RchiOBHm_Chr2g0102291

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003264
Physical Location & Seq
Reverse (-)
13712874 .. 13714874
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47674

Sequence Viewer

Length: 1449 bp
ATGTCGGTGATGAGCTCAAAACCACATGCGCTGCTAGTCCCAAGCCCCGGCATGGGCCACCTCATCTCCTTGTTGGAGGTCGCCACCTGCCTAGCCACACATCACAACTTCCATGCCACGGTCCTCGTCGTTTCATCCAACACCTCTCCTGCTCTATCACAGGTCATCCAATCCGCCAAGTCCCGTAAGCTCCTTGGCATCATTGAGCTCCCAGCACCCTCCGGCCACGACACCAACGCCGCCGGTTCAGTTTTCACACACCTCCCAGCCATCATGCGTGATGTCCGACCATCTCTCCAATCCGCAATTTCGGCCATGGAGCGCAAGCCTAGCGCCATGATCGTTGATCTTTTCGGCACTGCAGCACTCACCGTGGCAGAAGAGTTCCGTATGCTCAAGTATGTAACAGTAGCCTCTGCTTGGACGCTAAGTTTGCTTTTGTATGCGCCAATCCTGGATAAGCAGATAGAAGGAGAATATCTGGATCAAAAGGAATTGTTAAACATCCCGGGTTGCAAGCCGGTTCGACCTGAAGATGTGGTGAAGCCGATGATGAATAGGAAGGATCGGGAATACGAATCCTTCATAAGAATTGGAAAAGAGATTACTTCAGTGAGTGATGGAATCTTGATCAACACATGGGAGGATCTGGAACCGACTTGTCTTGAAGCTATGAGGGAGCACCCGGACTGGAAGCAGATAACTAAGGTTCCGCTGTACACTATCGGTCCCATGGTTAGACTGGCAGGGCAGTCCGGTGGTGGTGGTCCGAGGAATGAGTTGTTGGATTGGCTGGATAAGCAACCAAGGGAGTCTGTGCTCTATATTTCATTTGGCAGTGGTGGGGTTCTTTCGGCTGAACAGATCACAGAGATGGCTTGGGGTTTAGAGCTTAGTAAGCAGAGGTTTATATGGGTGGTGCAGCCACCAAGCAAAGGAGGTGCTCAAGGCAATGACATTTCAGAGTATTTGCCTGAGGGATTCATGGCTCGGACTCATGACAAGGGTCTAGTGGTCACCACTTGGGCTCCTCAGTCGGAAATCTTGACACATGCAGCCGTTGGAGGGTTCCTATCGCACTGCGGTTGGAACTCAGCGCTGGAGAGTATACTGAATGGCTTGCCAATGATCGCATGGCCACTATACGCGGAGCAGAAAATGGTTGCTACACTGCTGGTGGAGGAGCTAAAGGTGGCGATTCGACCTAAAGTGTTGCCAACAAAAGCACTAGCAGGGAGGGAGGAGATTGAGATGTTGGTGAGGAAGATTACGGAGCAGAAAGACGGAGATGCAATGAGAGCAAGAGCTAAAGAACTGAAAGCAAGTGGGGAAAAAGCTCTCTGTGTGGGTGGATCTTCTTTCAACATGCTGTCTGAATTGTCAAGGCTATGCAAGATCAATACCGAACAGCAGTGCCGGACAGTAGGGACTGATCAAATTCTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

482

Amino Acids

52.81

Weight (kDa)

