Rw5G030430

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003264
Physical Location & Seq
Reverse (-)
48276833 .. 48278269
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030430.1

Sequence Viewer

Length: 1437 bp
ATGAGTGCAAAAGCACATGCGTTGCTAGTCCCAAGCCCCGGCATGGGCCACCTCATCCCCTTAATGGAGCTCGCCAGCTCCCTGGTCACCCACCACAACTGCCACGCCACACTCGTCGTCGTTTCATCCAACACCTCTCCGGCACAATCGCAACTCATCCGATCGGCCAAGACCCAGAAGCTCTACGACATAGTTGAGCTCCCAGCACCCTCCGGCCACGACTCCAACGCCGCCGGCTCAGTCTTCACGCACCTCTCCGCCATCATGCTCGATACCCGATCATCTCTCCGGTCTGCAATCTCGGCCATGGAGCTCAAACCCGCCGCCATGATCGTCGATCTTTTCAGCACTGCAGTCCTCACTGTTGCACAAGAGTTCCACATGCTCAAGTACGTAACTCTAGTCTCCTGTGCCTGGCCACTAACCTTGCTTCTATATGCGCCAATTCTAGATAAACAGATAGATGGAGAGTATCTGGATCGCAAAGAGCTGCTGGAGATCCCGGGTTGCAAGCCGGTTCGACCTGAAGATGTGGTGAAGCCGATGATGAATAGGAAGGATCGTGAATACGAGTCCTTCTTAAGAATTGGGAAGGAGATTACTTCAATGAGTGATGGCATCTTGATCAATACATGGGAGGATCTGGAGCCCAACTGCCTTAAGGCTATGAGAGAGCACCCGGAGTGGAAGAAGATAGTTAGGGTTCCGCTGTACACTATCGGCCCCATGGTTAGACTGGCAGGGCAGTCCGGTGGTGGTCCGAGGAGTGAGCTGTTGGATTGGCTGGATAAGCAACCTAGTGAGTCTGTGCTTTACATATCGTTTGGGAGCGGTGGGGTTCTTTCGGCTGAACAGATCACAGAGATGGCTTGGGGTTTAGAGCTTAGTAAGCAGAGGTTTATATGGGTGGTGCAGCCACCAAGCAAAGGAGGTGCTGAAGGCAATGACATTTCGGAGTATTTGCCTGAGGGGTTCATGGCCCGGACTCAGGAAATGGGTGTGGTGGTCACCACTTGGGCTCCTCAGTCGGAAATCTTGGCTCATTCGTCGGTGGGAGGGTTTCTCTCGCACTGCGGTTGGAACTCGGCGCTGGAGAGTATACTGAATGGTGTGCCAATGATCGCATGGCCGCTATATGCAGAGCAGAAAATGGTTGCTACACTGCTGGTGGAGGAGCTCAAGGTGGCAATTCGACCTAAAGTTTTGCCAACAAAAGCAGTAGCAGGGAGGGAGGAGATTGAGATGTTGGTGAGGAAGATTCTGGAGCAGAAAGAAGGAGATGCAATGAGGGCAAGAGCTATAGAACTGAAAGCAAGTGGGGAAGAAGCTGTGAGTGTGGGCGGGTCTTCTTTCAATGTGCTGTCTGAATTGTCAAGGCTATGCAAGATCAATACCGAACAGCAATGCCAGAAAGTTGACACTGAAAAACTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

478

Amino Acids

52.53

Weight (kDa)

