)	811
MseI	TTAA	4 cut(s)	39, 542, 678, 743
MspI	CCGG	2 cut(s)	485, 1065
MspR9I	CCNGG	1 cut(s)	927
MvaI	CCWGG	1 cut(s)	927
MwoI	GCNNNNNNNGC	3 cut(s)	78, 280, 289
NdeII	GATC	2 cut(s)	725, 883
NlaIII	CATG	4 cut(s)	842, 880, 919, 991
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	800
PceI	AGGCCT	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	88
PfeI	GAWTC	3 cut(s)	318, 475, 1068
PkrI	GCNGC	2 cut(s)	910, 1010
PleI	GAGTC	5 cut(s)	236, 254, 363, 638, 657
PpsI	GAGTC	5 cut(s)	236, 254, 363, 638, 657
Psp124BI	GAGCTC	2 cut(s)	285, 498
Psp6I	CCWGG	1 cut(s)	925
PspGI	CCWGG	1 cut(s)	925
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	2 cut(s)	201, 254
PsuI	RGATCY	1 cut(s)	725
RsaI	GTAC	4 cut(s)	371, 416, 791, 986
RsaNI	GTAC	4 cut(s)	370, 415, 790, 985
SacI	GAGCTC	2 cut(s)	285, 498
SalI	GTCGAC	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	4 cut(s)	39, 542, 678, 743
SatI	GCNGC	2 cut(s)	909, 1009
Sau3AI	GATC	2 cut(s)	725, 883
Sau96I	GGNCC	2 cut(s)	201, 254
SchI	GAGTC	5 cut(s)	236, 254, 364, 639, 658
ScrFI	CCNGG	1 cut(s)	927
SduI	GDGCHC	2 cut(s)	285, 498
SexAI	ACCWGGT	1 cut(s)	925
Sse9I	AATT	4 cut(s)	339, 660, 1018, 1029
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	4 cut(s)	671, 767, 864, 1043
SspMI	CTAG	1 cut(s)	1002
SstI	GAGCTC	2 cut(s)	285, 498
StuI	AGGCCT	1 cut(s)	151
StyD4I	CCNGG	1 cut(s)	925
TaaI	ACNGT	1 cut(s)	789
TaqI	TCGA	3 cut(s)	230, 263, 321
TasI	AATT	4 cut(s)	339, 660, 1018, 1029
TatI	WGTACW	3 cut(s)	369, 414, 984
TfiI	GAWTC	3 cut(s)	318, 475, 1068
Tru1I	TTAA	4 cut(s)	39, 542, 678, 743
Tru9I	TTAA	4 cut(s)	39, 542, 678, 743
TscAI	CASTG	3 cut(s)	661, 861, 971
TseFI	GTSAC	1 cut(s)	800
TseI	GCWGC	2 cut(s)	908, 1008
Tsp45I	GTSAC	1 cut(s)	800
TspDTI	ATGAA	2 cut(s)	17, 855
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	3 cut(s)	661, 861, 971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	853
XmiI	GTMKAC	2 cut(s)	230, 297
XspI	CTAG	1 cut(s)	1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.