6.3

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 270 - 391 1.8e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 1108
AccII CGCG 1 cut(s) 1148
AciI CCGC 6 cut(s) 174, 240, 303, 713, 1083, 1148
AclWI GGATC 4 cut(s) 492, 573, 654, 1360
AcoI YGGCCR 3 cut(s) 223, 312, 1136
AcsI RAATTY 1 cut(s) 1437
AcuI CTGAAG 2 cut(s) 552, 594
AfaI GTAC 1 cut(s) 719
AfeI AGCGCT 1 cut(s) 1098
AfiI CCNNNNNNNGG 7 cut(s) 47, 52, 53, 118, 420, 935, 1065
AgsI TTSAA 2 cut(s) 668, 1363
AjnI CCWGG 1 cut(s) 453
AjuI GAANNNNNNNTTGG 2 cut(s) 767, 799
AluBI AGCT 8 cut(s) 15, 190, 208, 671, 892, 1186, 1307, 1337
AluI AGCT 8 cut(s) 15, 190, 208, 671, 892, 1186, 1307, 1337
Alw21I GWGCWC 5 cut(s) 17, 210, 684, 822, 946
AlwI GGATC 4 cut(s) 492, 573, 654, 1360
Ama87I CYCGRG 1 cut(s) 508
Aor51HI AGCGCT 1 cut(s) 1098
AoxI GGCC 4 cut(s) 55, 223, 312, 1136
ApeKI GCWGC 4 cut(s) 31, 362, 922, 1055
ApoI RAATTY 1 cut(s) 1437
ArsI GACNNNNNNTTYG 2 cut(s) 415, 447
AspLEI GCGC 5 cut(s) 31, 324, 335, 448, 1099
AspS9I GGNCC 4 cut(s) 55, 121, 728, 767
AsuC2I CCSGG 4 cut(s) 48, 509, 510, 686
AsuHPI GGTGA 5 cut(s) 19, 361, 553, 1009, 1270
AvaI CYCGRG 1 cut(s) 508
AvaII GGWCC 3 cut(s) 121, 728, 767
AxyI CCTNAGG 1 cut(s) 975
BalI TGGCCA 1 cut(s) 1138
BanII GRGCYC 3 cut(s) 17, 210, 1030
Bbv12I GWGCWC 5 cut(s) 17, 210, 684, 822, 946
BbvI GCAGC 4 cut(s) 18, 374, 934, 1067
BccI CCATC 4 cut(s) 278, 298, 614, 868
BceAI ACGGC 1 cut(s) 1043
BciT130I CCWGG 1 cut(s) 455
BclI TGATCA 2 cut(s) 630, 1432
BcnI CCSGG 4 cut(s) 48, 509, 510, 686
BfaI CTAG 5 cut(s) 35, 92, 330, 1010, 1229
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 2 cut(s) 336, 1100
BfuAI ACCTGC 1 cut(s) 95
BisI GCNGC 5 cut(s) 32, 240, 363, 923, 1056
BlsI GCNGC 5 cut(s) 33, 241, 364, 924, 1057
Bme1390I CCNGG 5 cut(s) 48, 455, 509, 510, 686
Bme18I GGWCC 3 cut(s) 121, 728, 767
BmeT110I CYCGRG 1 cut(s) 508
BmgT120I GGNCC 4 cut(s) 55, 121, 728, 767
BmiI GGNNCC 5 cut(s) 654, 711, 730, 1029, 1070
BmrFI CCNGG 5 cut(s) 48, 455, 509, 510, 686
BmsI GCATC 2 cut(s) 207, 1279
BoxI GACNNNNGTC 1 cut(s) 1005
BpmI CTGGAG 1 cut(s) 1121
BpuEI CTTGAG 2 cut(s) 380, 930
BpuMI CCSGG 4 cut(s) 48, 509, 510, 686
BsaJI CCNNGG 9 cut(s) 46, 117, 193, 315, 372, 508, 732, 770, 806
BsaWI WCCGGW 1 cut(s) 755
BsaXI ACNNNNNCTCC 6 cut(s) 50, 80, 279, 309, 1012, 1042
Bsc4I CCNNNNNNNGG 7 cut(s) 47, 52, 53, 118, 420, 935, 1065
Bse118I RCCGGY 2 cut(s) 242, 520
Bse1I ACTGG 2 cut(s) 695, 747
Bse21I CCTNAGG 1 cut(s) 975
Bse3DI GCAATG 2 cut(s) 958, 1299
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 9 cut(s) 46, 117, 193, 315, 372, 508, 732, 770, 806
BseGI GGATG 3 cut(s) 134, 165, 504
BseLI CCNNNNNNNGG 7 cut(s) 47, 52, 53, 118, 420, 935, 1065
BseMI GCAATG 2 cut(s) 958, 1299
BseMII CTCAG 3 cut(s) 966, 1046, 1107
