Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003264

Physical Location & Seq

Genomic Coordinates Reverse (-)

17251898 .. 17253679

Gene Structure 1782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG091500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGACTTCCATGGAGGACATGAGCTCAAAAGCATTTGTGCTGCTAGTACCCAGCCCCGGCATGGGACATCTCATACCTTTCTTGGAGCTCACCAACTGCCTCATCGCTCATCACAATTTCCACGCCACAGTCGTCGTCATTTCATCCAACACTTCTCCTGCACAATCTCAGGTCATCCAATCCGCCATGACCCCGAAACTTTTCGACATCATTGAGCTTCCACCACTAGACACGTCCGGCCAAGTCAACGCCGCTGGTTCAGTCTTCACACAGCTCCCGGCCATTATGCTTGATGCCCGGTCCTCTCTCTGGTCCGCCATCTCGGCCATGGACTTCAAGCCGGCAGCCATGATCGTCGATCTTTTCGGCACCGCTGTTCTTCCCGTGGCCGATGAGTTCCACATGCTCAAGTATGTAAGAGTCTCGTGTGCTTGGCCCCTTGCCCTGCTTTTATACGCTCCTATTCTAGATAAGGAGGTGGAAGGAGAATACTTGGATAAAAAAGAACCGCTCAAGATCCCGGGTTGCAAGCCTGTTCGACCGGAAGATGTTGTTAAGCCCATGATGAACAGAAAAGGTCCCGAATACGAGTCCTTCATACGTATTGGAGTAGAGATAGCCGAGATGAGTGATGGGATTTTGGTTAACACTTGGGAAGATCTGGAGTCGATAAGTCTTCGACCCATGAGAGAGGATCCAGAGTGGAAGCAGATCCTTAAGGTTCCGGTCCATACTTTCGGTCCCATGATTAGGCCGGCAGGGCGTTCCACTCCGAGGAGCGAGGTGTTGGGTTGGCTGGACATGCAGCCCAATGCCTCTGTGATTTACATTTCTTTTGGGAGTGGTGGGGTTCTGTCGGCTGATCAAATTACTGAGATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

294

Amino Acids

32.34

Weight (kDa)

