Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003264

Physical Location & Seq

Genomic Coordinates Reverse (-)

13339515 .. 13340437

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017143

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTCGGAGATGAGCTCAAAACCACATGCGCTGCTAGTCCCAAGCCCCGGCATGGGCCACCTCATCTCCTTGTTGAAGCTCGCCACCTGCCTAGCCACCCATCACAACTTCCATGCCACGGTCCTCATCGTTTCATCCAACACCTCTCCTGCACTATCACAGGTCCTCCAATCCGCCCAGTCCCAAAAGCTCCTTGGCATCATTGAGCTACCAGCACCCTCCGGCCACGACACTAATGCCGCCGGTTCAGTGTTCACACACCTCCCAGCCATCATGCGTGATGTCCGACCATCCCTCCAATCCGCAATTTCGGCCATGGAGCACAAGGCTAGCGCCATGATCGCCGTGGCAGAAGAGTTTAATATGCTCAAGTATGTAACAGCAGCCTCTGCTTGGACACTAAGTTTACTTTTGTATGCGCCAATCCTGGATAAGCAGATAGAAGGAGAATATCTGTCACCACTTGGGCTCCTCAGTCGGAAATCTTGGCACATGCATCCGTTGGAGGGTTCCTATAGCACTGCGAAAATGGTTGCTACACTGCTGGTGGAGGAGCTAAAGGTGGCGATTCGACCTAAAGTCTTGCCAACAAAAGCAGTAGCAGGGAAGGAGGAGATTGAGATGTTGGTGAGGAAGATTACAGAGCAGAAAGACGGAGATGCAATGAGAGCAAGAGCTAAAGAACTGAAAGCAAATGGGGAAAAAGCTCTCCGTGTGGGTGGGTCTTCTTTCAACATGCTGTCTGAATTGTCAAGGCTATGCAAGATCAATACTGAACAGCAGTGCCAGACAGTTGGGACTGATCAGTTGGGACCCAGGCGGTTGTTCGTGTTGCTAGTCTTCTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

284

Amino Acids

30.79

Weight (kDa)

