FvH4_1g13970

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003264
Physical Location & Seq
Forward (+)
7707266 .. 7709055
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13970.t1

Sequence Viewer

Length: 1443 bp
ATGGCGGAGATGAGCTCAAAACCCCATGCCTTGCTTGTCCCAAGCCCCATGATGGGGCACCTCATCCCCTTGATGGAGCTTGCAAGCTCCCTAGTCACCCACCACAACTTCCACGTCACAGTCATCGCCGTTTCATCCAACTCCTCTCCTGAACTATCCCAGGTCATCCAATCCGCCAAGACCAAGAAGCTCTGCGACATCATTGAGCTCCCGGCGCCCTCCGACCAGGCTTCCAACATGGCCGGTTCAGTCTTCACGCACCTCTCCGCCGTCATGCACGATGCCAGATCACCTCTCCGGTCTGCAATCTCGCTCTTGGAGGTCAAACCAGCCGCGATGATCGTCGATATTTTCGGCACTCCCGCCCTCACCGTGGCAGAAGAGTTCCATATGCTCAAGTATGTGATGGTAGCTTCCTGTGCTAGGCCATTGACCTTGCTTCTATATGCTCCAGTTCTAGATAAACAGATACAAGGAGAGTATTTGGATCGCGAAGAGCTTCTGGAGATTCCGGGTTGCAAAGCGGTTCGACCTGAAGATGTGGCTAAGCCGTTGATGAATAGGAAGGATAGGGAATACGAGGCTTACTTAAGAAAAGCGAACGATATCGCTTCAATGAGTGACGGGATCATGATCAACACATGGGAGGATCTCGAAGCCGAGTCTCTTAAGGCTATGAGAGAGCATCCAGAGTGGAAGAAGATACTTCAGGTTCCGGTTTACACTATCGGACCTCTGTTTAGATCGGCAGGGCAGCCCGGTGGTGGTTCGACAGCTCCGAGGAGTGAGTTGTTGGATTGGCTGGATAAGCAACCTAGAGAGTCTGTGCTTTACGTAGCGTTTGGGAGTATGGGGGTTCTTTCGGCTGAACAGATCATAGAGATGGCTTGGGGTTTGGAGCTTAGTAAGCAGAGGTTTATATGGGTGGTGCACCCACCAAGCAAAAGATCAGGTGATAAAGGGAATGACATTTCGGAGTATTTACCTGAGGGGTTCATGGCTCGAACTCATGAAACGGGTGTGGTAGTCACCACTTGGGCTCCTCAGTCGGAAATCTTGGCTCATTCGTCGGTTGGAGGGACTCTCTCGCACTGCGGGTGGAACTCATCGGTGGAGAGTATACTGAATGGTGTGCCGATGATCGCATGGCCGCTATATGCAGAGCAGACGATGATTGCCACACAGCTGGTGGAGGAGCTCAAGGTGGCGATTAAACCTAAAGAGTTGCCAGCAAAAGCAGTAGCAGGGAGGGAGGAGATTGAGATGTTGGTGAGGAAGATTATGAAGGAGAAGGAAGGAGATGAAATGAGAGCAAGAGTTAAAGAACTGAAAGTAAGTGGCGAGAAAGCTCTGAGTGAGGGAGGGTCTTCTTTCAATATGCTATCTGAATTGTCAAGGCTATGTAAGATCAAAACCGAACAGCAAGCAGGCCAGAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

481

Amino Acids

52.92

Weight (kDa)

