Rh1AG279800

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003264
Physical Location & Seq
Forward (+)
50831158 .. 50834287
3130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG279800.1

Sequence Viewer

Length: 1440 bp
ATGACTTCCACGGAGGACATGAGCTCAAAAGCATTTGTGCTGCTAGTACCCAGCCCCGGCATGGGACACCTCATCCCCTTCTTGGAGCTCGCCAACTGCCTCGTCGAGCATCACAATTTCCACGCCACAGTCGTCGTCATTTCATCCAACACTTCTCCTGCACAATCCCAGGTCATCCAATCCGCCATGACCCCGAAACTTTTCGACATCATTGAGCTTCCACCACTAGACACCTCCGGCCAAGTCAACGCTGCTGGTTCAGTCTTCACACAGCTCCCGGCCATTATGCTTGATGCCCGGTCCTCTCTCCGGTCCGCCATCTCGGCCATGGAGTTCAAGCCGGCAGCCATGATCGTCGATCTTTTCGGCACCGCTGTTCTTCCCGTGGCCGATGATTTCCACATGCTCAAGTATGTAAGAGTCTCGTGTGCTTGGCCTCTTGCCCTGCTTTTATACGCTCCTATTCTAGATAAGGAGGTGGAAGGAGAATACTTGGATCAAAAAGAACCGCTCAAGATCCCGGGTTGCAAGCCTGTTCGACCGGAAGATGTTGTTAAGCCCATGATGAACAGAAAAGATCCCGAATACGAGTCCTTCATACGTATTGGGGTAGAGATAGGCGAGATGAGTGATGGGATTTTGGTCAACACTTGGGAAGATCTGGAGTCAATGAGTCTTAGACCCATGAGAGAGGATCCAGAGTGGAAGCAGATCCTAAAGGTTCCGGTCCATACTTTCGGTCCCATGATTAGGCCGGCAGGGCGCTCCACTCCGAGGAGCGAGGTGTTGGGTTGGCTGGACATGCAGCCCAATGCCTCTGTGATTTACATTTCTTTTGGGAGCGGTGGGGTTCTGTCGGCTGATCAAATTACCGAGATGGCTTGGGGTATAGAGCTTAGCGCTCAGAGATTTATATGGGTAGTGCATCCACCAAGCAAAGATGGTGACAGAGGCAATGACATTTCAGACTACTTGCCTGAAGGGTTCATGGCTCGGACTCGTGACAAGGGTCTAGTGGTCACCACTTGGGCTCCTCAGGTGGAAATCTTGGCTCATTCATCAGTCGGAGGGTTCTTGTCACACTGTGGTTGGAACTCGTCGCTGGAGAGTATACTGAATGGTGTGCCAATGATCGCATGGCCGCTCTATGCCGAGCAGAAAATGATTGCCACGTTTTTCGTGGAGGAGCTGAAGGTGGCGATTAGACCTAAAGTTCTGCCGGCAAAGAGGATAGTAAGGAGGGAGGAGATTGAGATGATGGTGAGGAAGATTGTGGAGGAGAAAGAAGGAGATGTAATGAGGGCAAGAGCTAAAGAGCTAAAAAAGAGTGGGGAAGCAGCTTTGAGTGAAGGTGGGTCTTCGTTCAAGACACTCTCTGCATTGGCAAAGCTCTGCCAGCACAACTCGCAACATCAGAAAGTTGGTAGTGCGTTGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

479

Amino Acids

52.92

Weight (kDa)

