Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003404

Physical Location & Seq

Genomic Coordinates Reverse (-)

8274255 .. 8276901

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G144100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAAGCTAAGCTTCAGTCCAAAACTCTCAACATTCCTTAAACCCTCTTCTGTCACTAACCTCCATCGCTCCTTTTGCTCTTCTTCAATATCATCACCACCACCCACTTCACTCAAACCTCAAACCCCTCTCTTTCTGAAGCCACCCATACACTCAGCCGCCTCCTCAGACCTCCAGAAATGGCATGACTGGGCCAAAAGTCTCGCTTCCTCTGTTGGGTCAACGTTTGTGGACTTGGACAATGGCCCAGACTCAACCCTTTTGTGCAGAGAGATCAAATGGCTCATGGAGGACGCAATCGAAGAAGAATCAGAAGGTATGGAAAACAACCAGAGAAGCATTAGGCTAAGGGTGGCCCTGGAGGAGCTTTACATGTTATGGAAGCAGAGGGTTGAAGAGAGGAGGCCATTCCAGTATGTTGTTGGGTGTGAGCATTGGAGGGACTTGGTGCTTTGTGTTCAAGAAGGGGTTCTAATTCCAAGGCCTGAGACTGAGCTCATTGTTGATTTGGTGGGTGATGTGGTTTTGGGTAATGAAGGGTTAAGAGAGGGTCTGTGGGCTGATTTGGGGACTGGGAGTGGTGCAATTGCTATTGGGATTGGGAGGATTTTGGGGACTGGTGGGAGAGTCATTGCAACTGATTTGAGTCCTGCAGCATTTGAGGTGGCAGGTTTTAATGTGCAGAGGTATGGTTTACAGGATGTAGTGGAGCTAAGGCAAGGATCTTGGCTTGAACCATTAAAGGATATGGAAGGTAAACTCGCAGGTCTTGTAAGTAATCCACCATACATACCAAGTGACGATATCTCAGGGCTTCAAGCTGAAGTTGGACGACATGAACCCAAAGTTGCATTGGATGGTGGTATCAATGGCATGGATGATCTTTTACATATTTGCAAAGGGGCTGCTTCTATGTTGAAACCTGGTGGATTTTTTGCTTTTGAGACAAATGGGGAGAAGCAGTGCAAACATCTTGTAGAGTACATGGAAAATGATGCTGGAGGCAGCTTTTGTAATTTGAAAATAGTTCCTGATTTTGCTGGTATTAATAGATTTGTTACAGGATTCCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS Methyltransf_31 PrmA

Protein Analysis

359

Amino Acids

39.25

Weight (kDa)