BseNI ACTGG 2 cut(s) 695, 747
BseRI GAGGAG 3 cut(s) 1020, 1196, 1256
BseXI GCAGC 4 cut(s) 18, 374, 934, 1067
BseYI CCCAGC 2 cut(s) 211, 265
BsgI GTGCAG 1 cut(s) 941
Bsh1236I CGCG 1 cut(s) 1148
BshFI GGCC 4 cut(s) 57, 225, 314, 1138
BsiHKAI GWGCWC 5 cut(s) 17, 210, 684, 822, 946
BsiHKCI CYCGRG 1 cut(s) 508
BsiSI CCGG 8 cut(s) 48, 222, 243, 509, 521, 686, 756, 1417
BslFI GGGAC 4 cut(s) 23, 166, 714, 1441
BslI CCNNNNNNNGG 7 cut(s) 47, 52, 53, 118, 420, 935, 1065
BsmFI GGGAC 4 cut(s) 23, 166, 714, 1441
BsnI GGCC 4 cut(s) 57, 225, 314, 1138
BsoBI CYCGRG 1 cut(s) 508
Bsp1286I GDGCHC 6 cut(s) 17, 210, 684, 822, 946, 1030
Bsp1407I TGTACA 1 cut(s) 717
Bsp19I CCATGG 2 cut(s) 315, 732
BspACI CCGC 6 cut(s) 174, 240, 303, 713, 1083, 1148
BspANI GGCC 4 cut(s) 57, 225, 314, 1138
BspCNI CTCAG 3 cut(s) 967, 1045, 1106
BspFNI CGCG 1 cut(s) 1148
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 5 cut(s) 654, 711, 730, 1029, 1070
BspMAI CTGCAG 1 cut(s) 364
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 4 cut(s) 492, 573, 654, 1360
BsrDI GCAATG 2 cut(s) 958, 1299
BsrFI RCCGGY 2 cut(s) 242, 520
BsrGI TGTACA 1 cut(s) 717
BsrI ACTGG 2 cut(s) 695, 747
BssAI RCCGGY 2 cut(s) 242, 520
BssECI CCNNGG 9 cut(s) 46, 117, 193, 315, 372, 508, 732, 770, 806
BssNAI GTATAC 1 cut(s) 1109
BssT1I CCWWGG 4 cut(s) 193, 315, 732, 806
Bst1107I GTATAC 1 cut(s) 1109
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 4 cut(s) 121, 373, 409, 1423
Bst6I CTCTTC 1 cut(s) 375
BstAUI TGTACA 1 cut(s) 717
BstC8I GCNNGC 3 cut(s) 326, 518, 1121
BstDEI CTNAG 6 cut(s) 428, 705, 893, 975, 1032, 1093
BstDSI CCRYGG 4 cut(s) 117, 315, 372, 732
BstEII GGTNACC 1 cut(s) 1015
BstF5I GGATG 3 cut(s) 134, 165, 504
BstFNI CGCG 1 cut(s) 1148
BstH2I RGCGCY 2 cut(s) 336, 1100
BstHHI GCGC 5 cut(s) 31, 324, 335, 448, 1099
BstMWI GCNNNNNNNGC 6 cut(s) 311, 330, 433, 799, 898, 1298
BstNI CCWGG 1 cut(s) 455
BstNSI RCATGY 3 cut(s) 29, 1055, 1369
BstPAI GACNNNNGTC 1 cut(s) 1005
BstPI GGTNACC 1 cut(s) 1015
BstSCI CCNGG 5 cut(s) 46, 453, 507, 508, 684
BstSFI CTRYAG 1 cut(s) 360
BstUI CGCG 1 cut(s) 1148
BstV1I GCAGC 4 cut(s) 18, 374, 934, 1067
BstX2I RGATCY 2 cut(s) 646, 1352
BstYI RGATCY 2 cut(s) 646, 1352
BstZ17I GTATAC 1 cut(s) 1109
Bsu36I CCTNAGG 1 cut(s) 975
BsuRI GGCC 4 cut(s) 57, 225, 314, 1138
BtgI CCRYGG 4 cut(s) 117, 315, 372, 732
BtsCI GGATG 3 cut(s) 134, 165, 504
BtsI GCAGTG 5 cut(s) 357, 844, 1078, 1169, 1418
BtsIMutI CAGTG 6 cut(s) 357, 618, 844, 1078, 1169, 1418
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 3 cut(s) 326, 518, 1121
CciI TCATGA 1 cut(s) 997
CfoI GCGC 5 cut(s) 31, 324, 335, 448, 1099
Cfr10I RCCGGY 2 cut(s) 242, 520
Cfr13I GGNCC 4 cut(s) 55, 121, 728, 767
Cfr9I CCCGGG 1 cut(s) 508
CseI GACGC 1 cut(s) 433
Csp6I GTAC 1 cut(s) 718