8.91

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13970 FvH4_1g13990 FvH4_1g14000
rosa_chinensis	RchiOBHm_Chr2g0102291 RchiOBHm_Chr5g0049051
rosa_laevigata	RLG00000017143 RLG00000027915 RLG00000029969 RLG00000034587
rosa_multiflora	Rmu_co8035894.1_g000001 Rmu_sc0000530.1_g000029 Rmu_sc0005055.1_g000021 Rmu_sc0008757.1_g000011 Rmu_sc0030874.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032820 Rroxscaffold_2G00140590 Rroxscaffold_2G00140600 Rroxscaffold_4G00297540 Rroxscaffold_4G00322380
rosa_rugosa	Rorug01G0070700 Rorug01G0070800 Rorug01G0266200 Rorug01G0266200 Rorug02G0106200 Rorug05G0242800
rosa_samantha	Rh1AG279800 Rh1BG069800 Rh1CG263900 Rh1DG091500 Rh2BG160200 Rh2BG160300 Rh2CG159800 Rh5AG322500 Rh5BG332800 Rh5CG357900
rosa_wichuraiana	Rw1G024870 Rw5G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	95
AciI	CCGC	4 cut(s)	174, 240, 303, 820
AcoI	YGGCCR	2 cut(s)	223, 312
AfiI	CCNNNNNNNGG	6 cut(s)	47, 52, 53, 118, 393, 506
AgsI	TTSAA	2 cut(s)	76, 733
AhdI	GACNNNNNGTC	1 cut(s)	578
AjnI	CCWGG	2 cut(s)	426, 815
AluBI	AGCT	7 cut(s)	15, 79, 190, 208, 556, 677, 707
AluI	AGCT	7 cut(s)	15, 79, 190, 208, 556, 677, 707
Alw21I	GWGCWC	2 cut(s)	17, 324
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	3 cut(s)	55, 223, 312
ApeKI	GCWGC	2 cut(s)	31, 383
AspLEI	GCGC	3 cut(s)	31, 335, 421
AspS9I	GGNCC	4 cut(s)	55, 121, 163, 812
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	2 cut(s)	450, 640
AsuNHI	GCTAGC	1 cut(s)	329
AvaII	GGWCC	3 cut(s)	121, 163, 812
BanII	GRGCYC	2 cut(s)	17, 471
BbsI	GAAGAC	2 cut(s)	717, 832
Bbv12I	GWGCWC	2 cut(s)	17, 324
BbvI	GCAGC	2 cut(s)	18, 395
BccI	CCATC	3 cut(s)	108, 278, 298
BceAI	ACGGC	1 cut(s)	329
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	2 cut(s)	428, 817
BclI	TGATCA	1 cut(s)	802
BcnI	CCSGG	1 cut(s)	48
BfaI	CTAG	4 cut(s)	35, 92, 330, 836
BfmI	CTRYAG	1 cut(s)	514
BfoI	RGCGCY	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	95
BisI	GCNGC	3 cut(s)	32, 240, 384
BlsI	GCNGC	3 cut(s)	33, 241, 385
Bme1390I	CCNGG	3 cut(s)	48, 428, 817
Bme18I	GGWCC	3 cut(s)	121, 163, 812
BmeRI	GACNNNNNGTC	1 cut(s)	578
BmgT120I	GGNCC	4 cut(s)	55, 121, 163, 812
BmiI	GGNNCC	4 cut(s)	470, 511, 813, 814
BmrFI	CCNGG	3 cut(s)	48, 428, 817
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	3 cut(s)	207, 505, 649
BmtI	GCTAGC	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	172
BpiI	GAAGAC	2 cut(s)	717, 832
BplI	GAGNNNNNCTC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	1 cut(s)	48
BsaJI	CCNNGG	6 cut(s)	46, 117, 193, 315, 345, 815
BsaXI	ACNNNNNCTCC	8 cut(s)	50, 80, 150, 180, 279, 309, 453, 483
Bsc4I	CCNNNNNNNGG	6 cut(s)	47, 52, 53, 118, 393, 506
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	669
BseBI	CCWGG	2 cut(s)	428, 817
BseDI	CCNNGG	6 cut(s)	46, 117, 193, 315, 345, 815
BseGI	GGATG	3 cut(s)	134, 290, 496
BseLI	CCNNNNNNNGG	6 cut(s)	47, 52, 53, 118, 393, 506
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	1 cut(s)	487
BseNI	ACTGG	1 cut(s)	178
BseRI	GAGGAG	3 cut(s)	461, 566, 626
BseXI	GCAGC	2 cut(s)	18, 395
BseYI	CCCAGC	1 cut(s)	265
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	3 cut(s)	57, 225, 314