5.22

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64150
fragaria_vesca	FvH4_3g16091
malus_domestica	MD05G1214000.v1.1 MD05G1214300.v1.1 MD10G1197800.v1.1
prunus_persica	Prupe.4G144100_v2.0.a1
pyrus_communis	pycom10g17050
rosa_chinensis	RchiOBHm_Chr5g0027061 RchiOBHm_Chr6g0281451
rosa_laevigata	RLG00000009431 RLG00000032986
rosa_multiflora	Rmu_co7998874.1_g000001 Rmu_sc0000847.1_g000007 Rmu_sc0000882.1_g000023 Rmu_sc0001866.1_g000008 Rmu_sc0006065.1_g000029
rosa_roxburghii	Rroxscaffold_1G00052430 Rroxscaffold_2G00135560 Rroxscaffold_6G00430700
rosa_rugosa	Rorug02G0601800 Rorug05G0096900 Rorug05G0097000
rosa_samantha	Rh1CG018500 Rh1DG015600 Rh3AG054200 Rh3BG055600 Rh3CG054900 Rh4BG038500 Rh5AG190600 Rh5BG188200 Rh5CG208000 Rh5DG190000 Rh5DG541600 Rh6BG255900 Rh6DG247400
rosa_wichuraiana	Rw5G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	659, 755
AciI	CCGC	1 cut(s)	159
AclI	AACGTT	1 cut(s)	224
AclWI	GGATC	1 cut(s)	730
AcuI	CTGAAG	2 cut(s)	158, 843
AfaI	GTAC	1 cut(s)	983
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	7 cut(s)	87, 395, 461, 734, 818, 919, 1021
AjnI	CCWGG	2 cut(s)	357, 922
AluBI	AGCT	7 cut(s)	7, 12, 367, 496, 712, 821, 1008
AluI	AGCT	7 cut(s)	7, 12, 367, 496, 712, 821, 1008
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	3 cut(s)	206, 482, 938
AlwI	GGATC	1 cut(s)	730
AoxI	GGCC	5 cut(s)	192, 244, 354, 404, 482
ApeKI	GCWGC	3 cut(s)	653, 905, 1005
AseI	ATTAAT	1 cut(s)	1047
Asp700I	GAANNNNTTC	1 cut(s)	468
AspS9I	GGNCC	3 cut(s)	192, 245, 355
AsuHPI	GGTGA	2 cut(s)	87, 527
BanII	GRGCYC	1 cut(s)	498
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	3 cut(s)	665, 892, 1017
BccI	CCATC	2 cut(s)	72, 851
BciT130I	CCWGG	2 cut(s)	359, 924
BcoDI	GTCTC	3 cut(s)	206, 482, 938
BfmI	CTRYAG	1 cut(s)	651
BfuAI	ACCTGC	2 cut(s)	659, 755
BisI	GCNGC	4 cut(s)	159, 654, 906, 1006
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	4 cut(s)	160, 655, 907, 1007
Bme1390I	CCNGG	2 cut(s)	359, 924
BmgT120I	GGNCC	3 cut(s)	192, 245, 355
BmrFI	CCNGG	2 cut(s)	359, 924
BmrI	ACTGGG	2 cut(s)	199, 582
BmsI	GCATC	1 cut(s)	985
BmuI	ACTGGG	2 cut(s)	199, 582
BpmI	CTGGAG	3 cut(s)	158, 380, 1020
Bpu10I	CCTNAGC	2 cut(s)	347, 713
Bpu1102I	GCTNAGC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	357, 479
BsaXI	ACNNNNNCTCC	2 cut(s)	947, 977
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	4 cut(s)	194, 412, 577, 622
Bse3DI	GCAATG	1 cut(s)	630
BseBI	CCWGG	2 cut(s)	359, 924
BseDI	CCNNGG	2 cut(s)	357, 479
BseGI	GGATG	3 cut(s)	706, 862, 883
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	1 cut(s)	630
BseMII	CTCAG	5 cut(s)	168, 180, 477, 483, 822
BseNI	ACTGG	4 cut(s)	194, 412, 577, 622
BseRI	GAGGAG	3 cut(s)	154, 377, 415
BseXI	GCAGC	3 cut(s)	665, 892, 1017
BsgI	GTGCAG	2 cut(s)	286, 701
BshFI	GGCC	5 cut(s)	194, 246, 356, 406, 484
BsiHKAI	GWGCWC	1 cut(s)	498
BslFI	GGGAC	3 cut(s)	455, 583, 628
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	3 cut(s)	206, 482, 938
BsmFI	GGGAC	3 cut(s)	455, 583, 628
