Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003404

Physical Location & Seq

Genomic Coordinates Reverse (-)

10135122 .. 10136669

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16091.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAAGCTAAGCCTCACTCCAAAACTCTCCACCTTCCTTAAACCCTCCTCCGCCCTTCCTCCTACTCATCTCCGCCGCTCCATTTCCTCTTCCTCACTCTCACTCTCACCACCGCCACCACAACCAACTTCTCCAAAACCCAAAACCCCTCTCTTTCTCCGACCACCCATCCACCCCGCCACCGCCTCAGACCTCCAGCAATGGCACCACTGGGCCAAGACCCTCGCTTCCTCAGTTGGGTCCTCCTTCGCCGACTCCGACAACGGCCCCGACTCCACCCTCTTGCTCAGAGAGCTCAAATGGCTCGTAGATGACGCAGTTCATCAAGAAAAGCTCGAAAACGGTGAAGGAAATATTAGACTGAGAGTGAGCCTGGAGGAGATGTACTTGCTGTGGAAGCAGAGGATTGAAGAGAGGAGGCCTTTTCAGTATGTTGTGGGGTGTCAGCATTGGAGGGAGCTGGTGCTGTGTGTTCAAGAAGGGGTGTTGATTCCGAGGCCGGAGACTGAGCTGGTTGTGGATTTGGTGGGTGAGGCGGTGGAGGGGAATGAGGGTTTAAGGGAGGGTTTGTGGGCTGATTTGGGTACTGGGAGTGGGGCCATTGCTATTGGGATTGCCAGGGTTTTGGGTAGTTGTGGAAGAGTTTTTGCTACTGATTTGAGTCCTGTTGCGGTTTCGGTTGCCAGGTTTAATGTGGAGAGGTACGGTTTGCAGGATGTGGTGGAGGTGAGGCAAGGGTCTTGGTTTGAGCCATTAAAAGATGTGGAAGGTAAGCTTGCTGGGTTTGTAAGTAATCCGCCGTACATACCAAGTGACAATATCTCGGGGCTGCAAGCTGAGGTTGGAAGACATGAACCCAGAGTAGCATTGGATGGTGGTGTTGATGGCATGGATGATCTTTTACATCTTTGCAGAGGGGCTGCTTCCATGTTGAGACCTGGTGGATTTTTTGCTCTTGAGACAAATGGTGAGAGCCAATGCAAGTATCTTGTGGATTACATGGAAAATGAGGCTAGAGGCAGCTTTTGTAATTTGAGCATAATTCCTGATTTTGCTGGTATTCATAGATTTGTTACCGGATTCCGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS Methyltransf_31 PrmA

Protein Analysis

364

Amino Acids

39.9

Weight (kDa)