5.88

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 272 - 398 7.1e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 57, 214
AccI GTMKAC 1 cut(s) 1120
AccII CGCG 2 cut(s) 335, 492
AciI CCGC 8 cut(s) 5, 174, 267, 333, 363, 524, 1095, 1151
AclWI GGATC 3 cut(s) 495, 635, 657
AcoI YGGCCR 2 cut(s) 240, 1148
AcuI CTGAAG 2 cut(s) 555, 692
AcyI GRCGYC 1 cut(s) 215
AfiI CCNNNNNNNGG 7 cut(s) 52, 53, 54, 73, 373, 423, 764
AflII CTTAAG 2 cut(s) 589, 668
AgsI TTSAA 2 cut(s) 615, 1375
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 2 cut(s) 159, 225
Alw21I GWGCWC 4 cut(s) 17, 210, 933, 1200
Alw26I GTCTC 1 cut(s) 669
Alw44I GTGCAC 1 cut(s) 929
AlwI GGATC 3 cut(s) 495, 635, 657
AoxI GGCC 4 cut(s) 240, 425, 1148, 1429
ApaLI GTGCAC 1 cut(s) 929
ApeKI GCWGC 1 cut(s) 754
Asp700I GAANNNNTTC 1 cut(s) 498
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 731
AsuC2I CCSGG 3 cut(s) 212, 513, 759
AsuHPI GGTGA 6 cut(s) 88, 282, 361, 965, 1021, 1282
AvaII GGWCC 1 cut(s) 731
AxyI CCTNAGG 1 cut(s) 987
BaeGI GKGCMC 2 cut(s) 60, 933
BanI GGYRCC 2 cut(s) 57, 214
BanII GRGCYC 4 cut(s) 17, 210, 1042, 1200
BbsI GAAGAC 2 cut(s) 244, 1359
Bbv12I GWGCWC 4 cut(s) 17, 210, 933, 1200
BbvI GCAGC 1 cut(s) 766
BccI CCATC 4 cut(s) 46, 67, 400, 877
BceAI ACGGC 3 cut(s) 113, 254, 535
BciT130I CCWGG 2 cut(s) 161, 227
BclI TGATCA 1 cut(s) 633
BcnI CCSGG 3 cut(s) 212, 513, 759
BcoDI GTCTC 1 cut(s) 669
BfaI CTAG 4 cut(s) 92, 423, 458, 816
BfoI RGCGCY 1 cut(s) 218
BfrI CTTAAG 2 cut(s) 589, 668
BisI GCNGC 3 cut(s) 333, 755, 1151
BlpI GCTNAGC 1 cut(s) 546
BlsI GCNGC 3 cut(s) 334, 756, 1152
Bme1390I CCNGG 5 cut(s) 161, 212, 227, 513, 759
Bme18I GGWCC 1 cut(s) 731
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 731
BmiI GGNNCC 4 cut(s) 59, 216, 714, 1041
BmrFI CCNGG 5 cut(s) 161, 212, 227, 513, 759
BmsI GCATC 2 cut(s) 271, 694
BpiI GAAGAC 2 cut(s) 244, 1359
BplI GAGNNNNNCTC 3 cut(s) 31, 1068, 1100
BpmI CTGGAG 2 cut(s) 435, 524
Bpu1102I GCTNAGC 1 cut(s) 546
BpuEI CTTGAG 2 cut(s) 380, 1184
BpuMI CCSGG 3 cut(s) 212, 513, 759
BsaAI YACGTR 1 cut(s) 835
BsaBI GATNNNNATC 1 cut(s) 632
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 3 cut(s) 159, 372, 779
BsaWI WCCGGW 2 cut(s) 297, 715
BsaXI ACNNNNNCTCC 2 cut(s) 1024, 1054
Bsc4I CCNNNNNNNGG 7 cut(s) 52, 53, 54, 73, 373, 423, 764
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 452
Bse21I CCTNAGG 1 cut(s) 987
Bse8I GATNNNNATC 1 cut(s) 632
BseBI CCWGG 2 cut(s) 161, 227
BseDI CCNNGG 3 cut(s) 159, 372, 779
BseGI GGATG 4 cut(s) 63, 134, 165, 685
BseJI GATNNNNATC 1 cut(s) 632
BseLI CCNNNNNNNGG 7 cut(s) 52, 53, 54, 73, 373, 423, 764
BseMII CTCAG 3 cut(s) 978, 1058, 1343
BseNI ACTGG 1 cut(s) 452
BseRI GAGGAG 5 cut(s) 133, 796, 1032, 1208, 1268
BseSI GKGCMC 2 cut(s) 60, 933