BsnI	GGCC	5 cut(s)	194, 246, 356, 406, 484
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp143I	GATC	3 cut(s)	273, 722, 880
Bsp1720I	GCTNAGC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	5 cut(s)	194, 246, 356, 406, 484
BspCNI	CTCAG	5 cut(s)	167, 179, 478, 484, 821
BspMAI	CTGCAG	1 cut(s)	655
BspMI	ACCTGC	2 cut(s)	659, 755
BspPI	GGATC	1 cut(s)	730
BspQI	GCTCTTC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	630
BsrI	ACTGG	4 cut(s)	194, 412, 577, 622
BssECI	CCNNGG	2 cut(s)	357, 479
BssMI	GATC	3 cut(s)	273, 722, 880
BssT1I	CCWWGG	1 cut(s)	479
Bst2UI	CCWGG	2 cut(s)	359, 924
Bst6I	CTCTTC	3 cut(s)	52, 85, 390
BstDEI	CTNAG	8 cut(s)	8, 154, 166, 347, 486, 492, 713, 808
BstF5I	GGATG	3 cut(s)	706, 862, 883
BstKTI	GATC	3 cut(s)	276, 725, 883
BstMAI	GTCTC	3 cut(s)	206, 482, 938
BstMBI	GATC	3 cut(s)	273, 722, 880
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNI	CCWGG	2 cut(s)	359, 924
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	357, 922
BstSFI	CTRYAG	1 cut(s)	651
BstV1I	GCAGC	3 cut(s)	665, 892, 1017
BstX2I	RGATCY	1 cut(s)	722
BstYI	RGATCY	1 cut(s)	722
BsuRI	GGCC	5 cut(s)	194, 246, 356, 406, 484
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	3 cut(s)	706, 862, 883
BtsI	GCAGTG	1 cut(s)	968
BtsIMutI	CAGTG	1 cut(s)	968
BveI	ACCTGC	2 cut(s)	659, 755
Cfr13I	GGNCC	3 cut(s)	192, 245, 355
CseI	GACGC	1 cut(s)	302
CsiI	ACCWGGT	1 cut(s)	922
Csp6I	GTAC	1 cut(s)	982
CspCI	CAANNNNNGTGG	2 cut(s)	210, 245
CviAII	CATG	6 cut(s)	185, 286, 373, 836, 874, 985
CviQI	GTAC	1 cut(s)	982
DdeI	CTNAG	8 cut(s)	8, 154, 166, 347, 486, 492, 713, 808
DpnI	GATC	3 cut(s)	275, 724, 882
DpnII	GATC	3 cut(s)	273, 722, 880
Eam1104I	CTCTTC	3 cut(s)	52, 85, 390
EarI	CTCTTC	3 cut(s)	52, 85, 390
Ecl136II	GAGCTC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	479
Eco147I	AGGCCT	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	498
Eco32I	GATATC	1 cut(s)	805
Eco53kI	GAGCTC	1 cut(s)	496
Eco57I	CTGAAG	2 cut(s)	158, 843
EcoICRI	GAGCTC	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	357, 922
EcoRV	GATATC	1 cut(s)	805
EcoT14I	CCWWGG	1 cut(s)	479
EcoT38I	GRGCYC	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	6 cut(s)	188, 289, 376, 839, 877, 988
FalI	AAGNNNNNCTT	3 cut(s)	28, 190, 222
FaqI	GGGAC	3 cut(s)	455, 583, 628
FatI	CATG	6 cut(s)	184, 285, 372, 835, 873, 984
Fnu4HI	GCNGC	4 cut(s)	159, 654, 906, 1006
FokI	GGATG	3 cut(s)	713, 869, 890
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	4 cut(s)	159, 654, 906, 1006
GluI	GCNGC	4 cut(s)	159, 654, 906, 1006
GsuI	CTGGAG	3 cut(s)	158, 380, 1020
HaeIII	GGCC	5 cut(s)	194, 246, 356, 406, 484
HgaI	GACGC	1 cut(s)	302
Hin1II	CATG	6 cut(s)	188, 289, 376, 839, 877, 988
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	10
HinfI	GANTC	5 cut(s)	251, 308, 627, 646, 1065
HphI	GGTGA	2 cut(s)	87, 527
Hpy166II	GTNNAC	4 cut(s)	222, 232, 695, 758
Hpy188I	TCNGA	3 cut(s)	138, 169, 313
Hpy188III	TCNNGA	3 cut(s)	175, 461, 1031
Hpy8I	GTNNAC	4 cut(s)	222, 232, 695, 758
HpyAV	CCTTC	4 cut(s)	308, 458, 530, 746