5.77

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTS	PF05175	188 - 268	1.3e-06	Methyltransferase small domain
PrmA	PF06325	192 - 244	2.5e-06	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31	PF13847	193 - 253	6.5e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64150
fragaria_vesca	FvH4_3g16091
malus_domestica	MD05G1214000.v1.1 MD05G1214300.v1.1 MD10G1197800.v1.1
prunus_persica	Prupe.4G144100_v2.0.a1
pyrus_communis	pycom10g17050
rosa_chinensis	RchiOBHm_Chr5g0027061 RchiOBHm_Chr6g0281451
rosa_laevigata	RLG00000009431 RLG00000032986
rosa_multiflora	Rmu_co7998874.1_g000001 Rmu_sc0000847.1_g000007 Rmu_sc0000882.1_g000023 Rmu_sc0001866.1_g000008 Rmu_sc0006065.1_g000029
rosa_roxburghii	Rroxscaffold_1G00052430 Rroxscaffold_2G00135560 Rroxscaffold_6G00430700
rosa_rugosa	Rorug02G0601800 Rorug05G0096900 Rorug05G0097000
rosa_samantha	Rh1CG018500 Rh1DG015600 Rh3AG054200 Rh3BG055600 Rh3CG054900 Rh4BG038500 Rh5AG190600 Rh5BG188200 Rh5CG208000 Rh5DG190000 Rh5DG541600 Rh6BG255900 Rh6DG247400
rosa_wichuraiana	Rw5G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	204
AccBSI	CCGCTC	1 cut(s)	78
AciI	CCGC	9 cut(s)	51, 73, 76, 113, 177, 183, 536, 671, 797
AfaI	GTAC	4 cut(s)	386, 586, 704, 803
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	410, 476
AjnI	CCWGG	4 cut(s)	372, 617, 683, 937
AluBI	AGCT	8 cut(s)	7, 295, 334, 460, 511, 775, 836, 1023
AluI	AGCT	8 cut(s)	7, 295, 334, 460, 511, 775, 836, 1023
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	3 cut(s)	497, 928, 953
Ama87I	CYCGRG	1 cut(s)	823
AoxI	GGCC	5 cut(s)	213, 265, 419, 497, 597
ApeKI	GCWGC	3 cut(s)	829, 920, 1020
AspS9I	GGNCC	4 cut(s)	213, 240, 266, 597
AsuHPI	GGTGA	5 cut(s)	99, 356, 542, 739, 980
AvaI	CYCGRG	1 cut(s)	823
AvaII	GGWCC	1 cut(s)	240
BanI	GGYRCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	297
BbsI	GAAGAC	1 cut(s)	853
Bbv12I	GWGCWC	1 cut(s)	297
BbvCI	CCTCAGC	1 cut(s)	837
BbvI	GCAGC	3 cut(s)	816, 907, 1032
BccI	CCATC	3 cut(s)	176, 866, 878
BceAI	ACGGC	2 cut(s)	280, 784
BciT130I	CCWGG	4 cut(s)	374, 619, 685, 939
BcoDI	GTCTC	3 cut(s)	497, 928, 953
BfaI	CTAG	1 cut(s)	1014
BisI	GCNGC	4 cut(s)	76, 830, 921, 1021
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	4 cut(s)	77, 831, 922, 1022
Bme1390I	CCNGG	4 cut(s)	374, 619, 685, 939
Bme18I	GGWCC	1 cut(s)	240
BmeT110I	CYCGRG	1 cut(s)	823
BmgT120I	GGNCC	4 cut(s)	213, 240, 266, 597
BmiI	GGNNCC	4 cut(s)	206, 241, 268, 598
BmrFI	CCNGG	4 cut(s)	374, 619, 685, 939
BmrI	ACTGGG	2 cut(s)	220, 597
BmuI	ACTGGG	2 cut(s)	220, 597
BpiI	GAAGAC	1 cut(s)	853
BpmI	CTGGAG	2 cut(s)	179, 395
Bpu10I	CCTNAGC	1 cut(s)	837
Bpu1102I	GCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	977
BsaI	GGTCTC	1 cut(s)	928
BsaJI	CCNNGG	2 cut(s)	494, 618
BsaWI	WCCGGW	1 cut(s)	1076
BsaXI	ACNNNNNCTCC	4 cut(s)	368, 398, 554, 584
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	2 cut(s)	215, 592
Bse3DI	GCAATG	2 cut(s)	206, 600
BseBI	CCWGG	4 cut(s)	374, 619, 685, 939
BseDI	CCNNGG	2 cut(s)	494, 618
BseGI	GGATG	4 cut(s)	168, 721, 877, 898
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMI	GCAATG	2 cut(s)	206, 600
