RchiOBHm_Chr5g0049051

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003264
Physical Location & Seq
Reverse (-)
46480182 .. 46482172
1991 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32673

Sequence Viewer

Length: 1446 bp
ATGGCGGAGATGAGCTCAAAACCACATGTGTTGCTAGTCCCAAGCCCCGGCATGGGCCACCTCATCCCCTTAATGGAGGTCGCCAGCTCCCTGGTCACCCACCACAACTGCCATGCCACACTCGTCGTCGTTTCATCCAACACCTCTCCGGCACAATCCCAACTCATCCGATCGGCCAAGACCCAGAAGCTCTACGACATAGTTGAGCTCCCAGCACCCTCCGGCCACGACTCCAACGCCGCCGGTTCAGTCTTCACGCACCTCTCCGCCATCATGCTCGATGCCCGATCATCTCTCCGGTCTGCAATCTCGGCCATGGAGCTCAGACCCGCCGCCATGATCGTCGATCTTTTCAGCACTGCAGTCCTCACTGTTGCACAAGAATTCCACATGCTCAAGTACGTAACTCTAGTCTCCTGTGCCTGGCCACTAACGTTGCTTCTATATGCGCCAATTCTAGATAAACAGATAGATGGAGAGTATTTGGATCGCAAAGAGCTGCTGGAGATCCCGGGTTGCAAGCCGGTTCGACCTGAAGATGTGGTGAAGCCGATGATGAATAGGAAGGATCGTGAATACGAGTCCTTCTTAAGAATTGGGAAGGAGATTACTTCAATGAGTGATGGCATCTTGATCAACACATGGGAGGATCTGGAGCCCAACTGCCTTAAGGCTATGAGAGAGCACCCGGAGTGGAAGAAGATTGTTAGGGTTCCGCTGTACACTATCGGTCCCATGGTTAGACTGGCAGGGCAGTCCGGTGGTGGTCCGAGGAGTGAGCTGTTGGATTGGCTGGATAAGCAACCTAGTGAGTCTGTGCTTTACATATCGTTTGGGAGCGGTGGGGTTCTTTCGGCTGAACAGATCACAGAGATGGCTTGGGGTTTAGAGCTTAGTAAGCAGAGGTTTATATGGGTGGTGCAGCCACCAAGCAAAGGAGGTGCTGAAGGCAATGACATTTCGGAGTATTTGCCTGAGGGGTTCATGGCTCGGACTCAGGAAATGGGTGTGGTGGTCACCACTTGGGCTCCTCAGTCGGAAATCTTGGCTCATTCGTCAGTGGGAGGGTTTCTCTCGCACTGCGGTTGGAACTCGGCGCTGGAGAGTATACTGAATGGTGTGCCAATGATCGCATGGCCGCTATATGCAGAGCAGAAAATGGTTGCTACGCTGCTGGTGGAGGAGCTCAAGGTGGCAATTCGACCTAAAGTTTTGCCAACAAAAGCAGTAGCAGGGAGGGAGGAGATTGAGATGTTGGTGAGGAAGATTATGGAGCAGAAAGAAGGAGATGCAATGAGGGCAAGAGCTAAAGAACTGAAAGCAAGTGGGGAAGAAGCTCTGAGTGTGGGCGGGTCTTCTTTCAATATGCTGTCTGAATTGTCAAGGCTATGCAAGATCAATACCGAACAGCAATGCCAGAAAATTGACACTGAAAAACTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

481

Amino Acids

53.0

Weight (kDa)

5.68

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 270 - 391 2.2e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 840
AccI GTMKAC 1 cut(s) 1108
AclI AACGTT 1 cut(s) 434
AclWI GGATC 4 cut(s) 495, 502, 576, 657
AcoI YGGCCR 5 cut(s) 174, 223, 312, 425, 1136
AcsI RAATTY 1 cut(s) 383
AcuI CTGAAG 2 cut(s) 555, 966
AfaI GTAC 2 cut(s) 401, 722