5.01

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13970 FvH4_1g13990 FvH4_1g14000
rosa_chinensis	RchiOBHm_Chr2g0102291 RchiOBHm_Chr5g0049051
rosa_laevigata	RLG00000017143 RLG00000027915 RLG00000029969 RLG00000034587
rosa_multiflora	Rmu_co8035894.1_g000001 Rmu_sc0000530.1_g000029 Rmu_sc0005055.1_g000021 Rmu_sc0008757.1_g000011 Rmu_sc0030874.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032820 Rroxscaffold_2G00140590 Rroxscaffold_2G00140600 Rroxscaffold_4G00297540 Rroxscaffold_4G00322380
rosa_rugosa	Rorug01G0070700 Rorug01G0070800 Rorug01G0266200 Rorug01G0266200 Rorug02G0106200 Rorug05G0242800
rosa_samantha	Rh1AG279800 Rh1BG069800 Rh1CG263900 Rh1DG091500 Rh2BG160200 Rh2BG160300 Rh2CG159800 Rh5AG322500 Rh5BG332800 Rh5CG357900
rosa_wichuraiana	Rw1G024870 Rw5G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	368
AccBSI	CCGCTC	1 cut(s)	511
AciI	CCGC	5 cut(s)	183, 252, 315, 372, 509
AclWI	GGATC	4 cut(s)	511, 689, 702, 706
AcoI	YGGCCR	4 cut(s)	238, 279, 324, 387
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	6 cut(s)	56, 61, 62, 309, 750, 774
AflII	CTTAAG	1 cut(s)	716
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	337
AjiI	CACGTC	1 cut(s)	234
AluBI	AGCT	4 cut(s)	24, 88, 217, 274
AluI	AGCT	4 cut(s)	24, 88, 217, 274
Alw21I	GWGCWC	2 cut(s)	26, 90
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	4 cut(s)	511, 689, 702, 706
Ama87I	CYCGRG	1 cut(s)	520
AoxI	GGCC	6 cut(s)	238, 279, 324, 387, 434, 752
ApeKI	GCWGC	3 cut(s)	40, 344, 805
Asp700I	GAANNNNTTC	1 cut(s)	200
AspS9I	GGNCC	6 cut(s)	300, 312, 435, 578, 727, 740
AsuC2I	CCSGG	5 cut(s)	57, 278, 298, 521, 522
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	520
AvaII	GGWCC	5 cut(s)	300, 312, 578, 727, 740
BamHI	GGATCC	1 cut(s)	694
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	2 cut(s)	26, 90
BauI	CACGAG	1 cut(s)	424
BbsI	GAAGAC	2 cut(s)	256, 668
Bbv12I	GWGCWC	2 cut(s)	26, 90
BbvI	GCAGC	3 cut(s)	27, 356, 817
BccI	CCATC	3 cut(s)	326, 626, 871
BclI	TGATCA	1 cut(s)	862
BcnI	CCSGG	5 cut(s)	57, 278, 298, 521, 522
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	3 cut(s)	44, 227, 467
BfrI	CTTAAG	1 cut(s)	716
BglI	GCCNNNNNGGC	2 cut(s)	323, 760
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	4 cut(s)	41, 252, 345, 806
BlsI	GCNGC	4 cut(s)	42, 253, 346, 807
Bme1390I	CCNGG	5 cut(s)	57, 278, 298, 521, 522
Bme18I	GGWCC	5 cut(s)	300, 312, 578, 727, 740
BmeT110I	CYCGRG	1 cut(s)	520
BmgBI	CACGTC	1 cut(s)	234
BmgT120I	GGNCC	6 cut(s)	300, 312, 435, 578, 727, 740
BmiI	GGNNCC	6 cut(s)	370, 437, 580, 696, 723, 742
BmrFI	CCNGG	5 cut(s)	57, 278, 298, 521, 522
BmsI	GCATC	1 cut(s)	283
BpiI	GAAGAC	2 cut(s)	256, 668
