Rroxscaffold_4G00322380

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003264
Physical Location & Seq
Forward (+)
52608833 .. 52609689
857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00322380.1

Sequence Viewer

Length: 798 bp
ATGCTTGATGCCCGGTCCTCTCTCCGGTCCGTCATCTCGACCATGGACTTCAAGCCGGCAGCCATGATCGTCGATCTTTTCGGCACCGCTGTTCTTCCCGTGGCTGATCAGTTCCACATGCTCAAGTATGTAAGAGTCTCGTGTGCTTGGCCCCTTGCCCTGCTTTTATACGCTCCTATTCTAGATAAGGAGGTGGAAGGAGAATACTTGGATCAAAAAGAACCGCTCAAGATCCCGGGTTGCAAGCCTGTTCGACCGGAAGATGTTGTTAAGCCCATGATGAACAGAAAAGATCCCGAATACGAGTCCTTTATACGTATTGGGGTAGAGATAGCCGAGATGAGTGATGGGATTTTGGTTAACACTTGGGAAGATCTGGAGTCGATGAGTCTTAGACCCATGAGAGAGGATCCAGAGGAGCTCCACTCCGAGGAGCGAGGTGTTGGGTTGGCTGGACATGCAGCCCAATGCCTCTTGATTTACATTTCTTTTGGGAGTGGCGGGGTTCTGTCGGCTGACGCTGATCAAATTACCGAGATGGCCTGGGGTATAGAGCTTAGCGCTCAGAGATTTATATGGGTAGTGCATCCACCAAGCAAAGATGGTGACGAAGGCAATGACATTTCAGACTACTTGCCTGAATGGTTCATGGCTCGGACTCGTGACAAGGGTCTAGTGGTCACCACTTGGGCTCCTCAGGTGGAAATCTTGGCTCATTCATCAGTCGGAGGGTTCTTGTCACACTGTGGTTGGAACTCGTCGCTGGAGAGTATACTGAATGGTGTGCAGCGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

265

Amino Acids

29.54

Weight (kDa)