AfiI CCNNNNNNNGG 6 cut(s) 47, 52, 53, 73, 423, 935
AflII CTTAAG 2 cut(s) 589, 668
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 2 cut(s) 615, 1363
AjnI CCWGG 2 cut(s) 90, 422
Alw21I GWGCWC 5 cut(s) 17, 210, 324, 687, 1188
Alw26I GTCTC 1 cut(s) 418
AlwI GGATC 4 cut(s) 495, 502, 576, 657
Ama87I CYCGRG 1 cut(s) 511
AoxI GGCC 6 cut(s) 55, 174, 223, 312, 425, 1136
ApeKI GCWGC 3 cut(s) 499, 922, 1171
ApoI RAATTY 1 cut(s) 383
AspLEI GCGC 2 cut(s) 451, 1099
AspS9I GGNCC 3 cut(s) 55, 731, 767
AsuC2I CCSGG 4 cut(s) 48, 512, 513, 689
AsuHPI GGTGA 4 cut(s) 88, 556, 1009, 1270
AvaI CYCGRG 1 cut(s) 511
AvaII GGWCC 2 cut(s) 731, 767
AxyI CCTNAGG 1 cut(s) 975
BalI TGGCCA 1 cut(s) 427
BanII GRGCYC 6 cut(s) 17, 210, 324, 660, 1030, 1188
BbsI GAAGAC 2 cut(s) 244, 1347
Bbv12I GWGCWC 5 cut(s) 17, 210, 324, 687, 1188
BbvI GCAGC 3 cut(s) 486, 934, 1158
BccI CCATC 4 cut(s) 278, 467, 617, 868
BciT130I CCWGG 2 cut(s) 92, 424
BclI TGATCA 1 cut(s) 633
BcnI CCSGG 4 cut(s) 48, 512, 513, 689
BcoDI GTCTC 1 cut(s) 418
BfaI CTAG 4 cut(s) 35, 410, 458, 807
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 1100
BfrI CTTAAG 2 cut(s) 589, 668
BisI GCNGC 6 cut(s) 240, 333, 500, 923, 1139, 1172
BlsI GCNGC 6 cut(s) 241, 334, 501, 924, 1140, 1173
Bme1390I CCNGG 6 cut(s) 48, 92, 424, 512, 513, 689
Bme18I GGWCC 2 cut(s) 731, 767
BmeT110I CYCGRG 1 cut(s) 511
BmgT120I GGNCC 3 cut(s) 55, 731, 767
BmiI GGNNCC 4 cut(s) 657, 714, 733, 1029
BmrFI CCNGG 6 cut(s) 48, 92, 424, 512, 513, 689
BmsI GCATC 3 cut(s) 271, 636, 1279
BpiI GAAGAC 2 cut(s) 244, 1347
BplI GAGNNNNNCTC 3 cut(s) 31, 1056, 1088
BpmI CTGGAG 3 cut(s) 524, 674, 1121
BpuEI CTTGAG 2 cut(s) 380, 1172
BpuMI CCSGG 4 cut(s) 48, 512, 513, 689
BsaAI YACGTR 1 cut(s) 403
BsaJI CCNNGG 6 cut(s) 46, 90, 315, 511, 735, 770
BsaWI WCCGGW 2 cut(s) 297, 758
BsaXI ACNNNNNCTCC 2 cut(s) 1012, 1042
Bsc4I CCNNNNNNNGG 6 cut(s) 47, 52, 53, 73, 423, 935
Bse118I RCCGGY 2 cut(s) 242, 523
Bse1I ACTGG 2 cut(s) 750, 1443
Bse21I CCTNAGG 1 cut(s) 975
Bse3DI GCAATG 3 cut(s) 958, 1299, 1418
BseBI CCWGG 2 cut(s) 92, 424
BseDI CCNNGG 6 cut(s) 46, 90, 315, 511, 735, 770
BseGI GGATG 3 cut(s) 63, 134, 165
