Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006065.1

Orthogroup ID

OG0003404

Physical Location & Seq

Genomic Coordinates Forward (+)

154259 .. 156213

Gene Structure 1955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006065.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

atgaagctaagcctcactccaaaactctcaaccttccttaaaccctcccttgcttctactcccctccgtcgctctctttgctcttcttcaccatcaccaccaccaccacccatttctctaaaaccccaaacccctctctttctgagaccacccattcactcagccacctcctcagacctccagcagtggcaggactgggccaaaaccctcgcttcctcagttgggtcgaccttcgccgactcagacaacggccccgactcgacccttttgctcagagagctcaactggctcgtagacgacgcagttcaacaaggaatcgaaaatggtcaaagaaaaattagattgagagtgagtctggaggagctgtacttgttgtggaagcagaggattgaagagaggaagccctttcagtacattgttgggtgtgagcattggagggagctggtgctgtgtgttcaagaaggggttttgattccgaggccggagactgagctcattgtggatttggtgggtgatgtggtgaagggtgaggagggtttaagagagggtttgtgggcagatttggggactgggagtggggctattgctattgggattgggagggttttggggactggtggtggcagagtcattgcaactgatttgagtcccactgcgatttcggttgcggggtttaatgtggagaggtatggtttgcaggatgtggtggagctaaggcaaggatcatggtttgacccattaaaggatgtggaaggtaaacttgcggggttcgtaagtaatccaccgtacataccaagtgacaatatctcggggctacaagctgaagttggaagacatgaacccagagttgcactggatggcggtgttgatggcatggatgatctcttacatctttgcaaaggggctgcttccattttgaaacctggtggattttttgcttttgagacaaatggtgagaagcagtgcaagtatcttgtggagtacatggaaaatgaggctagaagcagcttttgtaatttgagtataattcctgattttgcgggtattcatagatttgttaccggattccataaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS Methyltransf_31 PrmA

Protein Analysis

358

Amino Acids

39.17

Weight (kDa)