BseMII	CTCAG	6 cut(s)	201, 246, 301, 353, 498, 828
BseNI	ACTGG	2 cut(s)	215, 592
BseRI	GAGGAG	3 cut(s)	37, 392, 430
BseXI	GCAGC	3 cut(s)	816, 907, 1032
BseYI	CCCAGC	1 cut(s)	779
BshFI	GGCC	5 cut(s)	215, 267, 421, 499, 599
BshNI	GGYRCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	823
BsiSI	CCGG	2 cut(s)	500, 1077
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	3 cut(s)	497, 928, 953
BsnI	GGCC	5 cut(s)	215, 267, 421, 499, 599
Bso31I	GGTCTC	1 cut(s)	928
BsoBI	CYCGRG	1 cut(s)	823
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	895
Bsp1720I	GCTNAGC	1 cut(s)	8
BspACI	CCGC	9 cut(s)	51, 73, 76, 113, 177, 183, 536, 671, 797
BspANI	GGCC	5 cut(s)	215, 267, 421, 499, 599
BspCNI	CTCAG	6 cut(s)	200, 245, 300, 354, 499, 829
BspLI	GGNNCC	4 cut(s)	206, 241, 268, 598
BspT107I	GGYRCC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	928
BsrBI	CCGCTC	1 cut(s)	78
BsrDI	GCAATG	2 cut(s)	206, 600
BsrI	ACTGG	2 cut(s)	215, 592
BssECI	CCNNGG	2 cut(s)	494, 618
BssMI	GATC	1 cut(s)	895
Bst2UI	CCWGG	4 cut(s)	374, 619, 685, 939
Bst4CI	ACNGT	2 cut(s)	344, 707
Bst6I	CTCTTC	3 cut(s)	94, 405, 634
BstC8I	GCNNGC	2 cut(s)	777, 834
BstDEI	CTNAG	7 cut(s)	8, 187, 232, 287, 362, 507, 837
BstF5I	GGATG	4 cut(s)	168, 721, 877, 898
BstKTI	GATC	1 cut(s)	898
BstMAI	GTCTC	3 cut(s)	497, 928, 953
BstMBI	GATC	1 cut(s)	895
BstMWI	GCNNNNNNNGC	3 cut(s)	292, 301, 397
BstNI	CCWGG	4 cut(s)	374, 619, 685, 939
BstSCI	CCNGG	4 cut(s)	372, 617, 683, 937
BstV1I	GCAGC	3 cut(s)	816, 907, 1032
BstV2I	GAAGAC	1 cut(s)	853
BstXI	CCANNNNNNTGG	1 cut(s)	625
BsuRI	GGCC	5 cut(s)	215, 267, 421, 499, 599
BtsCI	GGATG	4 cut(s)	168, 721, 877, 898
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	2 cut(s)	777, 834
Cfr13I	GGNCC	4 cut(s)	213, 240, 266, 597
CseI	GACGC	1 cut(s)	323
CsiI	ACCWGGT	1 cut(s)	937
Csp6I	GTAC	4 cut(s)	385, 585, 703, 802
CviAII	CATG	4 cut(s)	851, 889, 928, 1000
CviQI	GTAC	4 cut(s)	385, 585, 703, 802
DdeI	CTNAG	7 cut(s)	8, 187, 232, 287, 362, 507, 837
DpnI	GATC	1 cut(s)	897
DpnII	GATC	1 cut(s)	895
Eam1104I	CTCTTC	3 cut(s)	94, 405, 634
EarI	CTCTTC	3 cut(s)	94, 405, 634
EciI	GGCGGA	3 cut(s)	40, 62, 786
Ecl136II	GAGCTC	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	928
Eco47I	GGWCC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	295
Eco88I	CYCGRG	1 cut(s)	823
EcoICRI	GAGCTC	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	240
EcoRII	CCWGG	4 cut(s)	372, 617, 683, 937
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	4 cut(s)	854, 892, 931, 1003
FaiI	YATR	8 cut(s)	432, 806, 852, 890, 929, 1001, 1040, 1065
FalI	AAGNNNNNCTT	2 cut(s)	759, 791
FatI	CATG	4 cut(s)	850, 888, 927, 999
FauI	CCCGC	1 cut(s)	184
Fnu4HI	GCNGC	4 cut(s)	76, 830, 921, 1021
FokI	GGATG	4 cut(s)	155, 728, 884, 905
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	4 cut(s)	76, 830, 921, 1021
FspBI	CTAG	1 cut(s)	1014
GluI	GCNGC	4 cut(s)	76, 830, 921, 1021
GsaI	CCCAGC	1 cut(s)	783
GsuI	CTGGAG	2 cut(s)	179, 395
HaeIII	GGCC	5 cut(s)	215, 267, 421, 499, 599
HapII	CCGG	2 cut(s)	500, 1077
HgaI	GACGC	1 cut(s)	323
Hin1II	CATG	4 cut(s)	854, 892, 931, 1003
HindIII	AAGCTT	1 cut(s)	773
