Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003404

Physical Location & Seq

Genomic Coordinates Reverse (-)

8582308 .. 8583432

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0097000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAGGATAATGGAGAAAAAGTTGCTCGCCGGAAAGGTCCGTCCATCGTGGGAAGGAAACGGAAGTTCCGATCACTAAGTAAGGTAATGGTGGATACTGCAGGAAGAAGAAAATGGGCCAAGTTAGAGGTGGACTGCTTAACCAATGTGTTTGGAAGACTAGGAATGGAGTCACTGCTTTTGAATGTGCCTTTTGTCTGCAAATCATGGCACAAAGCAACCCAGGATCCTCTGTGCTGGCAAAACCTCTCATTCCCAGAGTTTTTACCACTACTCGAACCCAAGAGTCTCGGCCCGGAGCCATTTTACTACAAGTTTGTTGATAAATGTCAAGTCAAGAAGAACACTACTTTCTCCATCAGTGCTTTTGTAAGGATGGTAGTGGCTCGTAGCCACGGAAAGGCCATCGAGATCAAACTCCCTGGCTTTATAACTGAAGAGACCTTGAGGTACGTTTCGGATGCATGTCCCGGGATTAGGGTTTTGTGCATGCCAGATGATATAGTCATTTTTAAGCATTCTAGGCTTATTGCGAAATTGATTGGCAAGTGGAAGATGTTGGAGCAATTGCATTTGGGCGGCAATCTCAAGAAGATTGTCACACTTCGAGCACAATTGGATAAGCAAAGGACAAATGATTTGTTTGCCATGGGAGATTATTGTTCGTGTGAAACCATATTGGACGAGATCGTGATGCAGATTGGCATTCACTGCAATCATTTTGTAGGTCTCAGAATTGCTCATGCTTATATTGATGAAGTAGAGGCATCGATTATTGCGGAATCGTTGCCGAATCTTAAATACTTGTGGGTTGAAGAGTCTCACTTTGAAGGGGACAGTCTTGTCACGCTAGTGCGGGGCTGCAAACAACTTGAGGTTTTGGATGTCACTGACTGTGGAGAACTTGAACACAGTGATGGTGATATGAAGGAAATAGCAACCCTTGCTAAGGGCTATGGTATTGAATTTCTATGGCAAGGTGGACGTGAAGATGCTGATTATTGTGGTCTTGATTTTCAGAACCGGTCGAGGAAGTTGCTTTTAACCAAGGTTCGTGTGAGACAATGTCCACGGATGAGCACCGGTGGAATGGCACCATCGAGGCTCCTAGCTCATAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS Methyltransf_31 PrmA

Protein Analysis

374

Amino Acids

42.48

Weight (kDa)