5.4

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64150
fragaria_vesca	FvH4_3g16091
malus_domestica	MD05G1214000.v1.1 MD05G1214300.v1.1 MD10G1197800.v1.1
prunus_persica	Prupe.4G144100_v2.0.a1
pyrus_communis	pycom10g17050
rosa_chinensis	RchiOBHm_Chr5g0027061 RchiOBHm_Chr6g0281451
rosa_laevigata	RLG00000009431 RLG00000032986
rosa_multiflora	Rmu_co7998874.1_g000001 Rmu_sc0000847.1_g000007 Rmu_sc0000882.1_g000023 Rmu_sc0001866.1_g000008 Rmu_sc0006065.1_g000029
rosa_roxburghii	Rroxscaffold_1G00052430 Rroxscaffold_2G00135560 Rroxscaffold_6G00430700
rosa_rugosa	Rorug02G0601800 Rorug05G0096900 Rorug05G0097000
rosa_samantha	Rh1CG018500 Rh1DG015600 Rh3AG054200 Rh3BG055600 Rh3CG054900 Rh4BG038500 Rh5AG190600 Rh5BG188200 Rh5CG208000 Rh5DG190000 Rh5DG541600 Rh6BG255900 Rh6DG247400
rosa_wichuraiana	Rw5G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	227, 294
AciI	CCGC	4 cut(s)	668, 764, 861, 1040
AclWI	GGATC	1 cut(s)	730
AcuI	CTGAAG	1 cut(s)	843
AfaI	GTAC	4 cut(s)	368, 413, 788, 983
AfiI	CCNNNNNNNGG	2 cut(s)	222, 742
AgsI	TTSAA	4 cut(s)	308, 392, 458, 919
AjnI	CCWGG	1 cut(s)	922
AluBI	AGCT	8 cut(s)	7, 280, 364, 442, 493, 712, 821, 1008
AluI	AGCT	8 cut(s)	7, 280, 364, 442, 493, 712, 821, 1008
Alw21I	GWGCWC	2 cut(s)	282, 495
Alw26I	GTCTC	3 cut(s)	139, 479, 938
AlwI	GGATC	1 cut(s)	730
Ama87I	CYCGRG	1 cut(s)	808
AoxI	GGCC	3 cut(s)	198, 250, 479
ApeKI	GCWGC	2 cut(s)	905, 1005
AspS9I	GGNCC	2 cut(s)	198, 251
AsuHPI	GGTGA	6 cut(s)	81, 87, 524, 532, 539, 965
AvaI	CYCGRG	1 cut(s)	808
BanII	GRGCYC	2 cut(s)	282, 495
BbsI	GAAGAC	1 cut(s)	838
Bbv12I	GWGCWC	2 cut(s)	282, 495
BbvI	GCAGC	2 cut(s)	892, 1017
BccI	CCATC	3 cut(s)	100, 851, 863
BceAI	ACGGC	1 cut(s)	265
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	1 cut(s)	924
BcoDI	GTCTC	3 cut(s)	139, 479, 938
BfaI	CTAG	1 cut(s)	999
BisI	GCNGC	2 cut(s)	906, 1006
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	2 cut(s)	907, 1007
Bme1390I	CCNGG	1 cut(s)	924
BmeT110I	CYCGRG	1 cut(s)	808
BmgT120I	GGNCC	2 cut(s)	198, 251
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	924
BmrI	ACTGGG	2 cut(s)	205, 579
BmuI	ACTGGG	2 cut(s)	205, 579
BpiI	GAAGAC	1 cut(s)	838
BpmI	CTGGAG	2 cut(s)	164, 377
Bpu10I	CCTNAGC	1 cut(s)	713
Bpu1102I	GCTNAGC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	476
BsaWI	WCCGGW	1 cut(s)	1061
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 742
Bse1I	ACTGG	5 cut(s)	200, 290, 574, 619, 858
Bse3DI	GCAATG	1 cut(s)	630
BseBI	CCWGG	1 cut(s)	924
BseDI	CCNNGG	1 cut(s)	476
BseGI	GGATG	4 cut(s)	706, 751, 862, 883
BseLI	CCNNNNNNNGG	2 cut(s)	222, 742
BseMI	GCAATG	1 cut(s)	630
BseMII	CTCAG	7 cut(s)	134, 174, 186, 231, 255, 286, 480
BseNI	ACTGG	5 cut(s)	200, 290, 574, 619, 858
BseRI	GAGGAG	3 cut(s)	160, 374, 545
BseXI	GCAGC	2 cut(s)	892, 1017
BshFI	GGCC	3 cut(s)	200, 252, 481