BpmI	CTGGAG	1 cut(s)	683
BpuEI	CTTGAG	2 cut(s)	392, 497
BpuMI	CCSGG	5 cut(s)	57, 278, 298, 521, 522
BsaAI	YACGTR	1 cut(s)	602
BsaJI	CCNNGG	6 cut(s)	9, 55, 327, 384, 520, 773
BsaWI	WCCGGW	2 cut(s)	541, 724
Bsc4I	CCNNNNNNNGG	6 cut(s)	56, 61, 62, 309, 750, 774
Bse118I	RCCGGY	2 cut(s)	340, 754
BseDI	CCNNGG	6 cut(s)	9, 55, 327, 384, 520, 773
BseGI	GGATG	2 cut(s)	143, 174
BseLI	CCNNNNNNNGG	6 cut(s)	56, 61, 62, 309, 750, 774
BseMII	CTCAG	2 cut(s)	182, 864
BseRI	GAGGAG	1 cut(s)	790
BseXI	GCAGC	3 cut(s)	27, 356, 817
BseYI	CCCAGC	1 cut(s)	50
BsgI	GTGCAG	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	542
BshFI	GGCC	6 cut(s)	240, 281, 326, 389, 436, 754
BshNI	GGYRCC	1 cut(s)	368
BsiEI	CGRYCG	1 cut(s)	542
BsiHKAI	GWGCWC	2 cut(s)	26, 90
BsiHKCI	CYCGRG	1 cut(s)	520
BsiSI	CCGG	9 cut(s)	57, 237, 278, 298, 341, 521, 542, 725, 755
BslFI	GGGAC	3 cut(s)	78, 564, 726
BslI	CCNNNNNNNGG	6 cut(s)	56, 61, 62, 309, 750, 774
BsmAI	GTCTC	1 cut(s)	427
BsmFI	GGGAC	3 cut(s)	78, 564, 726
BsnI	GGCC	6 cut(s)	240, 281, 326, 389, 436, 754
BsoBI	CYCGRG	1 cut(s)	520
Bsp1286I	GDGCHC	2 cut(s)	26, 90
Bsp143I	GATC	7 cut(s)	351, 358, 516, 658, 694, 711, 862
Bsp19I	CCATGG	2 cut(s)	9, 327
BspACI	CCGC	5 cut(s)	183, 252, 315, 372, 509
BspANI	GGCC	6 cut(s)	240, 281, 326, 389, 436, 754
BspCNI	CTCAG	2 cut(s)	181, 865
BspLI	GGNNCC	6 cut(s)	370, 437, 580, 696, 723, 742
BspPI	GGATC	4 cut(s)	511, 689, 702, 706
BspT107I	GGYRCC	1 cut(s)	368
BspTI	CTTAAG	1 cut(s)	716
BsrBI	CCGCTC	1 cut(s)	511
BsrFI	RCCGGY	2 cut(s)	340, 754
BssAI	RCCGGY	2 cut(s)	340, 754
BssECI	CCNNGG	6 cut(s)	9, 55, 327, 384, 520, 773
BssMI	GATC	7 cut(s)	351, 358, 516, 658, 694, 711, 862
BssSI	CACGAG	1 cut(s)	424
BssT1I	CCWWGG	2 cut(s)	9, 327
Bst2BI	CACGAG	1 cut(s)	424
Bst4CI	ACNGT	1 cut(s)	130
BstAFI	CTTAAG	1 cut(s)	716
BstBAI	YACGTR	1 cut(s)	602
BstC8I	GCNNGC	3 cut(s)	342, 530, 756
BstDEI	CTNAG	3 cut(s)	168, 873, 882
BstDSI	CCRYGG	3 cut(s)	9, 327, 384
BstF5I	GGATG	2 cut(s)	143, 174
BstKTI	GATC	7 cut(s)	354, 361, 519, 661, 697, 714, 865
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	7 cut(s)	351, 358, 516, 658, 694, 711, 862
BstMCI	CGRYCG	1 cut(s)	542
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 760, 802
BstNSI	RCATGY	2 cut(s)	406, 805
BstSCI	CCNGG	5 cut(s)	55, 276, 296, 519, 520
BstSNI	TACGTA	1 cut(s)	602
BstV1I	GCAGC	3 cut(s)	27, 356, 817
BstV2I	GAAGAC	2 cut(s)	256, 668
BstX2I	RGATCY	4 cut(s)	516, 658, 694, 711
BstYI	RGATCY	4 cut(s)	516, 658, 694, 711
BsuRI	GGCC	6 cut(s)	240, 281, 326, 389, 436, 754
BtgI	CCRYGG	3 cut(s)	9, 327, 384
BtgZI	GCGATG	1 cut(s)	88
BtrI	CACGTC	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	143, 174
