Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003404

Physical Location & Seq

Genomic Coordinates Reverse (-)

20652267 .. 20654399

Gene Structure 2133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG188200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAAGCTAAGCCTCACTCCAAAACTCTCAACCTTCCTTAAACCCTCTCTTGCTTCTACTCCCTTCCGTCGCTCTCTTTGCTCTTCTTCACCATCACCACCACCACCACCACCCATTTCTCTAAAAGCCCAAACCCCTCTCTTTCTGAGACCACCCATTCACTCAGCCACCTCCTCAGACCTCCAGCAATGGCAGGACTGGGCCAAAACCCTCGCTTCCTCAGTTGGGTCGACCTTCGCCGACTCCGACAACGGCCCGGACTCGACCCTTTTGCTCAGAGAGCTCAACTGGCTCGTAGACGATGCAGTTCAACAAGGAATCGAAAATGGTCAAAGAAAAATTAGATTGAGAGTGAGTCTGGAGGAGCTGTACTTGTTGTGGAAGCAGAGGATTGAAGAGAGGAAGCCCTTTCAGTACATTGTTGGGTGTGAGCATTGGAGGGAGCTGGTGCTGTGTGTTCAAGAAGGGGTTTTGATTCCGAGGCCGGAGACTGAGCTCATTGTGGATTTGGTGGGTGATGTGGTGAAGGGTGAGGAGGGTTTAAGAGAGGGTTTGTGGGCAGATTTGGGGACTGGGAGTGGGGCTATTGCTATTGGGATTGGGAGGGTTTTGGGGACTGGTGGTGGCAGAGTCATTGCAACTGATTTGAGTCCCACTGCGATTTCGGTTGCGGGGTTTAATGTGGAGAGGTATGGTTTGCAGGTTAGTGTTTGGCATTGTGCTTATAGGTTAGAAGAGTTGGGAAATTTGGATTGCAAAATGACATGGTTGCAGTTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS Methyltransf_31 PrmA

Protein Analysis

260

Amino Acids

28.64

Weight (kDa)