CviQI GTAC 1 cut(s) 718
DdeI CTNAG 6 cut(s) 428, 705, 893, 975, 1032, 1093
EaeI YGGCCR 3 cut(s) 223, 312, 1136
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
EciI GGCGGA 1 cut(s) 163
Ecl136II GAGCTC 2 cut(s) 15, 208
Eco130I CCWWGG 4 cut(s) 193, 315, 732, 806
Eco24I GRGCYC 3 cut(s) 17, 210, 1030
Eco47I GGWCC 3 cut(s) 121, 728, 767
Eco47III AGCGCT 1 cut(s) 1098
Eco53kI GAGCTC 2 cut(s) 15, 208
Eco57I CTGAAG 2 cut(s) 552, 594
Eco81I CCTNAGG 1 cut(s) 975
Eco88I CYCGRG 1 cut(s) 508
Eco91I GGTNACC 1 cut(s) 1015
EcoICRI GAGCTC 2 cut(s) 15, 208
EcoO65I GGTNACC 1 cut(s) 1015
EcoRII CCWGG 1 cut(s) 453
EcoT14I CCWWGG 4 cut(s) 193, 315, 732, 806
EcoT38I GRGCYC 3 cut(s) 17, 210, 1030
ErhI CCWWGG 4 cut(s) 193, 315, 732, 806
FaqI GGGAC 4 cut(s) 23, 166, 714, 1441
FbaI TGATCA 2 cut(s) 630, 1432
FblI GTMKAC 1 cut(s) 1108
Fnu4HI GCNGC 5 cut(s) 32, 240, 363, 923, 1056
FokI GGATG 3 cut(s) 121, 152, 491
FriOI GRGCYC 3 cut(s) 17, 210, 1030
Fsp4HI GCNGC 5 cut(s) 32, 240, 363, 923, 1056
FspBI CTAG 5 cut(s) 35, 92, 330, 1010, 1229
GlaI GCGC 5 cut(s) 30, 323, 334, 447, 1098
GluI GCNGC 5 cut(s) 32, 240, 363, 923, 1056
GsaI CCCAGC 2 cut(s) 215, 269
GsuI CTGGAG 1 cut(s) 1121
HaeII RGCGCY 2 cut(s) 336, 1100
HaeIII GGCC 4 cut(s) 57, 225, 314, 1138
HapII CCGG 8 cut(s) 48, 222, 243, 509, 521, 686, 756, 1417
HgaI GACGC 1 cut(s) 433
HhaI GCGC 5 cut(s) 31, 324, 335, 448, 1099
Hin6I GCGC 5 cut(s) 29, 322, 333, 446, 1097
HinP1I GCGC 5 cut(s) 29, 322, 333, 446, 1097
HinfI GANTC 6 cut(s) 578, 624, 812, 981, 994, 1198
HpaII CCGG 8 cut(s) 48, 222, 243, 509, 521, 686, 756, 1417
HphI GGTGA 5 cut(s) 19, 361, 553, 1009, 1270
Hpy166II GTNNAC 2 cut(s) 720, 1109
Hpy188I TCNGA 6 cut(s) 287, 771, 964, 993, 1039, 1375
Hpy188III TCNNGA 7 cut(s) 482, 569, 628, 650, 665, 998, 1045
Hpy8I GTNNAC 2 cut(s) 720, 1109
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 3 cut(s) 464, 556, 592
HpyCH4III ACNGT 4 cut(s) 121, 373, 409, 1423
HpyCH4V TGCA 6 cut(s) 362, 516, 922, 1055, 1292, 1392
HpyF10VI GCNNNNNNNGC 6 cut(s) 311, 330, 433, 799, 898, 1298
HpyF3I CTNAG 6 cut(s) 428, 705, 893, 975, 1032, 1093
HspAI GCGC 5 cut(s) 29, 322, 333, 446, 1097
Ksp22I TGATCA 2 cut(s) 630, 1432
LmnI GCTCC 8 cut(s) 195, 213, 319, 679, 1033, 1150, 1183, 1273
Lsp1109I GCAGC 4 cut(s) 18, 374, 934, 1067
LweI GCATC 2 cut(s) 207, 1279
MaeI CTAG 5 cut(s) 35, 92, 330, 1010, 1229
MaeIII GTNAC 2 cut(s) 403, 1015
MboII GAAGA 4 cut(s) 392, 545, 1276, 1347
MflI RGATCY 2 cut(s) 646, 1352
MhlI GDGCHC 6 cut(s) 17, 210, 684, 822, 946, 1030
MlsI TGGCCA 1 cut(s) 1138
MluCI AATT 5 cut(s) 306, 494, 591, 1376, 1437
MluNI TGGCCA 1 cut(s) 1138
MlyI GAGTC 2 cut(s) 821, 988
MmeI TCCRAC 7 cut(s) 54, 162, 310, 765, 1017, 1042, 1067
Mox20I TGGCCA 1 cut(s) 1138
MscI TGGCCA 1 cut(s) 1138