BsiHKAI	GWGCWC	2 cut(s)	282, 495
BsiHKCI	CYCGRG	1 cut(s)	808
BsiSI	CCGG	2 cut(s)	482, 1062
BslFI	GGGAC	3 cut(s)	580, 625, 633
BslI	CCNNNNNNNGG	2 cut(s)	222, 742
BsmAI	GTCTC	3 cut(s)	139, 479, 938
BsmFI	GGGAC	3 cut(s)	580, 625, 633
BsnI	GGCC	3 cut(s)	200, 252, 481
Bso31I	GGTCTC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	808
Bsp1286I	GDGCHC	2 cut(s)	282, 495
Bsp143I	GATC	2 cut(s)	722, 880
Bsp1720I	GCTNAGC	1 cut(s)	8
BspACI	CCGC	4 cut(s)	668, 764, 861, 1040
BspANI	GGCC	3 cut(s)	200, 252, 481
BspCNI	CTCAG	7 cut(s)	135, 173, 185, 230, 254, 285, 481
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	730
BspQI	GCTCTTC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	630
BsrI	ACTGG	5 cut(s)	200, 290, 574, 619, 858
BssECI	CCNNGG	1 cut(s)	476
BssMI	GATC	2 cut(s)	722, 880
Bst2UI	CCWGG	1 cut(s)	924
Bst4CI	ACNGT	1 cut(s)	786
Bst6I	CTCTTC	2 cut(s)	88, 387
BstDEI	CTNAG	9 cut(s)	8, 143, 160, 172, 217, 241, 272, 489, 713
BstF5I	GGATG	4 cut(s)	706, 751, 862, 883
BstKTI	GATC	2 cut(s)	725, 883
BstMAI	GTCTC	3 cut(s)	139, 479, 938
BstMBI	GATC	2 cut(s)	722, 880
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 277, 286
BstNI	CCWGG	1 cut(s)	924
BstSCI	CCNGG	1 cut(s)	922
BstV1I	GCAGC	2 cut(s)	892, 1017
BstV2I	GAAGAC	1 cut(s)	838
BsuRI	GGCC	3 cut(s)	200, 252, 481
BtsCI	GGATG	4 cut(s)	706, 751, 862, 883
BtsI	GCAGTG	3 cut(s)	191, 651, 968
BtsIMutI	CAGTG	4 cut(s)	191, 651, 851, 968
Cfr13I	GGNCC	2 cut(s)	198, 251
CseI	GACGC	1 cut(s)	308
CsiI	ACCWGGT	1 cut(s)	922
Csp6I	GTAC	4 cut(s)	367, 412, 787, 982
CviAII	CATG	4 cut(s)	726, 836, 874, 985
CviQI	GTAC	4 cut(s)	367, 412, 787, 982
DdeI	CTNAG	9 cut(s)	8, 143, 160, 172, 217, 241, 272, 489, 713
DpnI	GATC	2 cut(s)	724, 882
DpnII	GATC	2 cut(s)	722, 880
Eam1104I	CTCTTC	2 cut(s)	88, 387
EarI	CTCTTC	2 cut(s)	88, 387
Ecl136II	GAGCTC	2 cut(s)	280, 493
Eco24I	GRGCYC	2 cut(s)	282, 495
Eco31I	GGTCTC	1 cut(s)	139
Eco53kI	GAGCTC	2 cut(s)	280, 493
Eco57I	CTGAAG	1 cut(s)	843
Eco88I	CYCGRG	1 cut(s)	808
EcoICRI	GAGCTC	2 cut(s)	280, 493
EcoRII	CCWGG	1 cut(s)	922
EcoT38I	GRGCYC	2 cut(s)	282, 495
FaeI	CATG	4 cut(s)	729, 839, 877, 988
FaiI	YATR	9 cut(s)	690, 727, 791, 837, 875, 986, 1025, 1050, 1071
FalI	AAGNNNNNCTT	2 cut(s)	744, 776
FaqI	GGGAC	3 cut(s)	580, 625, 633
FatI	CATG	4 cut(s)	725, 835, 873, 984
FauI	CCCGC	3 cut(s)	661, 757, 1033
FblI	GTMKAC	2 cut(s)	227, 294
Fnu4HI	GCNGC	2 cut(s)	906, 1006
FokI	GGATG	4 cut(s)	713, 758, 869, 890
FriOI	GRGCYC	2 cut(s)	282, 495
Fsp4HI	GCNGC	2 cut(s)	906, 1006
FspBI	CTAG	1 cut(s)	999
GluI	GCNGC	2 cut(s)	906, 1006
GsuI	CTGGAG	2 cut(s)	164, 377
HaeIII	GGCC	3 cut(s)	200, 252, 481
HapII	CCGG	2 cut(s)	482, 1062
HgaI	GACGC	1 cut(s)	308
Hin1II	CATG	4 cut(s)	729, 839, 877, 988
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	8 cut(s)	239, 257, 315, 352, 472, 627, 646, 1065
HpaII	CCGG	2 cut(s)	482, 1062