BseLI CCNNNNNNNGG 6 cut(s) 47, 52, 53, 73, 423, 935
BseMI GCAATG 3 cut(s) 958, 1299, 1418
BseMII CTCAG 5 cut(s) 337, 966, 1010, 1046, 1331
BseNI ACTGG 2 cut(s) 750, 1443
BseRI GAGGAG 4 cut(s) 787, 1020, 1196, 1256
BseXI GCAGC 3 cut(s) 486, 934, 1158
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 941
Bsh1285I CGRYCG 1 cut(s) 173
BshFI GGCC 6 cut(s) 57, 176, 225, 314, 427, 1138
BsiEI CGRYCG 1 cut(s) 173
BsiHKAI GWGCWC 5 cut(s) 17, 210, 324, 687, 1188
BsiHKCI CYCGRG 1 cut(s) 511
BsiSI CCGG 9 cut(s) 48, 149, 222, 243, 298, 512, 524, 689, 759
BslFI GGGAC 2 cut(s) 23, 717
BslI CCNNNNNNNGG 6 cut(s) 47, 52, 53, 73, 423, 935
BsmAI GTCTC 1 cut(s) 418
BsmFI GGGAC 2 cut(s) 23, 717
BsnI GGCC 6 cut(s) 57, 176, 225, 314, 427, 1138
BsoBI CYCGRG 1 cut(s) 511
Bsp1286I GDGCHC 7 cut(s) 17, 210, 324, 660, 687, 1030, 1188
Bsp1407I TGTACA 1 cut(s) 720
Bsp19I CCATGG 2 cut(s) 315, 735
BspANI GGCC 6 cut(s) 57, 176, 225, 314, 427, 1138
BspCNI CTCAG 5 cut(s) 336, 967, 1009, 1045, 1332
BspLI GGNNCC 4 cut(s) 657, 714, 733, 1029
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 4 cut(s) 495, 502, 576, 657
BspTI CTTAAG 2 cut(s) 589, 668
BsrBI CCGCTC 1 cut(s) 840
BsrDI GCAATG 3 cut(s) 958, 1299, 1418
BsrFI RCCGGY 2 cut(s) 242, 523
BsrGI TGTACA 1 cut(s) 720
BsrI ACTGG 2 cut(s) 750, 1443
BssAI RCCGGY 2 cut(s) 242, 523
BssECI CCNNGG 6 cut(s) 46, 90, 315, 511, 735, 770
BssNAI GTATAC 1 cut(s) 1109
BssT1I CCWWGG 2 cut(s) 315, 735
Bst1107I GTATAC 1 cut(s) 1109
Bst2UI CCWGG 2 cut(s) 92, 424
Bst4CI ACNGT 1 cut(s) 373
BstAFI CTTAAG 2 cut(s) 589, 668
BstAUI TGTACA 1 cut(s) 720
BstBAI YACGTR 1 cut(s) 403
BstC8I GCNNGC 2 cut(s) 85, 521
BstDEI CTNAG 6 cut(s) 323, 893, 975, 996, 1032, 1340
BstDSI CCRYGG 2 cut(s) 315, 735
BstEII GGTNACC 2 cut(s) 94, 1015
BstF5I GGATG 3 cut(s) 63, 134, 165
BstH2I RGCGCY 1 cut(s) 1100
BstHHI GCGC 2 cut(s) 451, 1099
BstMAI GTCTC 1 cut(s) 418
BstMCI CGRYCG 1 cut(s) 173
BstMWI GCNNNNNNNGC 4 cut(s) 311, 799, 898, 1298
BstNI CCWGG 2 cut(s) 92, 424
BstNSI RCATGY 2 cut(s) 29, 394
BstPI GGTNACC 2 cut(s) 94, 1015
BstSCI CCNGG 6 cut(s) 46, 90, 422, 510, 511, 687
BstSFI CTRYAG 1 cut(s) 360
BstSNI TACGTA 1 cut(s) 403
BstV1I GCAGC 3 cut(s) 486, 934, 1158