4.7

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 160 - 262 7e-10 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccBSI CCGCTC 1 cut(s) 226
AccI GTMKAC 1 cut(s) 772
AciI CCGC 3 cut(s) 87, 224, 501
AclWI GGATC 5 cut(s) 219, 226, 287, 404, 417
AdeI CACNNNGTG 1 cut(s) 746
AfeI AGCGCT 1 cut(s) 562
AfiI CCNNNNNNNGG 2 cut(s) 24, 430
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 542
AluBI AGCT 2 cut(s) 421, 556
AluI AGCT 2 cut(s) 421, 556
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 5 cut(s) 219, 226, 287, 404, 417
Ama87I CYCGRG 1 cut(s) 235
Aor51HI AGCGCT 1 cut(s) 562
AoxI GGCC 2 cut(s) 149, 540
ApeKI GCWGC 3 cut(s) 59, 461, 787
AspLEI GCGC 2 cut(s) 563, 792
AspS9I GGNCC 3 cut(s) 15, 27, 150
AsuC2I CCSGG 3 cut(s) 13, 236, 237
AsuHPI GGTGA 2 cut(s) 617, 673
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 2 cut(s) 15, 27
AxyI CCTNAGG 1 cut(s) 696
BamHI GGATCC 1 cut(s) 409
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 2 cut(s) 423, 694
BauI CACGAG 2 cut(s) 139, 660
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 2 cut(s) 71, 473
BccI CCATC 3 cut(s) 341, 532, 596
BciT130I CCWGG 1 cut(s) 544
BclI TGATCA 2 cut(s) 106, 523
BcnI CCSGG 3 cut(s) 13, 236, 237
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 2 cut(s) 182, 674
BfoI RGCGCY 2 cut(s) 564, 793
BglII AGATCT 1 cut(s) 373
BisI GCNGC 3 cut(s) 60, 462, 788
BlpI GCTNAGC 1 cut(s) 557
BlsI GCNGC 3 cut(s) 61, 463, 789
Bme1390I CCNGG 4 cut(s) 13, 236, 237, 544
Bme18I GGWCC 2 cut(s) 15, 27
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 3 cut(s) 15, 27, 150
BmiI GGNNCC 4 cut(s) 85, 152, 411, 693
BmrFI CCNGG 4 cut(s) 13, 236, 237, 544
BmsI GCATC 1 cut(s) 595
BoxI GACNNNNGTC 1 cut(s) 669
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BpmI CTGGAG 2 cut(s) 398, 785
Bpu1102I GCTNAGC 1 cut(s) 557
BpuEI CTTGAG 2 cut(s) 107, 212
BpuMI CCSGG 3 cut(s) 13, 236, 237
BsaAI YACGTR 1 cut(s) 317
BsaJI CCNNGG 5 cut(s) 42, 99, 235, 429, 543
BsaWI WCCGGW 2 cut(s) 24, 256
BsaXI ACNNNNNCTCC 2 cut(s) 676, 706
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 430
Bse118I RCCGGY 1 cut(s) 55
Bse21I CCTNAGG 1 cut(s) 696
Bse3DI GCAATG 1 cut(s) 622
BseBI CCWGG 1 cut(s) 544
BseDI CCNNGG 5 cut(s) 42, 99, 235, 429, 543
BseGI GGATG 1 cut(s) 586
BseLI CCNNNNNNNGG 2 cut(s) 24, 430
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 2 cut(s) 578, 710
BseRI GAGGAG 3 cut(s) 431, 446, 684
BseXI GCAGC 2 cut(s) 71, 473
Bsh1285I CGRYCG 1 cut(s) 257
BshFI GGCC 2 cut(s) 151, 542
BshNI GGYRCC 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 423
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 5 cut(s) 13, 25, 56, 236, 257
BslI CCNNNNNNNGG 2 cut(s) 24, 430
BsmAI GTCTC 1 cut(s) 142
BsnI GGCC 2 cut(s) 151, 542
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 423, 694
Bsp143I GATC 9 cut(s) 66, 73, 106, 211, 231, 292, 373, 409, 523
Bsp1720I GCTNAGC 1 cut(s) 557
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 3 cut(s) 87, 224, 501
BspANI GGCC 2 cut(s) 151, 542
BspCNI CTCAG 2 cut(s) 577, 709
BspLI GGNNCC 4 cut(s) 85, 152, 411, 693
BspPI GGATC 5 cut(s) 219, 226, 287, 404, 417
BspT107I GGYRCC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 622
BsrFI RCCGGY 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 5 cut(s) 42, 99, 235, 429, 543
BssMI GATC 9 cut(s) 66, 73, 106, 211, 231, 292, 373, 409, 523
BssNAI GTATAC 1 cut(s) 773