BsiHKAI	GWGCWC	2 cut(s)	17, 324
BsiSI	CCGG	3 cut(s)	48, 222, 243
BslFI	GGGAC	4 cut(s)	23, 166, 811, 825
BslI	CCNNNNNNNGG	6 cut(s)	47, 52, 53, 118, 393, 506
BsmFI	GGGAC	4 cut(s)	23, 166, 811, 825
BsnI	GGCC	3 cut(s)	57, 225, 314
Bsp1286I	GDGCHC	3 cut(s)	17, 324, 471
Bsp143I	GATC	3 cut(s)	339, 765, 802
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	4 cut(s)	174, 240, 303, 820
BspANI	GGCC	3 cut(s)	57, 225, 314
BspCNI	CTCAG	1 cut(s)	486
BspLI	GGNNCC	4 cut(s)	470, 511, 813, 814
BspMI	ACCTGC	1 cut(s)	95
BspOI	GCTAGC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	669
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	6 cut(s)	46, 117, 193, 315, 345, 815
BssMI	GATC	3 cut(s)	339, 765, 802
BssT1I	CCWWGG	2 cut(s)	193, 315
Bst2UI	CCWGG	2 cut(s)	428, 817
Bst4CI	ACNGT	2 cut(s)	121, 793
Bst6I	CTCTTC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	81, 331
BstDEI	CTNAG	2 cut(s)	401, 473
BstDSI	CCRYGG	3 cut(s)	117, 315, 345
BstF5I	GGATG	3 cut(s)	134, 290, 496
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	3 cut(s)	31, 335, 421
BstKTI	GATC	3 cut(s)	342, 768, 805
BstMBI	GATC	3 cut(s)	339, 765, 802
BstMWI	GCNNNNNNNGC	4 cut(s)	311, 341, 389, 668
BstNI	CCWGG	2 cut(s)	428, 817
BstNSI	RCATGY	3 cut(s)	29, 496, 739
BstSCI	CCNGG	3 cut(s)	46, 426, 815
BstSFI	CTRYAG	1 cut(s)	514
BstV1I	GCAGC	2 cut(s)	18, 395
BstV2I	GAAGAC	2 cut(s)	717, 832
BstXI	CCANNNNNNTGG	1 cut(s)	794
BsuRI	GGCC	3 cut(s)	57, 225, 314
BtgI	CCRYGG	3 cut(s)	117, 315, 345
BtsCI	GGATG	3 cut(s)	134, 290, 496
BtsI	GCAGTG	3 cut(s)	519, 539, 788
BtsIMutI	CAGTG	4 cut(s)	255, 519, 539, 788
BveI	ACCTGC	1 cut(s)	95
Cac8I	GCNNGC	2 cut(s)	81, 331
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	3 cut(s)	31, 335, 421
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	4 cut(s)	55, 121, 163, 812
CviAII	CATG	8 cut(s)	26, 52, 113, 274, 316, 337, 493, 736
DdeI	CTNAG	2 cut(s)	401, 473
DpnI	GATC	3 cut(s)	341, 767, 804
DpnII	GATC	3 cut(s)	339, 765, 802
DriI	GACNNNNNGTC	1 cut(s)	578
EaeI	YGGCCR	2 cut(s)	223, 312
Eam1104I	CTCTTC	1 cut(s)	348
Eam1105I	GACNNNNNGTC	1 cut(s)	578
EarI	CTCTTC	1 cut(s)	348
EciI	GGCGGA	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	193, 315
Eco24I	GRGCYC	2 cut(s)	17, 471
Eco47I	GGWCC	3 cut(s)	121, 163, 812
Eco53kI	GAGCTC	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	15
EcoO109I	RGGNCCY	2 cut(s)	163, 812
EcoRII	CCWGG	2 cut(s)	426, 815
EcoT14I	CCWWGG	2 cut(s)	193, 315
EcoT22I	ATGCAT	1 cut(s)	498
EcoT38I	GRGCYC	2 cut(s)	17, 471
ErhI	CCWWGG	2 cut(s)	193, 315
FaeI	CATG	8 cut(s)	29, 55, 116, 277, 319, 340, 496, 739
FaqI	GGGAC	4 cut(s)	23, 166, 811, 825
FatI	CATG	8 cut(s)	25, 51, 112, 273, 315, 336, 492, 735
FbaI	TGATCA	1 cut(s)	802
Fnu4HI	GCNGC	3 cut(s)	32, 240, 384
FokI	GGATG	3 cut(s)	121, 277, 483
FriOI	GRGCYC	2 cut(s)	17, 471
Fsp4HI	GCNGC	3 cut(s)	32, 240, 384
FspBI	CTAG	4 cut(s)	35, 92, 330, 836
GlaI	GCGC	3 cut(s)	30, 334, 420
GluI	GCNGC	3 cut(s)	32, 240, 384
GsaI	CCCAGC	1 cut(s)	269
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	3 cut(s)	57, 225, 314
HapII	CCGG	3 cut(s)	48, 222, 243
HhaI	GCGC	3 cut(s)	31, 335, 421