5.68

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 267 - 388 2.1e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 831
AccI GTMKAC 1 cut(s) 1099
AciI CCGC 9 cut(s) 231, 258, 321, 324, 707, 831, 1074, 1130, 1341
AclWI GGATC 4 cut(s) 486, 493, 567, 648
AcoI YGGCCR 5 cut(s) 165, 214, 303, 416, 1127
AcuI CTGAAG 2 cut(s) 546, 957
AfaI GTAC 2 cut(s) 392, 713
AfiI CCNNNNNNNGG 7 cut(s) 38, 43, 44, 64, 414, 926, 988
AflII CTTAAG 2 cut(s) 580, 659
AgsI TTSAA 2 cut(s) 606, 1354
AjnI CCWGG 2 cut(s) 81, 413
Alw21I GWGCWC 5 cut(s) 72, 201, 315, 678, 1179
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 4 cut(s) 486, 493, 567, 648
Ama87I CYCGRG 1 cut(s) 502
AoxI GGCC 8 cut(s) 46, 165, 214, 303, 416, 721, 978, 1127
ApeKI GCWGC 2 cut(s) 490, 913
AspLEI GCGC 2 cut(s) 442, 1090
AspS9I GGNCC 4 cut(s) 46, 722, 758, 979
AsuC2I CCSGG 5 cut(s) 39, 503, 504, 680, 982
AsuHPI GGTGA 4 cut(s) 79, 547, 1000, 1261
AvaI CYCGRG 1 cut(s) 502
AvaII GGWCC 1 cut(s) 758
AxyI CCTNAGG 1 cut(s) 966
BalI TGGCCA 1 cut(s) 418
BanII GRGCYC 6 cut(s) 72, 201, 315, 651, 1021, 1179
BbsI GAAGAC 2 cut(s) 235, 1338
Bbv12I GWGCWC 5 cut(s) 72, 201, 315, 678, 1179
BbvI GCAGC 2 cut(s) 477, 925
BccI CCATC 4 cut(s) 269, 458, 608, 859
BciT130I CCWGG 2 cut(s) 83, 415
BclI TGATCA 1 cut(s) 624
BcnI CCSGG 5 cut(s) 39, 503, 504, 680, 982
BcoDI GTCTC 1 cut(s) 409
BfaI CTAG 4 cut(s) 26, 401, 449, 798
BfmI CTRYAG 2 cut(s) 351, 1299
BfoI RGCGCY 1 cut(s) 1091
BfrI CTTAAG 2 cut(s) 580, 659
BisI GCNGC 5 cut(s) 231, 324, 491, 914, 1130
BlsI GCNGC 5 cut(s) 232, 325, 492, 915, 1131
Bme1390I CCNGG 7 cut(s) 39, 83, 415, 503, 504, 680, 982
Bme18I GGWCC 1 cut(s) 758
BmeT110I CYCGRG 1 cut(s) 502
BmgT120I GGNCC 4 cut(s) 46, 722, 758, 979
BmiI GGNNCC 4 cut(s) 648, 705, 724, 1020
BmrFI CCNGG 7 cut(s) 39, 83, 415, 503, 504, 680, 982
BmsI GCATC 2 cut(s) 627, 1270
BpiI GAAGAC 2 cut(s) 235, 1338
BplI GAGNNNNNCTC 2 cut(s) 1047, 1079
BpmI CTGGAG 4 cut(s) 515, 665, 1112, 1283
BpuEI CTTGAG 2 cut(s) 371, 1163
BpuMI CCSGG 5 cut(s) 39, 503, 504, 680, 982
BsaAI YACGTR 1 cut(s) 394
BsaJI CCNNGG 6 cut(s) 37, 81, 306, 502, 726, 761
BsaWI WCCGGW 2 cut(s) 288, 749
BsaXI ACNNNNNCTCC 2 cut(s) 1003, 1033
Bsc4I CCNNNNNNNGG 7 cut(s) 38, 43, 44, 64, 414, 926, 988
Bse118I RCCGGY 2 cut(s) 233, 514
Bse1I ACTGG 2 cut(s) 741, 1434
Bse21I CCTNAGG 1 cut(s) 966
Bse3DI GCAATG 3 cut(s) 949, 1290, 1409
BseBI CCWGG 2 cut(s) 83, 415
BseDI CCNNGG 6 cut(s) 37, 81, 306, 502, 726, 761
BseGI GGATG 3 cut(s) 54, 125, 156
BseLI CCNNNNNNNGG 7 cut(s) 38, 43, 44, 64, 414, 926, 988
BseMI GCAATG 3 cut(s) 949, 1290, 1409
BseMII CTCAG 4 cut(s) 252, 957, 1001, 1037
BseNI ACTGG 2 cut(s) 741, 1434
BseRI GAGGAG 4 cut(s) 778, 1011, 1187, 1247
BseXI GCAGC 2 cut(s) 477, 925
BseYI CCCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 932
Bsh1285I CGRYCG 1 cut(s) 164
BshFI GGCC 8 cut(s) 48, 167, 216, 305, 418, 723, 980, 1129
BsiEI CGRYCG 1 cut(s) 164
BsiHKAI GWGCWC 5 cut(s) 72, 201, 315, 678, 1179
BsiHKCI CYCGRG 1 cut(s) 502
BslFI GGGAC 1 cut(s) 14
BslI CCNNNNNNNGG 7 cut(s) 38, 43, 44, 64, 414, 926, 988
BsmAI GTCTC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 14