BstV2I GAAGAC 2 cut(s) 244, 1347
BstX2I RGATCY 2 cut(s) 507, 649
BstXI CCANNNNNNTGG 1 cut(s) 91
BstYI RGATCY 2 cut(s) 507, 649
BstZ17I GTATAC 1 cut(s) 1109
Bsu36I CCTNAGG 1 cut(s) 975
BsuRI GGCC 6 cut(s) 57, 176, 225, 314, 427, 1138
BtgI CCRYGG 2 cut(s) 315, 735
BtsCI GGATG 3 cut(s) 63, 134, 165
BtsI GCAGTG 2 cut(s) 357, 1078
BtsIMutI CAGTG 5 cut(s) 357, 369, 1065, 1078, 1428
Cac8I GCNNGC 2 cut(s) 85, 521
CfoI GCGC 2 cut(s) 451, 1099
Cfr10I RCCGGY 2 cut(s) 242, 523
Cfr13I GGNCC 3 cut(s) 55, 731, 767
Cfr9I CCCGGG 1 cut(s) 511
Csp6I GTAC 2 cut(s) 400, 721
CspCI CAANNNNNGTGG 4 cut(s) 12, 47, 417, 452
CviQI GTAC 2 cut(s) 400, 721
DdeI CTNAG 6 cut(s) 323, 893, 975, 996, 1032, 1340
EaeI YGGCCR 5 cut(s) 174, 223, 312, 425, 1136
EciI GGCGGA 2 cut(s) 20, 256
Ecl136II GAGCTC 4 cut(s) 15, 208, 322, 1186
Eco105I TACGTA 1 cut(s) 403
Eco130I CCWWGG 2 cut(s) 315, 735
Eco24I GRGCYC 6 cut(s) 17, 210, 324, 660, 1030, 1188
Eco47I GGWCC 2 cut(s) 731, 767
Eco53kI GAGCTC 4 cut(s) 15, 208, 322, 1186
Eco57I CTGAAG 2 cut(s) 555, 966
Eco81I CCTNAGG 1 cut(s) 975
Eco88I CYCGRG 1 cut(s) 511
Eco91I GGTNACC 2 cut(s) 94, 1015
EcoICRI GAGCTC 4 cut(s) 15, 208, 322, 1186
EcoO65I GGTNACC 2 cut(s) 94, 1015
EcoRI GAATTC 1 cut(s) 383
EcoRII CCWGG 2 cut(s) 90, 422
EcoT14I CCWWGG 2 cut(s) 315, 735
EcoT38I GRGCYC 6 cut(s) 17, 210, 324, 660, 1030, 1188
ErhI CCWWGG 2 cut(s) 315, 735
FaqI GGGAC 2 cut(s) 23, 717
FauI CCCGC 2 cut(s) 337, 1343
FbaI TGATCA 1 cut(s) 633
FblI GTMKAC 1 cut(s) 1108
Fnu4HI GCNGC 6 cut(s) 240, 333, 500, 923, 1139, 1172
FokI GGATG 3 cut(s) 50, 121, 152
FriOI GRGCYC 6 cut(s) 17, 210, 324, 660, 1030, 1188
Fsp4HI GCNGC 6 cut(s) 240, 333, 500, 923, 1139, 1172
FspBI CTAG 4 cut(s) 35, 410, 458, 807
GlaI GCGC 2 cut(s) 450, 1098
GluI GCNGC 6 cut(s) 240, 333, 500, 923, 1139, 1172
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 3 cut(s) 524, 674, 1121
HaeII RGCGCY 1 cut(s) 1100
HaeIII GGCC 6 cut(s) 57, 176, 225, 314, 427, 1138
HapII CCGG 9 cut(s) 48, 149, 222, 243, 298, 512, 524, 689, 759
HhaI GCGC 2 cut(s) 451, 1099
Hin6I GCGC 2 cut(s) 449, 1097
HinP1I GCGC 2 cut(s) 449, 1097
HinfI GANTC 4 cut(s) 230, 581, 812, 994