BseXI GCAGC 1 cut(s) 766
Bsh1236I CGCG 2 cut(s) 335, 492
BshFI GGCC 4 cut(s) 242, 427, 1150, 1431
BshNI GGYRCC 2 cut(s) 57, 214
BsiHKAI GWGCWC 4 cut(s) 17, 210, 933, 1200
BsiSI CCGG 6 cut(s) 212, 243, 298, 512, 716, 759
BslFI GGGAC 2 cut(s) 23, 1093
BslI CCNNNNNNNGG 7 cut(s) 52, 53, 54, 73, 373, 423, 764
BsmAI GTCTC 1 cut(s) 669
BsmFI GGGAC 2 cut(s) 23, 1093
BsnI GGCC 4 cut(s) 242, 427, 1150, 1431
Bsp1286I GDGCHC 6 cut(s) 17, 60, 210, 933, 1042, 1200
Bsp1720I GCTNAGC 1 cut(s) 546
Bsp68I TCGCGA 1 cut(s) 492
BspACI CCGC 8 cut(s) 5, 174, 267, 333, 363, 524, 1095, 1151
BspANI GGCC 4 cut(s) 242, 427, 1150, 1431
BspCNI CTCAG 3 cut(s) 979, 1057, 1344
BspFNI CGCG 2 cut(s) 335, 492
BspHI TCATGA 2 cut(s) 630, 1009
BspLI GGNNCC 4 cut(s) 59, 216, 714, 1041
BspPI GGATC 3 cut(s) 495, 635, 657
BspQI GCTCTTC 1 cut(s) 489
BspT107I GGYRCC 2 cut(s) 57, 214
BspTI CTTAAG 2 cut(s) 589, 668
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 1 cut(s) 452
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 159, 372, 779
BssNAI GTATAC 1 cut(s) 1121
BssNI GRCGYC 1 cut(s) 215
Bst1107I GTATAC 1 cut(s) 1121
Bst2UI CCWGG 2 cut(s) 161, 227
Bst4CI ACNGT 2 cut(s) 121, 373
Bst6I CTCTTC 2 cut(s) 375, 489
BstACI GRCGYC 1 cut(s) 215
BstAFI CTTAAG 2 cut(s) 589, 668
BstBAI YACGTR 1 cut(s) 835
BstC8I GCNNGC 5 cut(s) 81, 85, 1230, 1425, 1429
BstDEI CTNAG 5 cut(s) 546, 902, 987, 1044, 1352
BstDSI CCRYGG 1 cut(s) 372
BstENI CCTNNNNNAGG 1 cut(s) 421
BstF5I GGATG 4 cut(s) 63, 134, 165, 685
BstFNI CGCG 2 cut(s) 335, 492
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 669
BstMWI GCNNNNNNNGC 4 cut(s) 214, 419, 808, 907
BstNI CCWGG 2 cut(s) 161, 227
BstSCI CCNGG 5 cut(s) 159, 210, 225, 511, 757
BstSLI GKGCMC 2 cut(s) 60, 933
BstSNI TACGTA 1 cut(s) 835
BstUI CGCG 2 cut(s) 335, 492
BstV1I GCAGC 1 cut(s) 766
BstV2I GAAGAC 2 cut(s) 244, 1359
BstX2I RGATCY 1 cut(s) 649
BstXI CCANNNNNNTGG 1 cut(s) 1186
BstYI RGATCY 1 cut(s) 649
BstZ17I GTATAC 1 cut(s) 1121
Bsu36I CCTNAGG 1 cut(s) 987
BsuRI GGCC 4 cut(s) 242, 427, 1150, 1431
BtgI CCRYGG 1 cut(s) 372
BtgZI GCGATG 2 cut(s) 109, 350
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 4 cut(s) 63, 134, 165, 685
BtsI GCAGTG 1 cut(s) 1090
BtsIMutI CAGTG 1 cut(s) 1090
BtuMI TCGCGA 1 cut(s) 492
Cac8I GCNNGC 5 cut(s) 81, 85, 1230, 1425, 1429
CciI TCATGA 2 cut(s) 630, 1009
CfoI GCGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 731
CviAII CATG 9 cut(s) 26, 49, 238, 274, 631, 642, 997, 1010, 1146
DdeI CTNAG 5 cut(s) 546, 902, 987, 1044, 1352
DinI GGCGCC 1 cut(s) 216
EaeI YGGCCR 2 cut(s) 240, 1148
Eam1104I CTCTTC 2 cut(s) 375, 489
EarI CTCTTC 2 cut(s) 375, 489
EciI GGCGGA 3 cut(s) 20, 163, 256
Ecl136II GAGCTC 3 cut(s) 15, 208, 1198
Eco105I TACGTA 1 cut(s) 835