Cac8I	GCNNGC	3 cut(s)	342, 530, 756
Cfr10I	RCCGGY	2 cut(s)	340, 754
Cfr13I	GGNCC	6 cut(s)	300, 312, 435, 578, 727, 740
Cfr9I	CCCGGG	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	47
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	3 cut(s)	168, 873, 882
DpnI	GATC	7 cut(s)	353, 360, 518, 660, 696, 713, 864
DpnII	GATC	7 cut(s)	351, 358, 516, 658, 694, 711, 862
EaeI	YGGCCR	4 cut(s)	238, 279, 324, 387
EciI	GGCGGA	2 cut(s)	172, 304
Ecl136II	GAGCTC	2 cut(s)	24, 88
Eco105I	TACGTA	1 cut(s)	602
Eco130I	CCWWGG	2 cut(s)	9, 327
Eco24I	GRGCYC	2 cut(s)	26, 90
Eco47I	GGWCC	5 cut(s)	300, 312, 578, 727, 740
Eco53kI	GAGCTC	2 cut(s)	24, 88
Eco88I	CYCGRG	1 cut(s)	520
EcoICRI	GAGCTC	2 cut(s)	24, 88
EcoO109I	RGGNCCY	1 cut(s)	578
EcoT14I	CCWWGG	2 cut(s)	9, 327
EcoT38I	GRGCYC	2 cut(s)	26, 90
ErhI	CCWWGG	2 cut(s)	9, 327
FaqI	GGGAC	3 cut(s)	78, 564, 726
FbaI	TGATCA	1 cut(s)	862
Fnu4HI	GCNGC	4 cut(s)	41, 252, 345, 806
FokI	GGATG	2 cut(s)	130, 161
FriOI	GRGCYC	2 cut(s)	26, 90
Fsp4HI	GCNGC	4 cut(s)	41, 252, 345, 806
FspBI	CTAG	3 cut(s)	44, 227, 467
GluI	GCNGC	4 cut(s)	41, 252, 345, 806
GsaI	CCCAGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	683
HaeIII	GGCC	6 cut(s)	240, 281, 326, 389, 436, 754
HapII	CCGG	9 cut(s)	57, 237, 278, 298, 341, 521, 542, 725, 755
HincII	GTYRAC	2 cut(s)	247, 646
HindII	GTYRAC	2 cut(s)	247, 646
HinfI	GANTC	3 cut(s)	420, 590, 665
HpaI	GTTAAC	1 cut(s)	646
HpaII	CCGG	9 cut(s)	57, 237, 278, 298, 341, 521, 542, 725, 755
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	247, 646
Hpy188I	TCNGA	1 cut(s)	774
Hpy188III	TCNNGA	5 cut(s)	467, 514, 581, 662, 698
Hpy8I	GTNNAC	2 cut(s)	247, 646
Hpy99I	CGWCG	2 cut(s)	137, 359
HpyAV	CCTTC	2 cut(s)	476, 604
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	233, 601
HpyCH4V	TGCA	3 cut(s)	161, 528, 805
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 760, 802
HpyF3I	CTNAG	3 cut(s)	168, 873, 882
HpySE526I	ACGT	2 cut(s)	233, 601
KroI	GCCGGC	2 cut(s)	340, 754
KroNI	GCCGGC	2 cut(s)	342, 756
Ksp22I	TGATCA	1 cut(s)	862
KspAI	GTTAAC	1 cut(s)	646
Kzo9I	GATC	7 cut(s)	351, 358, 516, 658, 694, 711, 862
LmnI	GCTCC	4 cut(s)	85, 279, 463, 777
Lsp1109I	GCAGC	3 cut(s)	27, 356, 817
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	3 cut(s)	44, 227, 467
MaeII	ACGT	2 cut(s)	233, 601
MalI	GATC	7 cut(s)	353, 360, 518, 660, 696, 713, 864
MbiI	CCGCTC	1 cut(s)	511
MboI	GATC	7 cut(s)	351, 358, 516, 658, 694, 711, 862
MboII	GAAGA	5 cut(s)	256, 371, 557, 668, 668
MflI	RGATCY	4 cut(s)	516, 658, 694, 711
MhlI	GDGCHC	2 cut(s)	26, 90
MluCI	AATT	2 cut(s)	115, 867
MlyI	GAGTC	3 cut(s)	429, 599, 674
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	8 cut(s)	7, 110, 313, 469, 685, 768, 775, 826