HpaII CCGG 9 cut(s) 48, 149, 222, 243, 298, 512, 524, 689, 759
HphI GGTGA 4 cut(s) 88, 556, 1009, 1270
Hpy166II GTNNAC 2 cut(s) 723, 1109
Hpy188I TCNGA 8 cut(s) 170, 326, 771, 964, 993, 1039, 1341, 1375
Hpy188III TCNNGA 5 cut(s) 458, 572, 631, 653, 998
Hpy8I GTNNAC 2 cut(s) 723, 1109
Hpy99I CGWCG 3 cut(s) 128, 131, 347
HpyAV CCTTC 5 cut(s) 559, 595, 595, 941, 1277
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 2 cut(s) 402, 434
HpyCH4V TGCA 8 cut(s) 305, 362, 377, 519, 922, 1148, 1292, 1392
HpyF10VI GCNNNNNNNGC 4 cut(s) 311, 799, 898, 1298
HpyF3I CTNAG 6 cut(s) 323, 893, 975, 996, 1032, 1340
HpySE526I ACGT 2 cut(s) 402, 434
HspAI GCGC 2 cut(s) 449, 1097
Ksp22I TGATCA 1 cut(s) 633
LmnI GCTCC 8 cut(s) 92, 213, 319, 655, 837, 1033, 1183, 1273
Lsp1109I GCAGC 3 cut(s) 486, 934, 1158
LweI GCATC 3 cut(s) 271, 636, 1279
MaeI CTAG 4 cut(s) 35, 410, 458, 807
MaeII ACGT 2 cut(s) 402, 434
MaeIII GTNAC 3 cut(s) 94, 403, 1015
MbiI CCGCTC 1 cut(s) 840
MboII GAAGA 7 cut(s) 244, 548, 709, 712, 1276, 1343, 1347
MflI RGATCY 2 cut(s) 507, 649
MhlI GDGCHC 7 cut(s) 17, 210, 324, 660, 687, 1030, 1188
MlsI TGGCCA 1 cut(s) 427
MluCI AATT 6 cut(s) 383, 453, 594, 1197, 1376, 1422
MluNI TGGCCA 1 cut(s) 427
MlyI GAGTC 4 cut(s) 224, 590, 821, 988
MmeI TCCRAC 5 cut(s) 162, 258, 765, 1017, 1067
Mox20I TGGCCA 1 cut(s) 427
MscI TGGCCA 1 cut(s) 427
MseI TTAA 4 cut(s) 71, 590, 669, 1444
MslI CAYNNNNRTG 1 cut(s) 872
Msp20I TGGCCA 1 cut(s) 427
MspA1I CMGCKG 1 cut(s) 718
MspCI CTTAAG 2 cut(s) 589, 668
MspI CCGG 9 cut(s) 48, 149, 222, 243, 298, 512, 524, 689, 759
MspR9I CCNGG 6 cut(s) 48, 92, 424, 512, 513, 689
MvaI CCWGG 2 cut(s) 92, 424
MwoI GCNNNNNNNGC 4 cut(s) 311, 799, 898, 1298
NciI CCSGG 4 cut(s) 48, 512, 513, 689
NcoI CCATGG 2 cut(s) 315, 735
NlaIV GGNNCC 4 cut(s) 657, 714, 733, 1029
NmeAIII GCCGAG 2 cut(s) 290, 1073
NmuCI GTSAC 2 cut(s) 94, 1015
NspI RCATGY 2 cut(s) 29, 394
PciI ACATGT 1 cut(s) 25
PkrI GCNGC 6 cut(s) 241, 334, 501, 924, 1140, 1173
Ple19I CGATCG 1 cut(s) 173
PleI GAGTC 4 cut(s) 224, 589, 820, 988
PpsI GAGTC 4 cut(s) 224, 589, 820, 988
Ppu21I YACGTR 1 cut(s) 403
PscI ACATGT 1 cut(s) 25
Psp124BI GAGCTC 4 cut(s) 17, 210, 324, 1188