Eco24I GRGCYC 4 cut(s) 17, 210, 1042, 1200
Eco32I GATATC 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 731
Eco53kI GAGCTC 3 cut(s) 15, 208, 1198
Eco57I CTGAAG 2 cut(s) 555, 692
Eco81I CCTNAGG 1 cut(s) 987
EcoICRI GAGCTC 3 cut(s) 15, 208, 1198
EcoNI CCTNNNNNAGG 1 cut(s) 421
EcoRII CCWGG 2 cut(s) 159, 225
EcoRV GATATC 1 cut(s) 607
EcoT38I GRGCYC 4 cut(s) 17, 210, 1042, 1200
EgeI GGCGCC 1 cut(s) 216
EheI GGCGCC 1 cut(s) 216
FaeI CATG 9 cut(s) 29, 52, 241, 277, 634, 645, 1000, 1013, 1149
FaqI GGGAC 2 cut(s) 23, 1093
FatI CATG 9 cut(s) 25, 48, 237, 273, 630, 641, 996, 1009, 1145
FauI CCCGC 2 cut(s) 370, 1088
FauNDI CATATG 1 cut(s) 390
FbaI TGATCA 1 cut(s) 633
FblI GTMKAC 1 cut(s) 1120
Fnu4HI GCNGC 3 cut(s) 333, 755, 1151
FokI GGATG 4 cut(s) 50, 121, 152, 672
FriOI GRGCYC 4 cut(s) 17, 210, 1042, 1200
Fsp4HI GCNGC 3 cut(s) 333, 755, 1151
FspBI CTAG 4 cut(s) 92, 423, 458, 816
GlaI GCGC 1 cut(s) 216
GluI GCNGC 3 cut(s) 333, 755, 1151
GsuI CTGGAG 2 cut(s) 435, 524
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 4 cut(s) 242, 427, 1150, 1431
HapII CCGG 6 cut(s) 212, 243, 298, 512, 716, 759
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 9 cut(s) 29, 52, 241, 277, 634, 645, 1000, 1013, 1149
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HinfI GANTC 4 cut(s) 508, 662, 821, 1081
HpaII CCGG 6 cut(s) 212, 243, 298, 512, 716, 759
HphI GGTGA 6 cut(s) 88, 282, 361, 965, 1021, 1282
Hpy166II GTNNAC 3 cut(s) 721, 931, 1121
Hpy188I TCNGA 7 cut(s) 223, 731, 780, 976, 1051, 1353, 1387
Hpy188III TCNNGA 8 cut(s) 149, 458, 491, 503, 631, 653, 689, 1010
Hpy8I GTNNAC 3 cut(s) 721, 931, 1121
Hpy99I CGWCG 2 cut(s) 347, 1072
HpyAV CCTTC 4 cut(s) 559, 1279, 1285, 1289
HpyCH4III ACNGT 2 cut(s) 121, 373
HpyCH4IV ACGT 2 cut(s) 114, 834
HpyCH4V TGCA 6 cut(s) 83, 277, 305, 519, 931, 1160
HpyF10VI GCNNNNNNNGC 4 cut(s) 214, 419, 808, 907
HpyF3I CTNAG 5 cut(s) 546, 902, 987, 1044, 1352
HpySE526I ACGT 2 cut(s) 114, 834
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 9 cut(s) 29, 52, 241, 277, 634, 645, 1000, 1013, 1149
HspAI GCGC 1 cut(s) 215
KasI GGCGCC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 633
LguI GCTCTTC 1 cut(s) 489
LmnI GCTCC 8 cut(s) 76, 92, 213, 454, 781, 898, 1045, 1195
Lsp1109I GCAGC 1 cut(s) 766
LweI GCATC 2 cut(s) 271, 694
MaeI CTAG 4 cut(s) 92, 423, 458, 816
MaeII ACGT 2 cut(s) 114, 834
MaeIII GTNAC 4 cut(s) 94, 115, 620, 1027
MboII GAAGA 8 cut(s) 244, 392, 506, 548, 709, 712, 1288, 1359
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 6 cut(s) 17, 60, 210, 933, 1042, 1200
MluCI AATT 1 cut(s) 1388
Mly113I GGCGCC 1 cut(s) 215
MlyI GAGTC 3 cut(s) 671, 830, 1075
MmeI TCCRAC 6 cut(s) 162, 246, 258, 774, 1029, 1054
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 4 cut(s) 590, 669, 1212, 1320