MseI TTAA 1 cut(s) 500
MslI CAYNNNNRTG 1 cut(s) 872
Msp20I TGGCCA 1 cut(s) 1138
MspA1I CMGCKG 1 cut(s) 715
MspI CCGG 8 cut(s) 48, 222, 243, 509, 521, 686, 756, 1417
MspR9I CCNGG 5 cut(s) 48, 455, 509, 510, 686
MvaI CCWGG 1 cut(s) 455
MvnI CGCG 1 cut(s) 1148
MwoI GCNNNNNNNGC 6 cut(s) 311, 330, 433, 799, 898, 1298
NciI CCSGG 4 cut(s) 48, 509, 510, 686
NcoI CCATGG 2 cut(s) 315, 732
NlaIV GGNNCC 5 cut(s) 654, 711, 730, 1029, 1070
NmuCI GTSAC 1 cut(s) 1015
NspI RCATGY 3 cut(s) 29, 1055, 1369
PagI TCATGA 1 cut(s) 997
PaqCI CACCTGC 1 cut(s) 95
PfeI GAWTC 4 cut(s) 578, 624, 981, 1198
PfoI TCCNGGA 1 cut(s) 453
PkrI GCNGC 5 cut(s) 33, 241, 364, 924, 1057
PleI GAGTC 2 cut(s) 820, 988
PpsI GAGTC 2 cut(s) 820, 988
PshAI GACNNNNGTC 1 cut(s) 1005
Psp124BI GAGCTC 2 cut(s) 17, 210
Psp6I CCWGG 1 cut(s) 453
PspEI GGTNACC 1 cut(s) 1015
PspFI CCCAGC 2 cut(s) 211, 265
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 5 cut(s) 654, 711, 730, 1029, 1070
PspPI GGNCC 4 cut(s) 55, 121, 728, 767
PstI CTGCAG 1 cut(s) 364
PsuI RGATCY 2 cut(s) 646, 1352
RsaI GTAC 1 cut(s) 719
RsaNI GTAC 1 cut(s) 718
RseI CAYNNNNRTG 1 cut(s) 872
SacI GAGCTC 2 cut(s) 17, 210
SaqAI TTAA 1 cut(s) 500
SatI GCNGC 5 cut(s) 32, 240, 363, 923, 1056
Sau96I GGNCC 4 cut(s) 55, 121, 728, 767
SchI GAGTC 2 cut(s) 821, 988
ScrFI CCNGG 5 cut(s) 48, 455, 509, 510, 686
SduI GDGCHC 6 cut(s) 17, 210, 684, 822, 946, 1030
SfaNI GCATC 2 cut(s) 207, 1279
SfcI CTRYAG 1 cut(s) 360
SinI GGWCC 3 cut(s) 121, 728, 767
SmaI CCCGGG 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 872
SmlI CTYRAG 2 cut(s) 395, 945
SmoI CTYRAG 2 cut(s) 395, 945
Sse9I AATT 5 cut(s) 306, 494, 591, 1376, 1437
SsiI CCGC 6 cut(s) 174, 240, 303, 713, 1083, 1148
SspMI CTAG 5 cut(s) 35, 92, 330, 1010, 1229
SstI GAGCTC 2 cut(s) 17, 210
StyD4I CCNGG 5 cut(s) 46, 453, 507, 508, 684
StyI CCWWGG 4 cut(s) 193, 315, 732, 806
TaaI ACNGT 4 cut(s) 121, 373, 409, 1423
TaqI TCGA 2 cut(s) 526, 1201
TaqII GACCGA 1 cut(s) 716
TasI AATT 5 cut(s) 306, 494, 591, 1376, 1437
TatI WGTACW 1 cut(s) 717
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 4 cut(s) 578, 624, 981, 1198
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TscAI CASTG 6 cut(s) 364, 618, 844, 1085, 1176, 1418
TseFI GTSAC 1 cut(s) 1015
TseI GCWGC 4 cut(s) 31, 362, 922, 1055
Tsp45I GTSAC 1 cut(s) 1015
TspDTI ATGAA 5 cut(s) 123, 569, 574, 819, 973
TspGWI ACGGA 3 cut(s) 377, 1286, 1299
TspMI CCCGGG 1 cut(s) 508
TspRI CASTG 6 cut(s) 364, 618, 844, 1085, 1176, 1418
VpaK11BI GGWCC 3 cut(s) 121, 728, 767
XapI RAATTY 1 cut(s) 1437
XceI RCATGY 3 cut(s) 29, 1055, 1369
XcmI CCANNNNNNNNNTGG 2 cut(s) 739, 1131
XmaI CCCGGG 1 cut(s) 508
XmiI GTMKAC 1 cut(s) 1108
XspI CTAG 5 cut(s) 35, 92, 330, 1010, 1229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.