5.66

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 271 - 391 1.1e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 368
AccBSI CCGCTC 3 cut(s) 511, 843, 1144
AccI GTMKAC 1 cut(s) 1111
AciI CCGC 6 cut(s) 183, 315, 372, 509, 843, 1142
AclWI GGATC 6 cut(s) 504, 511, 572, 689, 702, 706
AcoI YGGCCR 5 cut(s) 238, 279, 324, 387, 1139
AcuI CTGAAG 2 cut(s) 999, 1211
AdeI CACNNNGTG 1 cut(s) 1085
AfaI GTAC 1 cut(s) 48
AfeI AGCGCT 1 cut(s) 901
AfiI CCNNNNNNNGG 7 cut(s) 56, 61, 62, 82, 309, 750, 774
AgsI TTSAA 2 cut(s) 337, 1366
AjnI CCWGG 1 cut(s) 168
Alw21I GWGCWC 2 cut(s) 26, 90
Alw26I GTCTC 1 cut(s) 427
AlwI GGATC 6 cut(s) 504, 511, 572, 689, 702, 706
Ama87I CYCGRG 1 cut(s) 520
Aor51HI AGCGCT 1 cut(s) 901
AoxI GGCC 7 cut(s) 238, 279, 324, 387, 434, 752, 1139
ApeKI GCWGC 5 cut(s) 40, 251, 344, 805, 1337
Asp700I GAANNNNTTC 1 cut(s) 200
AspLEI GCGC 2 cut(s) 765, 902
AspS9I GGNCC 4 cut(s) 300, 312, 727, 740
AsuC2I CCSGG 5 cut(s) 57, 278, 298, 521, 522
AsuHPI GGTGA 3 cut(s) 956, 1012, 1273
AvaI CYCGRG 1 cut(s) 520
AvaII GGWCC 4 cut(s) 300, 312, 727, 740
AxyI CCTNAGG 1 cut(s) 1035
BamHI GGATCC 1 cut(s) 694
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 3 cut(s) 26, 90, 1033
BauI CACGAG 2 cut(s) 424, 999
BbsI GAAGAC 2 cut(s) 256, 1350
Bbv12I GWGCWC 2 cut(s) 26, 90
BbvI GCAGC 5 cut(s) 27, 238, 356, 817, 1349
BccI CCATC 5 cut(s) 326, 626, 871, 935, 1252
BciT130I CCWGG 1 cut(s) 170
BclI TGATCA 1 cut(s) 862
BcnI CCSGG 5 cut(s) 57, 278, 298, 521, 522
BcoDI GTCTC 1 cut(s) 427
BfaI CTAG 4 cut(s) 44, 227, 467, 1013
BfoI RGCGCY 2 cut(s) 766, 903
BglI GCCNNNNNGGC 2 cut(s) 323, 760
BglII AGATCT 1 cut(s) 658
BisI GCNGC 6 cut(s) 41, 252, 345, 806, 1142, 1338
BlpI GCTNAGC 1 cut(s) 896
BlsI GCNGC 6 cut(s) 42, 253, 346, 807, 1143, 1339
Bme1390I CCNGG 6 cut(s) 57, 170, 278, 298, 521, 522
Bme18I GGWCC 4 cut(s) 300, 312, 727, 740
BmeT110I CYCGRG 1 cut(s) 520
BmgT120I GGNCC 4 cut(s) 300, 312, 727, 740
BmiI GGNNCC 5 cut(s) 370, 696, 723, 742, 1032
BmrFI CCNGG 6 cut(s) 57, 170, 278, 298, 521, 522
BmsI GCATC 3 cut(s) 118, 283, 934
BoxI GACNNNNGTC 1 cut(s) 1008
BpiI GAAGAC 2 cut(s) 256, 1350
BpmI CTGGAG 2 cut(s) 683, 1124
Bpu1102I GCTNAGC 1 cut(s) 896
BpuEI CTTGAG 2 cut(s) 392, 497
BpuMI CCSGG 5 cut(s) 57, 278, 298, 521, 522
BsaAI YACGTR 1 cut(s) 602
BsaJI CCNNGG 7 cut(s) 9, 55, 168, 327, 384, 520, 773
BsaWI WCCGGW 3 cut(s) 309, 541, 724
BsaXI ACNNNNNCTCC 2 cut(s) 1015, 1045
Bsc4I CCNNNNNNNGG 7 cut(s) 56, 61, 62, 82, 309, 750, 774
Bse118I RCCGGY 3 cut(s) 340, 754, 1219
Bse21I CCTNAGG 1 cut(s) 1035
Bse3DI GCAATG 1 cut(s) 961
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 7 cut(s) 9, 55, 168, 327, 384, 520, 773
BseGI GGATG 4 cut(s) 72, 143, 174, 925
BseLI CCNNNNNNNGG 7 cut(s) 56, 61, 62, 82, 309, 750, 774