HinfI	GANTC	5 cut(s)	254, 272, 490, 661, 1080
HpaII	CCGG	2 cut(s)	500, 1077
HphI	GGTGA	5 cut(s)	99, 356, 542, 739, 980
Hpy188I	TCNGA	5 cut(s)	161, 190, 259, 290, 495
Hpy188III	TCNNGA	4 cut(s)	326, 476, 956, 1046
HpyAV	CCTTC	6 cut(s)	43, 65, 256, 341, 473, 761
HpyCH4III	ACNGT	2 cut(s)	344, 707
HpyCH4V	TGCA	4 cut(s)	712, 832, 912, 981
HpyF10VI	GCNNNNNNNGC	3 cut(s)	292, 301, 397
HpyF3I	CTNAG	7 cut(s)	8, 187, 232, 287, 362, 507, 837
Hsp92II	CATG	4 cut(s)	854, 892, 931, 1003
Kzo9I	GATC	1 cut(s)	895
LmnI	GCTCC	2 cut(s)	83, 457
Lsp1109I	GCAGC	3 cut(s)	816, 907, 1032
MabI	ACCWGGT	1 cut(s)	937
MaeI	CTAG	1 cut(s)	1014
MaeIII	GTNAC	2 cut(s)	812, 1072
MalI	GATC	1 cut(s)	897
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	1 cut(s)	895
MboII	GAAGA	4 cut(s)	81, 422, 651, 858
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	2 cut(s)	1030, 1041
MlyI	GAGTC	3 cut(s)	248, 266, 670
MmeI	TCCRAC	3 cut(s)	184, 282, 823
MseI	TTAA	4 cut(s)	39, 557, 690, 755
MspI	CCGG	2 cut(s)	500, 1077
MspR9I	CCNGG	4 cut(s)	374, 619, 685, 939
MvaI	CCWGG	4 cut(s)	374, 619, 685, 939
MwoI	GCNNNNNNNGC	3 cut(s)	292, 301, 397
NdeII	GATC	1 cut(s)	895
NlaIII	CATG	4 cut(s)	854, 892, 931, 1003
NlaIV	GGNNCC	4 cut(s)	206, 241, 268, 598
NmuCI	GTSAC	1 cut(s)	812
PceI	AGGCCT	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	490, 1080
PkrI	GCNGC	4 cut(s)	77, 831, 922, 1022
PleI	GAGTC	3 cut(s)	248, 266, 669
PpsI	GAGTC	3 cut(s)	248, 266, 669
PpuMI	RGGWCCY	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	297
Psp5II	RGGWCCY	1 cut(s)	240
Psp6I	CCWGG	4 cut(s)	372, 617, 683, 937
PspFI	CCCAGC	1 cut(s)	779
PspGI	CCWGG	4 cut(s)	372, 617, 683, 937
PspN4I	GGNNCC	4 cut(s)	206, 241, 268, 598
PspPI	GGNCC	4 cut(s)	213, 240, 266, 597
PspPPI	RGGWCCY	1 cut(s)	240
RsaI	GTAC	4 cut(s)	386, 586, 704, 803
RsaNI	GTAC	4 cut(s)	385, 585, 703, 802
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	4 cut(s)	39, 557, 690, 755
SatI	GCNGC	4 cut(s)	76, 830, 921, 1021
Sau3AI	GATC	1 cut(s)	895
Sau96I	GGNCC	4 cut(s)	213, 240, 266, 597
SchI	GAGTC	3 cut(s)	248, 266, 670
ScrFI	CCNGG	4 cut(s)	374, 619, 685, 939
SduI	GDGCHC	1 cut(s)	297
SexAI	ACCWGGT	1 cut(s)	937
SinI	GGWCC	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
Sse9I	AATT	2 cut(s)	1030, 1041
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	9 cut(s)	51, 73, 76, 113, 177, 183, 536, 671, 797
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	1 cut(s)	1014
SstI	GAGCTC	1 cut(s)	297
StuI	AGGCCT	1 cut(s)	421
StyD4I	CCNGG	4 cut(s)	372, 617, 683, 937
TaaI	ACNGT	2 cut(s)	344, 707
TaqI	TCGA	1 cut(s)	336
TasI	AATT	2 cut(s)	1030, 1041
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	2 cut(s)	490, 1080
Tru1I	TTAA	4 cut(s)	39, 557, 690, 755
Tru9I	TTAA	4 cut(s)	39, 557, 690, 755
TscAI	CASTG	1 cut(s)	215
TseFI	GTSAC	1 cut(s)	812
TseI	GCWGC	3 cut(s)	829, 920, 1020
Tsp45I	GTSAC	1 cut(s)	812
TspDTI	ATGAA	4 cut(s)	17, 311, 867, 1052
TspGWI	ACGGA	1 cut(s)	1073
TspRI	CASTG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	240
XcmI	CCANNNNNNNNNTGG	2 cut(s)	691, 865
XspI	CTAG	1 cut(s)	1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.