5.72

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64150
fragaria_vesca	FvH4_3g16091
malus_domestica	MD05G1214000.v1.1 MD05G1214300.v1.1 MD10G1197800.v1.1
prunus_persica	Prupe.4G144100_v2.0.a1
pyrus_communis	pycom10g17050
rosa_chinensis	RchiOBHm_Chr5g0027061 RchiOBHm_Chr6g0281451
rosa_laevigata	RLG00000009431 RLG00000032986
rosa_multiflora	Rmu_co7998874.1_g000001 Rmu_sc0000847.1_g000007 Rmu_sc0000882.1_g000023 Rmu_sc0001866.1_g000008 Rmu_sc0006065.1_g000029
rosa_roxburghii	Rroxscaffold_1G00052430 Rroxscaffold_2G00135560 Rroxscaffold_6G00430700
rosa_rugosa	Rorug02G0601800 Rorug05G0096900 Rorug05G0097000
rosa_samantha	Rh1CG018500 Rh1DG015600 Rh3AG054200 Rh3BG055600 Rh3CG054900 Rh4BG038500 Rh5AG190600 Rh5BG188200 Rh5CG208000 Rh5DG190000 Rh5DG541600 Rh6BG255900 Rh6DG247400
rosa_wichuraiana	Rw5G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	691
AccI	GTMKAC	2 cut(s)	230, 297
AciI	CCGC	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	745
AfaI	GTAC	2 cut(s)	371, 416
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	3 cut(s)	311, 395, 461
AluBI	AGCT	5 cut(s)	7, 283, 367, 445, 496
AluI	AGCT	5 cut(s)	7, 283, 367, 445, 496
Alw21I	GWGCWC	2 cut(s)	285, 498
Alw26I	GTCTC	2 cut(s)	142, 482
AoxI	GGCC	3 cut(s)	201, 253, 482
ApoI	RAATTY	1 cut(s)	745
AspS9I	GGNCC	2 cut(s)	201, 254
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	5 cut(s)	81, 87, 527, 535, 542
BanII	GRGCYC	2 cut(s)	285, 498
Bbv12I	GWGCWC	2 cut(s)	285, 498
BccI	CCATC	1 cut(s)	100
BceAI	ACGGC	1 cut(s)	268
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	142, 482
BfuAI	ACCTGC	1 cut(s)	691
BlpI	GCTNAGC	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	257
BmgT120I	GGNCC	2 cut(s)	201, 254
BmrFI	CCNGG	1 cut(s)	257
BmrI	ACTGGG	2 cut(s)	208, 582
BmsI	GCATC	1 cut(s)	292
BmuI	ACTGGG	2 cut(s)	208, 582
BpmI	CTGGAG	2 cut(s)	167, 380
Bpu1102I	GCTNAGC	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	479
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	4 cut(s)	203, 293, 577, 622
Bse3DI	GCAATG	2 cut(s)	194, 633
BseDI	CCNNGG	1 cut(s)	479
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMI	GCAATG	2 cut(s)	194, 633
BseMII	CTCAG	6 cut(s)	137, 177, 189, 234, 289, 483
BseNI	ACTGG	4 cut(s)	203, 293, 577, 622
BseRI	GAGGAG	3 cut(s)	163, 377, 548
BshFI	GGCC	3 cut(s)	203, 255, 484
BsiHKAI	GWGCWC	2 cut(s)	285, 498
BsiSI	CCGG	2 cut(s)	257, 485
BslFI	GGGAC	3 cut(s)	583, 628, 636
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	2 cut(s)	142, 482
BsmFI	GGGAC	3 cut(s)	583, 628, 636
BsnI	GGCC	3 cut(s)	203, 255, 484
Bso31I	GGTCTC	1 cut(s)	142
Bsp1286I	GDGCHC	2 cut(s)	285, 498
Bsp1720I	GCTNAGC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	671
BspANI	GGCC	3 cut(s)	203, 255, 484
BspCNI	CTCAG	6 cut(s)	138, 176, 188, 233, 288, 484
BspMI	ACCTGC	1 cut(s)	691
BspQI	GCTCTTC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	142
BsrDI	GCAATG	2 cut(s)	194, 633
BsrI	ACTGG	4 cut(s)	203, 293, 577, 622
BssECI	CCNNGG	1 cut(s)	479
Bst6I	CTCTTC	3 cut(s)	88, 390, 729
BstDEI	CTNAG	7 cut(s)	8, 146, 163, 175, 220, 275, 492
BstMAI	GTCTC	2 cut(s)	142, 482
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 280, 289
BstSCI	CCNGG	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	203, 255, 484
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	1 cut(s)	654
BveI	ACCTGC	1 cut(s)	691
Cfr13I	GGNCC	2 cut(s)	201, 254
Csp6I	GTAC	2 cut(s)	370, 415
CviAII	CATG	1 cut(s)	765
CviQI	GTAC	2 cut(s)	370, 415
DdeI	CTNAG	7 cut(s)	8, 146, 163, 175, 220, 275, 492
Eam1104I	CTCTTC	3 cut(s)	88, 390, 729
EarI	CTCTTC	3 cut(s)	88, 390, 729
Ecl136II	GAGCTC	2 cut(s)	283, 496
Eco24I	GRGCYC	2 cut(s)	285, 498
Eco31I	GGTCTC	1 cut(s)	142
Eco53kI	GAGCTC	2 cut(s)	283, 496
EcoICRI	GAGCTC	2 cut(s)	283, 496
EcoT38I	GRGCYC	2 cut(s)	285, 498
FaeI	CATG	1 cut(s)	768
FaiI	YATR	3 cut(s)	693, 726, 766
FaqI	GGGAC	3 cut(s)	583, 628, 636
FatI	CATG	1 cut(s)	764
FauI	CCCGC	1 cut(s)	664
FblI	GTMKAC	2 cut(s)	230, 297
FriOI	GRGCYC	2 cut(s)	285, 498
GsuI	CTGGAG	2 cut(s)	167, 380
HaeIII	GGCC	3 cut(s)	203, 255, 484
HapII	CCGG	2 cut(s)	257, 485
Hin1II	CATG	1 cut(s)	768
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	7 cut(s)	242, 260, 318, 355, 475, 630, 649
HpaII	CCGG	2 cut(s)	257, 485
HphI	GGTGA	5 cut(s)	81, 87, 527, 535, 542
Hpy166II	GTNNAC	2 cut(s)	231, 298
Hpy188I	TCNGA	5 cut(s)	147, 178, 247, 278, 480
Hpy188III	TCNNGA	2 cut(s)	359, 461
Hpy8I	GTNNAC	2 cut(s)	231, 298
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	5 cut(s)	43, 73, 244, 458, 520
HpyCH4V	TGCA	5 cut(s)	305, 638, 700, 756, 772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 280, 289
HpyF3I	CTNAG	7 cut(s)	8, 146, 163, 175, 220, 275, 492
Hsp92II	CATG	1 cut(s)	768
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	364, 442
LweI	GCATC	1 cut(s)	292
MboII	GAAGA	4 cut(s)	75, 78, 407, 746
MhlI	GDGCHC	2 cut(s)	285, 498
MluCI	AATT	2 cut(s)	339, 745
MlyI	GAGTC	5 cut(s)	236, 254, 364, 639, 658
MmeI	TCCRAC	1 cut(s)	270
MseI	TTAA	3 cut(s)	39, 542, 678
MspI	CCGG	2 cut(s)	257, 485
MspR9I	CCNGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	3 cut(s)	78, 280, 289
NciI	CCSGG	1 cut(s)	257
NlaIII	CATG	1 cut(s)	768
PciSI	GCTCTTC	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	318, 475
PleI	GAGTC	5 cut(s)	236, 254, 363, 638, 657
PpsI	GAGTC	5 cut(s)	236, 254, 363, 638, 657
Psp124BI	GAGCTC	2 cut(s)	285, 498
PspPI	GGNCC	2 cut(s)	201, 254
RsaI	GTAC	2 cut(s)	371, 416
RsaNI	GTAC	2 cut(s)	370, 415
SacI	GAGCTC	2 cut(s)	285, 498
SalI	GTCGAC	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	3 cut(s)	39, 542, 678
Sau96I	GGNCC	2 cut(s)	201, 254
SchI	GAGTC	5 cut(s)	236, 254, 364, 639, 658
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	285, 498
SfaNI	GCATC	1 cut(s)	292
Sse9I	AATT	2 cut(s)	339, 745
SsiI	CCGC	1 cut(s)	671
SstI	GAGCTC	2 cut(s)	285, 498
StyD4I	CCNGG	1 cut(s)	255
TaqI	TCGA	3 cut(s)	230, 263, 321
TasI	AATT	2 cut(s)	339, 745
TatI	WGTACW	2 cut(s)	369, 414
TfiI	GAWTC	2 cut(s)	318, 475
Tru1I	TTAA	3 cut(s)	39, 542, 678
Tru9I	TTAA	3 cut(s)	39, 542, 678
TscAI	CASTG	1 cut(s)	661
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	661
XapI	RAATTY	1 cut(s)	745
XmiI	GTMKAC	2 cut(s)	230, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.