BssSI CACGAG 2 cut(s) 139, 660
BssT1I CCWWGG 1 cut(s) 42
Bst1107I GTATAC 1 cut(s) 773
Bst2BI CACGAG 2 cut(s) 139, 660
Bst2UI CCWGG 1 cut(s) 544
Bst4CI ACNGT 1 cut(s) 746
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 57, 245
BstDEI CTNAG 4 cut(s) 392, 557, 564, 696
BstDSI CCRYGG 2 cut(s) 42, 99
BstEII GGTNACC 1 cut(s) 679
BstF5I GGATG 1 cut(s) 586
BstH2I RGCGCY 2 cut(s) 564, 793
BstHHI GCGC 2 cut(s) 563, 792
BstKTI GATC 9 cut(s) 69, 76, 109, 214, 234, 295, 376, 412, 526
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 9 cut(s) 66, 73, 106, 211, 231, 292, 373, 409, 523
BstMCI CGRYCG 1 cut(s) 257
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstNI CCWGG 1 cut(s) 544
BstNSI RCATGY 2 cut(s) 121, 461
BstPAI GACNNNNGTC 1 cut(s) 669
BstPI GGTNACC 1 cut(s) 679
BstSCI CCNGG 4 cut(s) 11, 234, 235, 542
BstSNI TACGTA 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 71, 473
BstX2I RGATCY 4 cut(s) 231, 292, 373, 409
BstYI RGATCY 4 cut(s) 231, 292, 373, 409
BstZ17I GTATAC 1 cut(s) 773
Bsu36I CCTNAGG 1 cut(s) 696
BsuRI GGCC 2 cut(s) 151, 542
BtgI CCRYGG 2 cut(s) 42, 99
BtsCI GGATG 1 cut(s) 586
BtsIMutI CAGTG 1 cut(s) 742
Cac8I GCNNGC 2 cut(s) 57, 245
CfoI GCGC 2 cut(s) 563, 792
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 3 cut(s) 15, 27, 150
Cfr9I CCCGGG 1 cut(s) 235
CpoI CGGWCCG 1 cut(s) 27
CseI GACGC 1 cut(s) 527
CspI CGGWCCG 1 cut(s) 27
CviAII CATG 7 cut(s) 43, 64, 118, 277, 400, 458, 649
DdeI CTNAG 4 cut(s) 392, 557, 564, 696
DpnI GATC 9 cut(s) 68, 75, 108, 213, 233, 294, 375, 411, 525
DpnII GATC 9 cut(s) 66, 73, 106, 211, 231, 292, 373, 409, 523
DraIII CACNNNGTG 1 cut(s) 746
Ecl136II GAGCTC 1 cut(s) 421
Eco105I TACGTA 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 42
Eco24I GRGCYC 2 cut(s) 423, 694
Eco47I GGWCC 2 cut(s) 15, 27
Eco47III AGCGCT 1 cut(s) 562
Eco53kI GAGCTC 1 cut(s) 421
Eco81I CCTNAGG 1 cut(s) 696
Eco88I CYCGRG 1 cut(s) 235
Eco91I GGTNACC 1 cut(s) 679
EcoICRI GAGCTC 1 cut(s) 421
EcoO65I GGTNACC 1 cut(s) 679
EcoRII CCWGG 1 cut(s) 542
EcoT14I CCWWGG 1 cut(s) 42
EcoT38I GRGCYC 2 cut(s) 423, 694
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 7 cut(s) 46, 67, 121, 280, 403, 461, 652
FatI CATG 7 cut(s) 42, 63, 117, 276, 399, 457, 648
FauI CCCGC 1 cut(s) 494
FbaI TGATCA 2 cut(s) 106, 523
FblI GTMKAC 1 cut(s) 772
Fnu4HI GCNGC 3 cut(s) 60, 462, 788
FokI GGATG 1 cut(s) 573
FriOI GRGCYC 2 cut(s) 423, 694
Fsp4HI GCNGC 3 cut(s) 60, 462, 788
FspBI CTAG 2 cut(s) 182, 674
GlaI GCGC 2 cut(s) 562, 791
GluI GCNGC 3 cut(s) 60, 462, 788
GsuI CTGGAG 2 cut(s) 398, 785
HaeII RGCGCY 2 cut(s) 564, 793
HaeIII GGCC 2 cut(s) 151, 542
HapII CCGG 5 cut(s) 13, 25, 56, 236, 257
HgaI GACGC 1 cut(s) 527
HhaI GCGC 2 cut(s) 563, 792
Hin1II CATG 7 cut(s) 46, 67, 121, 280, 403, 461, 652
Hin6I GCGC 2 cut(s) 561, 790
HinP1I GCGC 2 cut(s) 561, 790
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 5 cut(s) 135, 305, 380, 388, 658
HpaI GTTAAC 1 cut(s) 361
HpaII CCGG 5 cut(s) 13, 25, 56, 236, 257
HphI GGTGA 2 cut(s) 617, 673
Hpy166II GTNNAC 2 cut(s) 361, 773
Hpy188I TCNGA 5 cut(s) 430, 567, 628, 657, 728
Hpy188III TCNNGA 8 cut(s) 37, 182, 229, 296, 377, 413, 475, 662
Hpy8I GTNNAC 2 cut(s) 361, 773
Hpy99I CGWCG 2 cut(s) 74, 763
HpyAV CCTTC 2 cut(s) 191, 605
HpyCH4III ACNGT 1 cut(s) 746
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 4 cut(s) 243, 461, 586, 787
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 4 cut(s) 392, 557, 564, 696