MslI CAYNNNNRTG 1 cut(s) 881
MspA1I CMGCKG 1 cut(s) 1186
MspCI CTTAAG 2 cut(s) 589, 668
MspI CCGG 6 cut(s) 212, 243, 298, 512, 716, 759
MspR9I CCNGG 5 cut(s) 161, 212, 227, 513, 759
MvaI CCWGG 2 cut(s) 161, 227
MvnI CGCG 2 cut(s) 335, 492
MwoI GCNNNNNNNGC 4 cut(s) 214, 419, 808, 907
NarI GGCGCC 1 cut(s) 215
NciI CCSGG 3 cut(s) 212, 513, 759
NdeI CATATG 1 cut(s) 390
NlaIII CATG 9 cut(s) 29, 52, 241, 277, 634, 645, 1000, 1013, 1149
NlaIV GGNNCC 4 cut(s) 59, 216, 714, 1041
NmeAIII GCCGAG 1 cut(s) 685
NmuCI GTSAC 4 cut(s) 94, 115, 620, 1027
NruI TCGCGA 1 cut(s) 492
PagI TCATGA 2 cut(s) 630, 1009
PciSI GCTCTTC 1 cut(s) 489
PcsI WCGNNNNNNNCGW 1 cut(s) 776
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 1 cut(s) 508
PkrI GCNGC 3 cut(s) 334, 756, 1152
PleI GAGTC 3 cut(s) 670, 829, 1075
PluTI GGCGCC 1 cut(s) 218
PpsI GAGTC 3 cut(s) 670, 829, 1075
Ppu21I YACGTR 1 cut(s) 835
Psp124BI GAGCTC 3 cut(s) 17, 210, 1200
Psp6I CCWGG 2 cut(s) 159, 225
PspGI CCWGG 2 cut(s) 159, 225
PspN4I GGNNCC 4 cut(s) 59, 216, 714, 1041
PspPI GGNCC 1 cut(s) 731
PsuI RGATCY 1 cut(s) 649
PvuII CAGCTG 1 cut(s) 1186
RruI TCGCGA 1 cut(s) 492
RseI CAYNNNNRTG 1 cut(s) 881
SacI GAGCTC 3 cut(s) 17, 210, 1200
SapI GCTCTTC 1 cut(s) 489
SaqAI TTAA 4 cut(s) 590, 669, 1212, 1320
SatI GCNGC 3 cut(s) 333, 755, 1151
Sau96I GGNCC 1 cut(s) 731
SchI GAGTC 3 cut(s) 671, 830, 1075
ScrFI CCNGG 5 cut(s) 161, 212, 227, 513, 759
SduI GDGCHC 6 cut(s) 17, 60, 210, 933, 1042, 1200
SfaNI GCATC 2 cut(s) 271, 694
SfoI GGCGCC 1 cut(s) 216
SinI GGWCC 1 cut(s) 731
SmiMI CAYNNNNRTG 1 cut(s) 881
SmlI CTYRAG 4 cut(s) 395, 589, 668, 1199
SmoI CTYRAG 4 cut(s) 395, 589, 668, 1199
SnaBI TACGTA 1 cut(s) 835
Sse9I AATT 1 cut(s) 1388
SsiI CCGC 8 cut(s) 5, 174, 267, 333, 363, 524, 1095, 1151
SspDI GGCGCC 1 cut(s) 214
SspMI CTAG 4 cut(s) 92, 423, 458, 816
SstI GAGCTC 3 cut(s) 17, 210, 1200
StyD4I CCNGG 5 cut(s) 159, 210, 225, 511, 757
TaaI ACNGT 2 cut(s) 121, 373
TaiI ACGT 2 cut(s) 117, 837
TaqI TCGA 5 cut(s) 345, 529, 654, 770, 1003
TasI AATT 1 cut(s) 1388
TauI GCSGC 2 cut(s) 335, 1153
TfiI GAWTC 1 cut(s) 508
Tru1I TTAA 4 cut(s) 590, 669, 1212, 1320
Tru9I TTAA 4 cut(s) 590, 669, 1212, 1320
TscAI CASTG 1 cut(s) 1097
TseFI GTSAC 4 cut(s) 94, 115, 620, 1027
TseI GCWGC 1 cut(s) 754
Tsp45I GTSAC 4 cut(s) 94, 115, 620, 1027
TspDTI ATGAA 6 cut(s) 123, 572, 985, 1026, 1298, 1317
TspRI CASTG 1 cut(s) 1097
Vha464I CTTAAG 2 cut(s) 589, 668
VneI GTGCAC 1 cut(s) 929
VpaK11BI GGWCC 1 cut(s) 731
XagI CCTNNNNNAGG 1 cut(s) 421
XbaI TCTAGA 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 1186
XmiI GTMKAC 1 cut(s) 1120
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 4 cut(s) 92, 423, 458, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.