Psp1406I AACGTT 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 90, 422
PspEI GGTNACC 2 cut(s) 94, 1015
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 2 cut(s) 90, 422
PspN4I GGNNCC 4 cut(s) 657, 714, 733, 1029
PspPI GGNCC 3 cut(s) 55, 731, 767
PstI CTGCAG 1 cut(s) 364
PsuI RGATCY 2 cut(s) 507, 649
PvuI CGATCG 1 cut(s) 173
RsaI GTAC 2 cut(s) 401, 722
RsaNI GTAC 2 cut(s) 400, 721
RseI CAYNNNNRTG 1 cut(s) 872
SacI GAGCTC 4 cut(s) 17, 210, 324, 1188
SaqAI TTAA 4 cut(s) 71, 590, 669, 1444
SatI GCNGC 6 cut(s) 240, 333, 500, 923, 1139, 1172
Sau96I GGNCC 3 cut(s) 55, 731, 767
SchI GAGTC 4 cut(s) 224, 590, 821, 988
ScrFI CCNGG 6 cut(s) 48, 92, 424, 512, 513, 689
SduI GDGCHC 7 cut(s) 17, 210, 324, 660, 687, 1030, 1188
SfaNI GCATC 3 cut(s) 271, 636, 1279
SfcI CTRYAG 1 cut(s) 360
SinI GGWCC 2 cut(s) 731, 767
SmaI CCCGGG 1 cut(s) 513
SmiMI CAYNNNNRTG 1 cut(s) 872
SmlI CTYRAG 4 cut(s) 395, 589, 668, 1187
SmoI CTYRAG 4 cut(s) 395, 589, 668, 1187
SnaBI TACGTA 1 cut(s) 403
Sse9I AATT 6 cut(s) 383, 453, 594, 1197, 1376, 1422
SspMI CTAG 4 cut(s) 35, 410, 458, 807
SstI GAGCTC 4 cut(s) 17, 210, 324, 1188
StyD4I CCNGG 6 cut(s) 46, 90, 422, 510, 511, 687
StyI CCWWGG 2 cut(s) 315, 735
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 2 cut(s) 405, 437
TaqI TCGA 4 cut(s) 279, 345, 529, 1201
TaqII GACCGA 1 cut(s) 719
TasI AATT 6 cut(s) 383, 453, 594, 1197, 1376, 1422
TatI WGTACW 1 cut(s) 720
TauI GCSGC 3 cut(s) 242, 335, 1141
Tru1I TTAA 4 cut(s) 71, 590, 669, 1444
Tru9I TTAA 4 cut(s) 71, 590, 669, 1444
TscAI CASTG 5 cut(s) 364, 376, 1065, 1085, 1435
TseFI GTSAC 2 cut(s) 94, 1015
TseI GCWGC 3 cut(s) 499, 922, 1171
Tsp45I GTSAC 2 cut(s) 94, 1015
TspDTI ATGAA 3 cut(s) 123, 572, 973
TspMI CCCGGG 1 cut(s) 511
TspRI CASTG 5 cut(s) 364, 376, 1065, 1085, 1435
Vha464I CTTAAG 2 cut(s) 589, 668
VpaK11BI GGWCC 2 cut(s) 731, 767
XapI RAATTY 1 cut(s) 383
XbaI TCTAGA 1 cut(s) 457
XceI RCATGY 2 cut(s) 29, 394
XcmI CCANNNNNNNNNTGG 2 cut(s) 742, 1131
XmaI CCCGGG 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 1108
XspI CTAG 4 cut(s) 35, 410, 458, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.