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 7 cut(s) 46, 67, 121, 280, 403, 461, 652
HspAI GCGC 2 cut(s) 561, 790
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Ksp22I TGATCA 2 cut(s) 106, 523
KspAI GTTAAC 1 cut(s) 361
Kzo9I GATC 9 cut(s) 66, 73, 106, 211, 231, 292, 373, 409, 523
LmnI GCTCC 5 cut(s) 178, 418, 426, 433, 697
Lsp1109I GCAGC 2 cut(s) 71, 473
LweI GCATC 1 cut(s) 595
MaeI CTAG 2 cut(s) 182, 674
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 4 cut(s) 605, 662, 679, 738
MalI GATC 9 cut(s) 68, 75, 108, 213, 233, 294, 375, 411, 525
MbiI CCGCTC 1 cut(s) 226
MboI GATC 9 cut(s) 66, 73, 106, 211, 231, 292, 373, 409, 523
MboII GAAGA 3 cut(s) 86, 272, 383
MflI RGATCY 4 cut(s) 231, 292, 373, 409
MhlI GDGCHC 2 cut(s) 423, 694
MluCI AATT 1 cut(s) 528
MlyI GAGTC 5 cut(s) 144, 314, 389, 397, 652
MmeI TCCRAC 2 cut(s) 706, 731
MnlI CCTC 9 cut(s) 28, 184, 400, 409, 424, 431, 482, 705, 722
MroNI GCCGGC 1 cut(s) 55
MseI TTAA 2 cut(s) 270, 360
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 5 cut(s) 13, 25, 56, 236, 257
MspR9I CCNGG 4 cut(s) 13, 236, 237, 544
MvaI CCWGG 1 cut(s) 544
MwoI GCNNNNNNNGC 1 cut(s) 458
NaeI GCCGGC 1 cut(s) 57
NciI CCSGG 3 cut(s) 13, 236, 237
NcoI CCATGG 1 cut(s) 42
NdeII GATC 9 cut(s) 66, 73, 106, 211, 231, 292, 373, 409, 523
NgoMIV GCCGGC 1 cut(s) 55
NlaIII CATG 7 cut(s) 46, 67, 121, 280, 403, 461, 652
NlaIV GGNNCC 4 cut(s) 85, 152, 411, 693
NmeAIII GCCGAG 1 cut(s) 361
NmuCI GTSAC 4 cut(s) 605, 662, 679, 738
NspI RCATGY 2 cut(s) 121, 461
PdiI GCCGGC 1 cut(s) 57
PkrI GCNGC 3 cut(s) 61, 463, 789
PleI GAGTC 5 cut(s) 143, 313, 388, 396, 652
PpsI GAGTC 5 cut(s) 143, 313, 388, 396, 652
Ppu21I YACGTR 1 cut(s) 317
PshAI GACNNNNGTC 1 cut(s) 669
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 542
PspEI GGTNACC 1 cut(s) 679
PspGI CCWGG 1 cut(s) 542
PspN4I GGNNCC 4 cut(s) 85, 152, 411, 693
PspPI GGNCC 3 cut(s) 15, 27, 150
PsuI RGATCY 4 cut(s) 231, 292, 373, 409
Rsr2I CGGWCCG 1 cut(s) 27
RsrII CGGWCCG 1 cut(s) 27
SacI GAGCTC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 270, 360
SatI GCNGC 3 cut(s) 60, 462, 788
Sau3AI GATC 9 cut(s) 66, 73, 106, 211, 231, 292, 373, 409, 523
Sau96I GGNCC 3 cut(s) 15, 27, 150
SchI GAGTC 5 cut(s) 144, 314, 389, 397, 652
ScrFI CCNGG 4 cut(s) 13, 236, 237, 544
SduI GDGCHC 2 cut(s) 423, 694
SetI ASST 6 cut(s) 195, 319, 423, 442, 558, 702
SfaNI GCATC 1 cut(s) 595
SinI GGWCC 2 cut(s) 15, 27
SmaI CCCGGG 1 cut(s) 237
SmlI CTYRAG 2 cut(s) 122, 227
SmoI CTYRAG 2 cut(s) 122, 227
SnaBI TACGTA 1 cut(s) 317
Sse9I AATT 1 cut(s) 528
SsiI CCGC 3 cut(s) 87, 224, 501
SspMI CTAG 2 cut(s) 182, 674
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 4 cut(s) 11, 234, 235, 542
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 746
TaiI ACGT 1 cut(s) 319
TaqI TCGA 4 cut(s) 38, 72, 253, 383
TasI AATT 1 cut(s) 528
Tru1I TTAA 2 cut(s) 270, 360
Tru9I TTAA 2 cut(s) 270, 360
TscAI CASTG 1 cut(s) 749
TseFI GTSAC 4 cut(s) 605, 662, 679, 738
TseI GCWGC 3 cut(s) 59, 461, 787
Tsp45I GTSAC 4 cut(s) 605, 662, 679, 738
TspDTI ATGAA 3 cut(s) 296, 637, 708
TspGWI ACGGA 1 cut(s) 19
TspMI CCCGGG 1 cut(s) 235
TspRI CASTG 1 cut(s) 749
VpaK11BI GGWCC 2 cut(s) 15, 27
XbaI TCTAGA 1 cut(s) 181
XceI RCATGY 2 cut(s) 121, 461
XmaI CCCGGG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 772
XspI CTAG 2 cut(s) 182, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.