MroNI	GCCGGC	2 cut(s)	340, 754
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	3 cut(s)	555, 645, 717
MspA1I	CMGCKG	2 cut(s)	254, 374
MspCI	CTTAAG	1 cut(s)	716
MspI	CCGG	9 cut(s)	57, 237, 278, 298, 341, 521, 542, 725, 755
MspR9I	CCNGG	5 cut(s)	57, 278, 298, 521, 522
MwoI	GCNNNNNNNGC	3 cut(s)	323, 760, 802
NaeI	GCCGGC	2 cut(s)	342, 756
NciI	CCSGG	5 cut(s)	57, 278, 298, 521, 522
NcoI	CCATGG	2 cut(s)	9, 327
NdeII	GATC	7 cut(s)	351, 358, 516, 658, 694, 711, 862
NgoMIV	GCCGGC	2 cut(s)	340, 754
NlaIV	GGNNCC	6 cut(s)	370, 437, 580, 696, 723, 742
NmeAIII	GCCGAG	2 cut(s)	302, 646
NspI	RCATGY	2 cut(s)	406, 805
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PdiI	GCCGGC	2 cut(s)	342, 756
PdmI	GAANNNNTTC	1 cut(s)	200
PkrI	GCNGC	4 cut(s)	42, 253, 346, 807
PleI	GAGTC	3 cut(s)	428, 598, 673
PpsI	GAGTC	3 cut(s)	428, 598, 673
Ppu21I	YACGTR	1 cut(s)	602
PpuMI	RGGWCCY	1 cut(s)	578
Psp124BI	GAGCTC	2 cut(s)	26, 90
Psp5II	RGGWCCY	1 cut(s)	578
PspFI	CCCAGC	1 cut(s)	50
PspN4I	GGNNCC	6 cut(s)	370, 437, 580, 696, 723, 742
PspPI	GGNCC	6 cut(s)	300, 312, 435, 578, 727, 740
PspPPI	RGGWCCY	1 cut(s)	578
PsuI	RGATCY	4 cut(s)	516, 658, 694, 711
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SacI	GAGCTC	2 cut(s)	26, 90
SaqAI	TTAA	3 cut(s)	555, 645, 717
SatI	GCNGC	4 cut(s)	41, 252, 345, 806
Sau3AI	GATC	7 cut(s)	351, 358, 516, 658, 694, 711, 862
Sau96I	GGNCC	6 cut(s)	300, 312, 435, 578, 727, 740
SchI	GAGTC	3 cut(s)	429, 599, 674
ScrFI	CCNGG	5 cut(s)	57, 278, 298, 521, 522
SduI	GDGCHC	2 cut(s)	26, 90
SfaNI	GCATC	1 cut(s)	283
SinI	GGWCC	5 cut(s)	300, 312, 578, 727, 740
SmaI	CCCGGG	1 cut(s)	522
SmlI	CTYRAG	3 cut(s)	407, 512, 716
SmoI	CTYRAG	3 cut(s)	407, 512, 716
SnaBI	TACGTA	1 cut(s)	602
Sse9I	AATT	2 cut(s)	115, 867
SsiI	CCGC	5 cut(s)	183, 252, 315, 372, 509
SspMI	CTAG	3 cut(s)	44, 227, 467
SstI	GAGCTC	2 cut(s)	26, 90
StyD4I	CCNGG	5 cut(s)	55, 276, 296, 519, 520
StyI	CCWWGG	2 cut(s)	9, 327
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	2 cut(s)	236, 604
TaqI	TCGA	5 cut(s)	204, 357, 538, 668, 679
TaqII	GACCGA	1 cut(s)	728
TasI	AATT	2 cut(s)	115, 867
TauI	GCSGC	1 cut(s)	254
Tru1I	TTAA	3 cut(s)	555, 645, 717
Tru9I	TTAA	3 cut(s)	555, 645, 717
TseI	GCWGC	3 cut(s)	40, 344, 805
TspDTI	ATGAA	3 cut(s)	132, 581, 586
TspMI	CCCGGG	1 cut(s)	520
Vha464I	CTTAAG	1 cut(s)	716
VpaK11BI	GGWCC	5 cut(s)	300, 312, 578, 727, 740
XbaI	TCTAGA	1 cut(s)	466
XceI	RCATGY	2 cut(s)	406, 805
XcmI	CCANNNNNNNNNTGG	2 cut(s)	58, 325
XmaI	CCCGGG	1 cut(s)	520
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	3 cut(s)	44, 227, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.