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	8 cut(s)	267, 584, 635, 653, 682, 851, 897, 966
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	8 cut(s)	8, 154, 166, 347, 486, 492, 713, 808
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	6 cut(s)	188, 289, 376, 839, 877, 988
Kzo9I	GATC	3 cut(s)	273, 722, 880
LguI	GCTCTTC	1 cut(s)	85
LmnI	GCTCC	3 cut(s)	74, 364, 709
Lsp1109I	GCAGC	3 cut(s)	665, 892, 1017
LweI	GCATC	1 cut(s)	985
MabI	ACCWGGT	1 cut(s)	922
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	3 cut(s)	52, 797, 1057
MalI	GATC	3 cut(s)	275, 724, 882
MboI	GATC	3 cut(s)	273, 722, 880
MboII	GAAGA	6 cut(s)	39, 72, 75, 314, 317, 407
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	1 cut(s)	722
MhlI	GDGCHC	1 cut(s)	498
MluCI	AATT	3 cut(s)	474, 585, 1015
MlyI	GAGTC	3 cut(s)	245, 636, 655
MmeI	TCCRAC	1 cut(s)	808
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	5 cut(s)	39, 542, 675, 740, 1047
MspR9I	CCNGG	2 cut(s)	359, 924
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	2 cut(s)	359, 924
MwoI	GCNNNNNNNGC	1 cut(s)	75
NdeII	GATC	3 cut(s)	273, 722, 880
NlaIII	CATG	6 cut(s)	188, 289, 376, 839, 877, 988
NmuCI	GTSAC	2 cut(s)	52, 797
NspI	RCATGY	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	484
PciI	ACATGT	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	308, 1065
PkrI	GCNGC	4 cut(s)	160, 655, 907, 1007
PleI	GAGTC	3 cut(s)	245, 635, 654
PpsI	GAGTC	3 cut(s)	245, 635, 654
PscI	ACATGT	1 cut(s)	372
PshBI	ATTAAT	1 cut(s)	1047
Psp124BI	GAGCTC	1 cut(s)	498
Psp1406I	AACGTT	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	357, 922
PspGI	CCWGG	2 cut(s)	357, 922
PspPI	GGNCC	3 cut(s)	192, 245, 355
PstI	CTGCAG	1 cut(s)	655
PsuI	RGATCY	1 cut(s)	722
RsaI	GTAC	1 cut(s)	983
RsaNI	GTAC	1 cut(s)	982
SacI	GAGCTC	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	85
SaqAI	TTAA	5 cut(s)	39, 542, 675, 740, 1047
SatI	GCNGC	4 cut(s)	159, 654, 906, 1006
Sau3AI	GATC	3 cut(s)	273, 722, 880
Sau96I	GGNCC	3 cut(s)	192, 245, 355
SchI	GAGTC	3 cut(s)	245, 636, 655
ScrFI	CCNGG	2 cut(s)	359, 924
SduI	GDGCHC	1 cut(s)	498
SexAI	ACCWGGT	1 cut(s)	922
SfaNI	GCATC	1 cut(s)	985
SfcI	CTRYAG	1 cut(s)	651
Sse9I	AATT	3 cut(s)	474, 585, 1015
SseBI	AGGCCT	1 cut(s)	484
SsiI	CCGC	1 cut(s)	159
SstI	GAGCTC	1 cut(s)	498
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	2 cut(s)	357, 922
StyI	CCWWGG	1 cut(s)	479
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	1 cut(s)	300
TasI	AATT	3 cut(s)	474, 585, 1015
TatI	WGTACW	1 cut(s)	981
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	2 cut(s)	308, 1065
Tru1I	TTAA	5 cut(s)	39, 542, 675, 740, 1047
Tru9I	TTAA	5 cut(s)	39, 542, 675, 740, 1047
TscAI	CASTG	1 cut(s)	968
TseFI	GTSAC	2 cut(s)	52, 797
TseI	GCWGC	3 cut(s)	653, 905, 1005
Tsp45I	GTSAC	2 cut(s)	52, 797
TspDTI	ATGAA	3 cut(s)	17, 549, 852
TspRI	CASTG	1 cut(s)	968
VspI	ATTAAT	1 cut(s)	1047
XceI	RCATGY	1 cut(s)	376
XcmI	CCANNNNNNNNNTGG	2 cut(s)	419, 850
XmnI	GAANNNNTTC	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.