8.86

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64150
fragaria_vesca	FvH4_3g16091
malus_domestica	MD05G1214000.v1.1 MD05G1214300.v1.1 MD10G1197800.v1.1
prunus_persica	Prupe.4G144100_v2.0.a1
pyrus_communis	pycom10g17050
rosa_chinensis	RchiOBHm_Chr5g0027061 RchiOBHm_Chr6g0281451
rosa_laevigata	RLG00000009431 RLG00000032986
rosa_multiflora	Rmu_co7998874.1_g000001 Rmu_sc0000847.1_g000007 Rmu_sc0000882.1_g000023 Rmu_sc0001866.1_g000008 Rmu_sc0006065.1_g000029
rosa_roxburghii	Rroxscaffold_1G00052430 Rroxscaffold_2G00135560 Rroxscaffold_6G00430700
rosa_rugosa	Rorug02G0601800 Rorug05G0096900 Rorug05G0097000
rosa_samantha	Rh1CG018500 Rh1DG015600 Rh3AG054200 Rh3BG055600 Rh3CG054900 Rh4BG038500 Rh5AG190600 Rh5BG188200 Rh5CG208000 Rh5DG190000 Rh5DG541600 Rh6BG255900 Rh6DG247400
rosa_wichuraiana	Rw5G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
AasI	GACNNNNNNGTC	1 cut(s)	842
AccB1I	GGYRCC	1 cut(s)	1093
AciI	CCGC	3 cut(s)	579, 779, 856
AclWI	GGATC	2 cut(s)	221, 234
AcsI	RAATTY	1 cut(s)	965
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	3 cut(s)	400, 477, 949
AgeI	ACCGGT	2 cut(s)	1023, 1082
AgsI	TTSAA	5 cut(s)	184, 815, 830, 908, 965
AjiI	CACGTC	1 cut(s)	986
AjnI	CCWGG	2 cut(s)	222, 421
AleI	CACNNNNGTG	1 cut(s)	851
AluBI	AGCT	1 cut(s)	1112
AluI	AGCT	1 cut(s)	1112
Alw21I	GWGCWC	2 cut(s)	613, 1082
Alw26I	GTCTC	5 cut(s)	293, 434, 734, 825, 1054
AlwI	GGATC	2 cut(s)	221, 234
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	3 cut(s)	117, 292, 402
ApeKI	GCWGC	1 cut(s)	861
ApoI	RAATTY	1 cut(s)	965
ArsI	GACNNNNNNTTYG	2 cut(s)	622, 654
AsiGI	ACCGGT	2 cut(s)	1023, 1082
AspS9I	GGNCC	3 cut(s)	38, 117, 293
AsuC2I	CCSGG	3 cut(s)	296, 471, 472
AsuHPI	GGTGA	1 cut(s)	932
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	1093
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	2 cut(s)	613, 1082
BbvI	GCAGC	1 cut(s)	848
BccI	CCATC	6 cut(s)	53, 365, 370, 413, 911, 1105
BcgI	CGANNNNNNTGC	2 cut(s)	1018, 1052
BciT130I	CCWGG	2 cut(s)	224, 423
BciVI	GTATCC	1 cut(s)	88
BcnI	CCSGG	3 cut(s)	296, 471, 472
BcoDI	GTCTC	5 cut(s)	293, 434, 734, 825, 1054
BfaI	CTAG	4 cut(s)	161, 522, 851, 1109
BfmI	CTRYAG	1 cut(s)	99
BfuI	GTATCC	1 cut(s)	88
BisI	GCNGC	2 cut(s)	580, 862
BlsI	GCNGC	2 cut(s)	581, 863
Bme1390I	CCNGG	5 cut(s)	224, 296, 423, 471, 472
Bme18I	GGWCC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	470
BmgBI	CACGTC	1 cut(s)	986
BmgT120I	GGNCC	3 cut(s)	38, 117, 293
BmiI	GGNNCC	4 cut(s)	228, 300, 1095, 1106
BmrFI	CCNGG	5 cut(s)	224, 296, 423, 471, 472
BmsI	GCATC	4 cut(s)	451, 684, 776, 982
BpiI	GAAGAC	1 cut(s)	163
Bpu10I	CCTNAGC	1 cut(s)	948
BpuEI	CTTGAG	3 cut(s)	466, 572, 893
BpuMI	CCSGG	3 cut(s)	296, 471, 472
Bsa29I	ATCGAT	1 cut(s)	770
BsaI	GGTCTC	2 cut(s)	434, 734