BseMI GCAATG 1 cut(s) 961
BseMII CTCAG 2 cut(s) 917, 1049
BseRI GAGGAG 5 cut(s) 790, 1023, 1199, 1259, 1292
BseXI GCAGC 5 cut(s) 27, 238, 356, 817, 1349
BseYI CCCAGC 1 cut(s) 50
BsgI GTGCAG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 542
BshFI GGCC 7 cut(s) 240, 281, 326, 389, 436, 754, 1141
BshNI GGYRCC 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 542
BsiHKAI GWGCWC 2 cut(s) 26, 90
BsiHKCI CYCGRG 1 cut(s) 520
BslFI GGGAC 2 cut(s) 78, 726
BslI CCNNNNNNNGG 7 cut(s) 56, 61, 62, 82, 309, 750, 774
BsmAI GTCTC 1 cut(s) 427
BsmFI GGGAC 2 cut(s) 78, 726
BsnI GGCC 7 cut(s) 240, 281, 326, 389, 436, 754, 1141
BsoBI CYCGRG 1 cut(s) 520
Bsp1286I GDGCHC 3 cut(s) 26, 90, 1033
Bsp1720I GCTNAGC 1 cut(s) 896
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 6 cut(s) 183, 315, 372, 509, 843, 1142
BspANI GGCC 7 cut(s) 240, 281, 326, 389, 436, 754, 1141
BspCNI CTCAG 2 cut(s) 916, 1048
BspLI GGNNCC 5 cut(s) 370, 696, 723, 742, 1032
BspPI GGATC 6 cut(s) 504, 511, 572, 689, 702, 706
BspT107I GGYRCC 1 cut(s) 368
BsrBI CCGCTC 3 cut(s) 511, 843, 1144
BsrDI GCAATG 1 cut(s) 961
BsrFI RCCGGY 3 cut(s) 340, 754, 1219
BssAI RCCGGY 3 cut(s) 340, 754, 1219
BssECI CCNNGG 7 cut(s) 9, 55, 168, 327, 384, 520, 773
BssNAI GTATAC 1 cut(s) 1112
BssSI CACGAG 2 cut(s) 424, 999
BssT1I CCWWGG 1 cut(s) 327
Bst1107I GTATAC 1 cut(s) 1112
Bst2BI CACGAG 2 cut(s) 424, 999
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 130, 1085
BstBAI YACGTR 1 cut(s) 602
BstC8I GCNNGC 6 cut(s) 90, 342, 530, 756, 1221, 1397
BstDEI CTNAG 4 cut(s) 677, 896, 903, 1035
BstDSI CCRYGG 3 cut(s) 9, 327, 384
BstEII GGTNACC 1 cut(s) 1018
BstF5I GGATG 4 cut(s) 72, 143, 174, 925
BstH2I RGCGCY 2 cut(s) 766, 903
BstHHI GCGC 2 cut(s) 765, 902
BstMAI GTCTC 1 cut(s) 427
BstMCI CGRYCG 1 cut(s) 542
BstMWI GCNNNNNNNGC 5 cut(s) 323, 760, 802, 1396, 1405
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 2 cut(s) 406, 805
BstPAI GACNNNNGTC 1 cut(s) 1008
BstPI GGTNACC 1 cut(s) 1018
BstSCI CCNGG 6 cut(s) 55, 168, 276, 296, 519, 520
BstSNI TACGTA 1 cut(s) 602
BstV1I GCAGC 5 cut(s) 27, 238, 356, 817, 1349
BstV2I GAAGAC 2 cut(s) 256, 1350
BstX2I RGATCY 5 cut(s) 516, 577, 658, 694, 711
BstYI RGATCY 5 cut(s) 516, 577, 658, 694, 711
BstZ17I GTATAC 1 cut(s) 1112
Bsu36I CCTNAGG 1 cut(s) 1035
BsuRI GGCC 7 cut(s) 240, 281, 326, 389, 436, 754, 1141
BtgI CCRYGG 3 cut(s) 9, 327, 384
BtsCI GGATG 4 cut(s) 72, 143, 174, 925
BtsIMutI CAGTG 1 cut(s) 1081
Cac8I GCNNGC 6 cut(s) 90, 342, 530, 756, 1221, 1397
CfoI GCGC 2 cut(s) 765, 902
Cfr10I RCCGGY 3 cut(s) 340, 754, 1219
Cfr13I GGNCC 4 cut(s) 300, 312, 727, 740
Cfr9I CCCGGG 1 cut(s) 520
CpoI CGGWCCG 1 cut(s) 312
Csp6I GTAC 1 cut(s) 47
CspI CGGWCCG 1 cut(s) 312