Hin1II	CATG	8 cut(s)	29, 55, 116, 277, 319, 340, 496, 739
Hin6I	GCGC	3 cut(s)	29, 333, 419
HinP1I	GCGC	3 cut(s)	29, 333, 419
HinfI	GANTC	1 cut(s)	568
HpaII	CCGG	3 cut(s)	48, 222, 243
HphI	GGTGA	2 cut(s)	450, 640
Hpy166II	GTNNAC	2 cut(s)	255, 407
Hpy188I	TCNGA	4 cut(s)	7, 287, 480, 745
Hpy8I	GTNNAC	2 cut(s)	255, 407
HpyAV	CCTTC	2 cut(s)	437, 601
HpyCH4III	ACNGT	2 cut(s)	121, 793
HpyCH4V	TGCA	4 cut(s)	152, 496, 662, 762
HpyF10VI	GCNNNNNNNGC	4 cut(s)	311, 341, 389, 668
HpyF3I	CTNAG	2 cut(s)	401, 473
Hsp92II	CATG	8 cut(s)	29, 55, 116, 277, 319, 340, 496, 739
HspAI	GCGC	3 cut(s)	29, 333, 419
KflI	GGGWCCC	1 cut(s)	812
Ksp22I	TGATCA	1 cut(s)	802
Kzo9I	GATC	3 cut(s)	339, 765, 802
LmnI	GCTCC	4 cut(s)	195, 319, 474, 553
Lsp1109I	GCAGC	2 cut(s)	18, 395
LweI	GCATC	3 cut(s)	207, 505, 649
MaeI	CTAG	4 cut(s)	35, 92, 330, 836
MaeIII	GTNAC	2 cut(s)	376, 456
MalI	GATC	3 cut(s)	341, 767, 804
MboI	GATC	3 cut(s)	339, 765, 802
MboII	GAAGA	4 cut(s)	365, 646, 717, 832
MhlI	GDGCHC	3 cut(s)	17, 324, 471
MluCI	AATT	2 cut(s)	306, 746
MmeI	TCCRAC	4 cut(s)	162, 310, 458, 483
Mph1103I	ATGCAT	1 cut(s)	498
MseI	TTAA	1 cut(s)	360
MspI	CCGG	3 cut(s)	48, 222, 243
MspR9I	CCNGG	3 cut(s)	48, 428, 817
MvaI	CCWGG	2 cut(s)	428, 817
MwoI	GCNNNNNNNGC	4 cut(s)	311, 341, 389, 668
NciI	CCSGG	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	3 cut(s)	339, 765, 802
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	8 cut(s)	29, 55, 116, 277, 319, 340, 496, 739
NlaIV	GGNNCC	4 cut(s)	470, 511, 813, 814
NmuCI	GTSAC	1 cut(s)	456
NsiI	ATGCAT	1 cut(s)	498
NspI	RCATGY	3 cut(s)	29, 496, 739
PaqCI	CACCTGC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	568
PfoI	TCCNGGA	1 cut(s)	426
PkrI	GCNGC	3 cut(s)	33, 241, 385
PpuMI	RGGWCCY	2 cut(s)	163, 812
Psp124BI	GAGCTC	1 cut(s)	17
Psp5II	RGGWCCY	2 cut(s)	163, 812
Psp6I	CCWGG	2 cut(s)	426, 815
PspFI	CCCAGC	1 cut(s)	265
PspGI	CCWGG	2 cut(s)	426, 815
PspN4I	GGNNCC	4 cut(s)	470, 511, 813, 814
PspPI	GGNCC	4 cut(s)	55, 121, 163, 812
PspPPI	RGGWCCY	2 cut(s)	163, 812
PstNI	CAGNNNCTG	1 cut(s)	389
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	3 cut(s)	32, 240, 384
Sau3AI	GATC	3 cut(s)	339, 765, 802
Sau96I	GGNCC	4 cut(s)	55, 121, 163, 812
ScrFI	CCNGG	3 cut(s)	48, 428, 817
SduI	GDGCHC	3 cut(s)	17, 324, 471
SfaNI	GCATC	3 cut(s)	207, 505, 649
SfcI	CTRYAG	1 cut(s)	514
SinI	GGWCC	3 cut(s)	121, 163, 812
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	306, 746
SsiI	CCGC	4 cut(s)	174, 240, 303, 820
SspMI	CTAG	4 cut(s)	35, 92, 330, 836
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	3 cut(s)	46, 426, 815
StyI	CCWWGG	2 cut(s)	193, 315
TaaI	ACNGT	2 cut(s)	121, 793
TaqI	TCGA	1 cut(s)	571
TasI	AATT	2 cut(s)	306, 746
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	4 cut(s)	255, 526, 546, 788
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	2 cut(s)	31, 383
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	3 cut(s)	489, 669, 701
TspRI	CASTG	4 cut(s)	255, 526, 546, 788
VpaK11BI	GGWCC	3 cut(s)	121, 163, 812
XceI	RCATGY	3 cut(s)	29, 496, 739
XcmI	CCANNNNNNNNNTGG	2 cut(s)	191, 343
XspI	CTAG	4 cut(s)	35, 92, 330, 836
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.