BsaJI	CCNNGG	7 cut(s)	222, 394, 421, 470, 648, 1047, 1070
BsaWI	WCCGGW	2 cut(s)	1023, 1082
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	3 cut(s)	400, 477, 949
Bse118I	RCCGGY	2 cut(s)	1023, 1082
BseBI	CCWGG	2 cut(s)	224, 423
BseCI	ATCGAT	1 cut(s)	770
BseDI	CCNNGG	7 cut(s)	222, 394, 421, 470, 648, 1047, 1070
BseGI	GGATG	4 cut(s)	381, 466, 889, 1080
BseLI	CCNNNNNNNGG	3 cut(s)	400, 477, 949
BseMII	CTCAG	1 cut(s)	745
BseXI	GCAGC	1 cut(s)	848
Bsh1285I	CGRYCG	1 cut(s)	1028
BshFI	GGCC	3 cut(s)	119, 294, 404
BshNI	GGYRCC	1 cut(s)	1093
BshTI	ACCGGT	2 cut(s)	1023, 1082
BshVI	ATCGAT	1 cut(s)	770
BsiEI	CGRYCG	1 cut(s)	1028
BsiHKAI	GWGCWC	2 cut(s)	613, 1082
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	5 cut(s)	31, 296, 471, 1024, 1083
BslFI	GGGAC	2 cut(s)	453, 848
BslI	CCNNNNNNNGG	3 cut(s)	400, 477, 949
BsmAI	GTCTC	5 cut(s)	293, 434, 734, 825, 1054
BsmFI	GGGAC	2 cut(s)	453, 848
BsmI	GAATGC	2 cut(s)	517, 705
BsnI	GGCC	3 cut(s)	119, 294, 404
Bso31I	GGTCTC	2 cut(s)	434, 734
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	2 cut(s)	613, 1082
Bsp143I	GATC	4 cut(s)	71, 226, 411, 687
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	3 cut(s)	579, 779, 856
BspANI	GGCC	3 cut(s)	119, 294, 404
BspCNI	CTCAG	1 cut(s)	744
BspDI	ATCGAT	1 cut(s)	770
BspLI	GGNNCC	4 cut(s)	228, 300, 1095, 1106
BspMAI	CTGCAG	1 cut(s)	103
BspPI	GGATC	2 cut(s)	221, 234
BspT107I	GGYRCC	1 cut(s)	1093
BspTNI	GGTCTC	2 cut(s)	434, 734
BsrFI	RCCGGY	2 cut(s)	1023, 1082
BssAI	RCCGGY	2 cut(s)	1023, 1082
BssECI	CCNNGG	7 cut(s)	222, 394, 421, 470, 648, 1047, 1070
BssMI	GATC	4 cut(s)	71, 226, 411, 687
BssT1I	CCWWGG	2 cut(s)	648, 1047
Bst2UI	CCWGG	2 cut(s)	224, 423
Bst4CI	ACNGT	3 cut(s)	839, 896, 914
Bst6I	CTCTTC	2 cut(s)	432, 810
BstAPI	GCANNNNNTGC	2 cut(s)	711, 944
BstC8I	GCNNGC	3 cut(s)	28, 239, 491
BstDEI	CTNAG	3 cut(s)	77, 731, 948
BstDSI	CCRYGG	3 cut(s)	394, 648, 1070
BstENI	CCTNNNNNAGG	1 cut(s)	947
BstF5I	GGATG	4 cut(s)	381, 466, 889, 1080
BstKTI	GATC	4 cut(s)	74, 229, 414, 690
BstMAI	GTCTC	5 cut(s)	293, 434, 734, 825, 1054
BstMBI	GATC	4 cut(s)	71, 226, 411, 687
BstMCI	CGRYCG	1 cut(s)	1028
BstMWI	GCNNNNNNNGC	3 cut(s)	523, 711, 944
BstNI	CCWGG	2 cut(s)	224, 423
BstNSI	RCATGY	2 cut(s)	468, 493
BstSCI	CCNGG	5 cut(s)	222, 294, 421, 469, 470
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	848
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
Bsu15I	ATCGAT	1 cut(s)	770
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	3 cut(s)	119, 294, 404
BsuTUI	ATCGAT	1 cut(s)	770
BtgI	CCRYGG	3 cut(s)	394, 648, 1070
BtrI	CACGTC	1 cut(s)	986
BtsCI	GGATG	4 cut(s)	381, 466, 889, 1080
BtsI	GCAGTG	2 cut(s)	173, 709
BtsIMutI	CAGTG	5 cut(s)	173, 367, 709, 888, 919
Cac8I	GCNNGC	3 cut(s)	28, 239, 491