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 4 cut(s) 677, 896, 903, 1035
DraIII CACNNNGTG 1 cut(s) 1085
EaeI YGGCCR 5 cut(s) 238, 279, 324, 387, 1139
EciI GGCGGA 2 cut(s) 172, 304
Ecl136II GAGCTC 2 cut(s) 24, 88
Eco105I TACGTA 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 327
Eco24I GRGCYC 3 cut(s) 26, 90, 1033
Eco47I GGWCC 4 cut(s) 300, 312, 727, 740
Eco47III AGCGCT 1 cut(s) 901
Eco53kI GAGCTC 2 cut(s) 24, 88
Eco57I CTGAAG 2 cut(s) 999, 1211
Eco81I CCTNAGG 1 cut(s) 1035
Eco88I CYCGRG 1 cut(s) 520
Eco91I GGTNACC 1 cut(s) 1018
EcoICRI GAGCTC 2 cut(s) 24, 88
EcoO65I GGTNACC 1 cut(s) 1018
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 327
EcoT38I GRGCYC 3 cut(s) 26, 90, 1033
ErhI CCWWGG 1 cut(s) 327
FaqI GGGAC 2 cut(s) 78, 726
FbaI TGATCA 1 cut(s) 862
FblI GTMKAC 1 cut(s) 1111
Fnu4HI GCNGC 6 cut(s) 41, 252, 345, 806, 1142, 1338
FokI GGATG 4 cut(s) 59, 130, 161, 912
FriOI GRGCYC 3 cut(s) 26, 90, 1033
Fsp4HI GCNGC 6 cut(s) 41, 252, 345, 806, 1142, 1338
FspBI CTAG 4 cut(s) 44, 227, 467, 1013
GlaI GCGC 2 cut(s) 764, 901
GluI GCNGC 6 cut(s) 41, 252, 345, 806, 1142, 1338
GsaI CCCAGC 1 cut(s) 54
GsuI CTGGAG 2 cut(s) 683, 1124
HaeII RGCGCY 2 cut(s) 766, 903
HaeIII GGCC 7 cut(s) 240, 281, 326, 389, 436, 754, 1141
HhaI GCGC 2 cut(s) 765, 902
Hin6I GCGC 2 cut(s) 763, 900
HinP1I GCGC 2 cut(s) 763, 900
HincII GTYRAC 3 cut(s) 247, 646, 1434
HindII GTYRAC 3 cut(s) 247, 646, 1434
HinfI GANTC 5 cut(s) 420, 590, 665, 673, 997
HphI GGTGA 3 cut(s) 956, 1012, 1273
Hpy166II GTNNAC 4 cut(s) 247, 646, 1112, 1434
Hpy188I TCNGA 6 cut(s) 774, 906, 967, 996, 1067, 1416
Hpy188III TCNNGA 7 cut(s) 467, 514, 581, 662, 698, 1001, 1366
Hpy8I GTNNAC 4 cut(s) 247, 646, 1112, 1434
Hpy99I CGWCG 4 cut(s) 107, 137, 359, 1102
HpyAV CCTTC 7 cut(s) 88, 476, 604, 974, 1186, 1280, 1343
HpyCH4III ACNGT 2 cut(s) 130, 1085
HpyCH4IV ACGT 2 cut(s) 601, 1172
HpyCH4V TGCA 5 cut(s) 161, 528, 805, 925, 1379
HpyF10VI GCNNNNNNNGC 5 cut(s) 323, 760, 802, 1396, 1405
HpyF3I CTNAG 4 cut(s) 677, 896, 903, 1035
HpySE526I ACGT 2 cut(s) 601, 1172
HspAI GCGC 2 cut(s) 763, 900
KroI GCCGGC 3 cut(s) 340, 754, 1219
KroNI GCCGGC 3 cut(s) 342, 756, 1221
Ksp22I TGATCA 1 cut(s) 862
LmnI GCTCC 8 cut(s) 85, 279, 463, 770, 777, 840, 1036, 1186
Lsp1109I GCAGC 5 cut(s) 27, 238, 356, 817, 1349
LweI GCATC 3 cut(s) 118, 283, 934
MaeI CTAG 4 cut(s) 44, 227, 467, 1013
MaeII ACGT 2 cut(s) 601, 1172
MaeIII GTNAC 4 cut(s) 944, 1001, 1018, 1077
MbiI CCGCTC 3 cut(s) 511, 843, 1144
MboII GAAGA 6 cut(s) 256, 371, 557, 668, 1279, 1350
MflI RGATCY 5 cut(s) 516, 577, 658, 694, 711
MhlI GDGCHC 3 cut(s) 26, 90, 1033
MluCI AATT 2 cut(s) 115, 867
MlyI GAGTC 5 cut(s) 429, 599, 674, 682, 991
MmeI TCCRAC 3 cut(s) 171, 1045, 1070
MroNI GCCGGC 3 cut(s) 340, 754, 1219