HphI	GGTGA	6 cut(s)	81, 87, 524, 532, 539, 965
Hpy166II	GTNNAC	3 cut(s)	228, 295, 758
Hpy188I	TCNGA	5 cut(s)	144, 175, 244, 275, 477
Hpy188III	TCNNGA	3 cut(s)	356, 458, 1031
Hpy8I	GTNNAC	3 cut(s)	228, 295, 758
Hpy99I	CGWCG	2 cut(s)	72, 302
HpyAV	CCTTC	5 cut(s)	43, 241, 455, 517, 746
HpyCH4III	ACNGT	1 cut(s)	786
HpyCH4V	TGCA	5 cut(s)	635, 697, 851, 897, 966
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 277, 286
HpyF3I	CTNAG	9 cut(s)	8, 143, 160, 172, 217, 241, 272, 489, 713
Hsp92II	CATG	4 cut(s)	729, 839, 877, 988
Kzo9I	GATC	2 cut(s)	722, 880
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	3 cut(s)	361, 439, 709
Lsp1109I	GCAGC	2 cut(s)	892, 1017
MabI	ACCWGGT	1 cut(s)	922
MaeI	CTAG	1 cut(s)	999
MaeIII	GTNAC	2 cut(s)	797, 1057
MalI	GATC	2 cut(s)	724, 882
MboI	GATC	2 cut(s)	722, 880
MboII	GAAGA	4 cut(s)	75, 78, 404, 843
MhlI	GDGCHC	2 cut(s)	282, 495
MluCI	AATT	3 cut(s)	336, 1015, 1026
MlyI	GAGTC	5 cut(s)	233, 251, 361, 636, 655
MmeI	TCCRAC	1 cut(s)	808
MseI	TTAA	4 cut(s)	39, 539, 675, 740
MspI	CCGG	2 cut(s)	482, 1062
MspR9I	CCNGG	1 cut(s)	924
MvaI	CCWGG	1 cut(s)	924
MwoI	GCNNNNNNNGC	3 cut(s)	78, 277, 286
NdeII	GATC	2 cut(s)	722, 880
NlaIII	CATG	4 cut(s)	729, 839, 877, 988
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	797
PciSI	GCTCTTC	1 cut(s)	88
PfeI	GAWTC	3 cut(s)	315, 472, 1065
PkrI	GCNGC	2 cut(s)	907, 1007
PleI	GAGTC	5 cut(s)	233, 251, 360, 635, 654
PpsI	GAGTC	5 cut(s)	233, 251, 360, 635, 654
Psp124BI	GAGCTC	2 cut(s)	282, 495
Psp6I	CCWGG	1 cut(s)	922
PspGI	CCWGG	1 cut(s)	922
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	198, 251
RsaI	GTAC	4 cut(s)	368, 413, 788, 983
RsaNI	GTAC	4 cut(s)	367, 412, 787, 982
SacI	GAGCTC	2 cut(s)	282, 495
SalI	GTCGAC	1 cut(s)	226
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	4 cut(s)	39, 539, 675, 740
SatI	GCNGC	2 cut(s)	906, 1006
Sau3AI	GATC	2 cut(s)	722, 880
Sau96I	GGNCC	2 cut(s)	198, 251
SchI	GAGTC	5 cut(s)	233, 251, 361, 636, 655
ScrFI	CCNGG	1 cut(s)	924
SduI	GDGCHC	2 cut(s)	282, 495
SexAI	ACCWGGT	1 cut(s)	922
Sse9I	AATT	3 cut(s)	336, 1015, 1026
SsiI	CCGC	4 cut(s)	668, 764, 861, 1040
SspMI	CTAG	1 cut(s)	999
SstI	GAGCTC	2 cut(s)	282, 495
StyD4I	CCNGG	1 cut(s)	922
TaaI	ACNGT	1 cut(s)	786
TaqI	TCGA	3 cut(s)	227, 260, 318
TasI	AATT	3 cut(s)	336, 1015, 1026
TatI	WGTACW	3 cut(s)	366, 411, 981
TfiI	GAWTC	3 cut(s)	315, 472, 1065
Tru1I	TTAA	4 cut(s)	39, 539, 675, 740
Tru9I	TTAA	4 cut(s)	39, 539, 675, 740
TscAI	CASTG	4 cut(s)	191, 658, 858, 968
TseFI	GTSAC	1 cut(s)	797
TseI	GCWGC	2 cut(s)	905, 1005
Tsp45I	GTSAC	1 cut(s)	797
TspDTI	ATGAA	3 cut(s)	17, 852, 1037
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	4 cut(s)	191, 658, 858, 968
XcmI	CCANNNNNNNNNTGG	1 cut(s)	850
XmiI	GTMKAC	2 cut(s)	227, 294
XspI	CTAG	1 cut(s)	999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.