Cfr10I	RCCGGY	2 cut(s)	1023, 1082
Cfr13I	GGNCC	3 cut(s)	38, 117, 293
Cfr9I	CCCGGG	1 cut(s)	470
ClaI	ATCGAT	1 cut(s)	770
Csp6I	GTAC	1 cut(s)	451
CspAI	ACCGGT	2 cut(s)	1023, 1082
CviAII	CATG	5 cut(s)	207, 465, 490, 649, 743
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	3 cut(s)	77, 731, 948
DpnI	GATC	4 cut(s)	73, 228, 413, 689
DpnII	GATC	4 cut(s)	71, 226, 411, 687
DrdI	GACNNNNNNGTC	1 cut(s)	842
DseDI	GACNNNNNNGTC	1 cut(s)	842
Eam1104I	CTCTTC	2 cut(s)	432, 810
EarI	CTCTTC	2 cut(s)	432, 810
Eco130I	CCWWGG	2 cut(s)	648, 1047
Eco31I	GGTCTC	2 cut(s)	434, 734
Eco47I	GGWCC	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	470
EcoNI	CCTNNNNNAGG	1 cut(s)	947
EcoRII	CCWGG	2 cut(s)	222, 421
EcoT14I	CCWWGG	2 cut(s)	648, 1047
EcoT22I	ATGCAT	1 cut(s)	466
ErhI	CCWWGG	2 cut(s)	648, 1047
FaeI	CATG	5 cut(s)	210, 468, 493, 652, 746
FaqI	GGGAC	2 cut(s)	453, 848
FatI	CATG	5 cut(s)	206, 464, 489, 648, 742
FauI	CCCGC	1 cut(s)	849
Fnu4HI	GCNGC	2 cut(s)	580, 862
FokI	GGATG	4 cut(s)	388, 473, 896, 1087
Fsp4HI	GCNGC	2 cut(s)	580, 862
FspBI	CTAG	4 cut(s)	161, 522, 851, 1109
GluI	GCNGC	2 cut(s)	580, 862
HaeIII	GGCC	3 cut(s)	119, 294, 404
HapII	CCGG	5 cut(s)	31, 296, 471, 1024, 1083
Hin1II	CATG	5 cut(s)	210, 468, 493, 652, 746
HinfI	GANTC	5 cut(s)	170, 286, 782, 793, 818
HpaII	CCGG	5 cut(s)	31, 296, 471, 1024, 1083
HphI	GGTGA	1 cut(s)	932
Hpy166II	GTNNAC	3 cut(s)	133, 983, 1070
Hpy188I	TCNGA	4 cut(s)	71, 460, 734, 1020
Hpy188III	TCNNGA	5 cut(s)	337, 409, 589, 691, 1010
Hpy8I	GTNNAC	3 cut(s)	133, 983, 1070
HpyAV	CCTTC	3 cut(s)	48, 824, 922
HpyCH4III	ACNGT	3 cut(s)	839, 896, 914
HpyCH4IV	ACGT	2 cut(s)	453, 985
HpyCH4V	TGCA	8 cut(s)	101, 201, 464, 489, 571, 697, 714, 864
HpyF10VI	GCNNNNNNNGC	3 cut(s)	523, 711, 944
HpyF3I	CTNAG	3 cut(s)	77, 731, 948
HpySE526I	ACGT	2 cut(s)	453, 985
Hsp92II	CATG	5 cut(s)	210, 468, 493, 652, 746
Kzo9I	GATC	4 cut(s)	71, 226, 411, 687
LmnI	GCTCC	3 cut(s)	298, 562, 1110
Lsp1109I	GCAGC	1 cut(s)	848
LweI	GCATC	4 cut(s)	451, 684, 776, 982
MaeI	CTAG	4 cut(s)	161, 522, 851, 1109
MaeII	ACGT	2 cut(s)	453, 985
MaeIII	GTNAC	4 cut(s)	171, 598, 844, 886
MalI	GATC	4 cut(s)	73, 228, 413, 689
MboI	GATC	4 cut(s)	71, 226, 411, 687
MboII	GAAGA	9 cut(s)	117, 120, 168, 352, 449, 565, 604, 827, 1001
MfeI	CAATTG	2 cut(s)	566, 614
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	2 cut(s)	613, 1082
MluCI	AATT	5 cut(s)	536, 566, 614, 735, 965
MlyI	GAGTC	3 cut(s)	179, 295, 827
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	8 cut(s)	121, 240, 257, 441, 757, 868, 1023, 1095
Mph1103I	ATGCAT	1 cut(s)	466
MseI	TTAA	4 cut(s)	140, 513, 798, 1043
MslI	CAYNNNNRTG	2 cut(s)	851, 915
MspI	CCGG	5 cut(s)	31, 296, 471, 1024, 1083
MspR9I	CCNGG	5 cut(s)	224, 296, 423, 471, 472
MunI	CAATTG	2 cut(s)	566, 614