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 374
MspR9I CCNGG 6 cut(s) 57, 170, 278, 298, 521, 522
MvaI CCWGG 1 cut(s) 170
MwoI GCNNNNNNNGC 5 cut(s) 323, 760, 802, 1396, 1405
NaeI GCCGGC 3 cut(s) 342, 756, 1221
NciI CCSGG 5 cut(s) 57, 278, 298, 521, 522
NcoI CCATGG 1 cut(s) 327
NgoMIV GCCGGC 3 cut(s) 340, 754, 1219
NlaIV GGNNCC 5 cut(s) 370, 696, 723, 742, 1032
NmeAIII GCCGAG 2 cut(s) 302, 1177
NmuCI GTSAC 4 cut(s) 944, 1001, 1018, 1077
NspI RCATGY 2 cut(s) 406, 805
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdiI GCCGGC 3 cut(s) 342, 756, 1221
PdmI GAANNNNTTC 1 cut(s) 200
PkrI GCNGC 6 cut(s) 42, 253, 346, 807, 1143, 1339
PleI GAGTC 5 cut(s) 428, 598, 673, 681, 991
PpsI GAGTC 5 cut(s) 428, 598, 673, 681, 991
Ppu21I YACGTR 1 cut(s) 602
PshAI GACNNNNGTC 1 cut(s) 1008
Psp124BI GAGCTC 2 cut(s) 26, 90
Psp6I CCWGG 1 cut(s) 168
PspEI GGTNACC 1 cut(s) 1018
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 5 cut(s) 370, 696, 723, 742, 1032
PspPI GGNCC 4 cut(s) 300, 312, 727, 740
PsuI RGATCY 5 cut(s) 516, 577, 658, 694, 711
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
Rsr2I CGGWCCG 1 cut(s) 312
RsrII CGGWCCG 1 cut(s) 312
SacI GAGCTC 2 cut(s) 26, 90
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 6 cut(s) 41, 252, 345, 806, 1142, 1338
Sau96I GGNCC 4 cut(s) 300, 312, 727, 740
SchI GAGTC 5 cut(s) 429, 599, 674, 682, 991
ScrFI CCNGG 6 cut(s) 57, 170, 278, 298, 521, 522
SduI GDGCHC 3 cut(s) 26, 90, 1033
SfaNI GCATC 3 cut(s) 118, 283, 934
SinI GGWCC 4 cut(s) 300, 312, 727, 740
SmaI CCCGGG 1 cut(s) 522
SmlI CTYRAG 2 cut(s) 407, 512
SmoI CTYRAG 2 cut(s) 407, 512
SnaBI TACGTA 1 cut(s) 602
Sse9I AATT 2 cut(s) 115, 867
SsiI CCGC 6 cut(s) 183, 315, 372, 509, 843, 1142
SspMI CTAG 4 cut(s) 44, 227, 467, 1013
SstI GAGCTC 2 cut(s) 26, 90
StyD4I CCNGG 6 cut(s) 55, 168, 276, 296, 519, 520
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 2 cut(s) 130, 1085
TaiI ACGT 2 cut(s) 604, 1175
TaqI TCGA 4 cut(s) 105, 204, 357, 538
TaqII GACCGA 1 cut(s) 728
TasI AATT 2 cut(s) 115, 867
TauI GCSGC 1 cut(s) 1144
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 1 cut(s) 1088
TseFI GTSAC 4 cut(s) 944, 1001, 1018, 1077
TseI GCWGC 5 cut(s) 40, 251, 344, 805, 1337
Tsp45I GTSAC 4 cut(s) 944, 1001, 1018, 1077
TspDTI ATGAA 5 cut(s) 132, 581, 586, 976, 1047
TspGWI ACGGA 1 cut(s) 26
TspMI CCCGGG 1 cut(s) 520
TspRI CASTG 1 cut(s) 1088
VpaK11BI GGWCC 4 cut(s) 300, 312, 727, 740
XbaI TCTAGA 1 cut(s) 466
XceI RCATGY 2 cut(s) 406, 805
XcmI CCANNNNNNNNNTGG 4 cut(s) 58, 325, 1134, 1177
XmaI CCCGGG 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 1111
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 4 cut(s) 44, 227, 467, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.