Mva1269I	GAATGC	2 cut(s)	517, 705
MvaI	CCWGG	2 cut(s)	224, 423
MwoI	GCNNNNNNNGC	3 cut(s)	523, 711, 944
NciI	CCSGG	3 cut(s)	296, 471, 472
NcoI	CCATGG	1 cut(s)	648
NdeII	GATC	4 cut(s)	71, 226, 411, 687
NlaIII	CATG	5 cut(s)	210, 468, 493, 652, 746
NlaIV	GGNNCC	4 cut(s)	228, 300, 1095, 1106
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	4 cut(s)	171, 598, 844, 886
NsiI	ATGCAT	1 cut(s)	466
NspI	RCATGY	2 cut(s)	468, 493
OliI	CACNNNNGTG	1 cut(s)	851
PaeI	GCATGC	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PctI	GAATGC	2 cut(s)	517, 705
PfeI	GAWTC	2 cut(s)	782, 793
PflFI	GACNNNGTC	1 cut(s)	1065
PinAI	ACCGGT	2 cut(s)	1023, 1082
PkrI	GCNGC	2 cut(s)	581, 863
PleI	GAGTC	3 cut(s)	178, 294, 826
PpsI	GAGTC	3 cut(s)	178, 294, 826
PsiI	TTATAA	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	222, 421
PspGI	CCWGG	2 cut(s)	222, 421
PspN4I	GGNNCC	4 cut(s)	228, 300, 1095, 1106
PspPI	GGNCC	3 cut(s)	38, 117, 293
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	226
PsyI	GACNNNGTC	1 cut(s)	1065
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
RseI	CAYNNNNRTG	2 cut(s)	851, 915
SaqAI	TTAA	4 cut(s)	140, 513, 798, 1043
SatI	GCNGC	2 cut(s)	580, 862
Sau3AI	GATC	4 cut(s)	71, 226, 411, 687
Sau96I	GGNCC	3 cut(s)	38, 117, 293
SchI	GAGTC	3 cut(s)	179, 295, 827
ScrFI	CCNGG	5 cut(s)	224, 296, 423, 471, 472
SduI	GDGCHC	2 cut(s)	613, 1082
SfaNI	GCATC	4 cut(s)	451, 684, 776, 982
SfcI	CTRYAG	1 cut(s)	99
SgrAI	CRCCGGYG	1 cut(s)	1082
SinI	GGWCC	1 cut(s)	38
SmaI	CCCGGG	1 cut(s)	472
SmiMI	CAYNNNNRTG	2 cut(s)	851, 915
SmlI	CTYRAG	3 cut(s)	445, 587, 872
SmoI	CTYRAG	3 cut(s)	445, 587, 872
SphI	GCATGC	1 cut(s)	493
Sse9I	AATT	5 cut(s)	536, 566, 614, 735, 965
SsiI	CCGC	3 cut(s)	579, 779, 856
SspMI	CTAG	4 cut(s)	161, 522, 851, 1109
StyD4I	CCNGG	5 cut(s)	222, 294, 421, 469, 470
StyI	CCWWGG	2 cut(s)	648, 1047
TaaI	ACNGT	3 cut(s)	839, 896, 914
TaiI	ACGT	2 cut(s)	456, 988
TaqI	TCGA	6 cut(s)	276, 408, 607, 770, 1028, 1100
TasI	AATT	5 cut(s)	536, 566, 614, 735, 965
TauI	GCSGC	1 cut(s)	582
TfiI	GAWTC	2 cut(s)	782, 793
Tru1I	TTAA	4 cut(s)	140, 513, 798, 1043
Tru9I	TTAA	4 cut(s)	140, 513, 798, 1043
TscAI	CASTG	5 cut(s)	180, 367, 716, 895, 919
TseFI	GTSAC	4 cut(s)	171, 598, 844, 886
TseI	GCWGC	1 cut(s)	861
Tsp45I	GTSAC	4 cut(s)	171, 598, 844, 886
TspDTI	ATGAA	2 cut(s)	771, 941
TspGWI	ACGGA	4 cut(s)	30, 76, 411, 1087
TspMI	CCCGGG	1 cut(s)	470
TspRI	CASTG	5 cut(s)	180, 367, 716, 895, 919
Tth111I	GACNNNGTC	1 cut(s)	1065
VpaK11BI	GGWCC	1 cut(s)	38
XagI	CCTNNNNNAGG	1 cut(s)	947
XapI	RAATTY	1 cut(s)	965
XceI	RCATGY	2 cut(s)	468, 493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XmaI	CCCGGG	1 cut(s)	470
XspI	CTAG	4 cut(s)	161, 522, 851, 1109
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.