BsnI GGCC 8 cut(s) 48, 167, 216, 305, 418, 723, 980, 1129
BsoBI CYCGRG 1 cut(s) 502
Bsp1286I GDGCHC 7 cut(s) 72, 201, 315, 651, 678, 1021, 1179
Bsp1407I TGTACA 1 cut(s) 711
Bsp19I CCATGG 2 cut(s) 306, 726
BspACI CCGC 9 cut(s) 231, 258, 321, 324, 707, 831, 1074, 1130, 1341
BspANI GGCC 8 cut(s) 48, 167, 216, 305, 418, 723, 980, 1129
BspCNI CTCAG 4 cut(s) 251, 958, 1000, 1036
BspLI GGNNCC 4 cut(s) 648, 705, 724, 1020
BspMAI CTGCAG 1 cut(s) 355
BspPI GGATC 4 cut(s) 486, 493, 567, 648
BspTI CTTAAG 2 cut(s) 580, 659
BsrBI CCGCTC 1 cut(s) 831
BsrDI GCAATG 3 cut(s) 949, 1290, 1409
BsrFI RCCGGY 2 cut(s) 233, 514
BsrGI TGTACA 1 cut(s) 711
BsrI ACTGG 2 cut(s) 741, 1434
BssAI RCCGGY 2 cut(s) 233, 514
BssECI CCNNGG 6 cut(s) 37, 81, 306, 502, 726, 761
BssNAI GTATAC 1 cut(s) 1100
BssT1I CCWWGG 2 cut(s) 306, 726
Bst1107I GTATAC 1 cut(s) 1100
Bst2UI CCWGG 2 cut(s) 83, 415
Bst4CI ACNGT 1 cut(s) 364
BstAFI CTTAAG 2 cut(s) 580, 659
BstAUI TGTACA 1 cut(s) 711
BstBAI YACGTR 1 cut(s) 394
BstC8I GCNNGC 4 cut(s) 72, 76, 235, 512
BstDEI CTNAG 5 cut(s) 238, 884, 966, 987, 1023
BstDSI CCRYGG 2 cut(s) 306, 726
BstEII GGTNACC 2 cut(s) 85, 1006
BstF5I GGATG 3 cut(s) 54, 125, 156
BstH2I RGCGCY 1 cut(s) 1091
BstHHI GCGC 2 cut(s) 442, 1090
BstMAI GTCTC 1 cut(s) 409
BstMCI CGRYCG 1 cut(s) 164
BstMWI GCNNNNNNNGC 4 cut(s) 302, 790, 889, 1289
BstNI CCWGG 2 cut(s) 83, 415
BstNSI RCATGY 2 cut(s) 20, 385
BstPI GGTNACC 2 cut(s) 85, 1006
BstSCI CCNGG 7 cut(s) 37, 81, 413, 501, 502, 678, 980
BstSFI CTRYAG 2 cut(s) 351, 1299
BstSNI TACGTA 1 cut(s) 394
BstV1I GCAGC 2 cut(s) 477, 925
BstV2I GAAGAC 2 cut(s) 235, 1338
BstX2I RGATCY 2 cut(s) 498, 640
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 2 cut(s) 498, 640
BstZ17I GTATAC 1 cut(s) 1100
Bsu36I CCTNAGG 1 cut(s) 966
BsuRI GGCC 8 cut(s) 48, 167, 216, 305, 418, 723, 980, 1129
BtgI CCRYGG 2 cut(s) 306, 726
BtsCI GGATG 3 cut(s) 54, 125, 156
BtsI GCAGTG 3 cut(s) 348, 1069, 1160
BtsIMutI CAGTG 5 cut(s) 348, 360, 1069, 1160, 1419
Cac8I GCNNGC 4 cut(s) 72, 76, 235, 512
CfoI GCGC 2 cut(s) 442, 1090
Cfr10I RCCGGY 2 cut(s) 233, 514
Cfr13I GGNCC 4 cut(s) 46, 722, 758, 979
Cfr9I CCCGGG 1 cut(s) 502
Csp6I GTAC 2 cut(s) 391, 712
CspCI CAANNNNNGTGG 2 cut(s) 408, 443
CviQI GTAC 2 cut(s) 391, 712
DdeI CTNAG 5 cut(s) 238, 884, 966, 987, 1023
EaeI YGGCCR 5 cut(s) 165, 214, 303, 416, 1127
EciI GGCGGA 1 cut(s) 247
Ecl136II GAGCTC 4 cut(s) 70, 199, 313, 1177
Eco105I TACGTA 1 cut(s) 394
Eco130I CCWWGG 2 cut(s) 306, 726
Eco24I GRGCYC 6 cut(s) 72, 201, 315, 651, 1021, 1179
Eco47I GGWCC 1 cut(s) 758
Eco53kI GAGCTC 4 cut(s) 70, 199, 313, 1177
Eco57I CTGAAG 2 cut(s) 546, 957
Eco81I CCTNAGG 1 cut(s) 966
Eco88I CYCGRG 1 cut(s) 502
Eco91I GGTNACC 2 cut(s) 85, 1006
EcoICRI GAGCTC 4 cut(s) 70, 199, 313, 1177
EcoO65I GGTNACC 2 cut(s) 85, 1006
EcoRII CCWGG 2 cut(s) 81, 413
EcoT14I CCWWGG 2 cut(s) 306, 726
EcoT38I GRGCYC 6 cut(s) 72, 201, 315, 651, 1021, 1179
ErhI CCWWGG 2 cut(s) 306, 726
FaqI GGGAC 1 cut(s) 14
FauI CCCGC 2 cut(s) 328, 1334
FbaI TGATCA 1 cut(s) 624
FblI GTMKAC 1 cut(s) 1099
Fnu4HI GCNGC 5 cut(s) 231, 324, 491, 914, 1130
FokI GGATG 3 cut(s) 41, 112, 143
FriOI GRGCYC 6 cut(s) 72, 201, 315, 651, 1021, 1179
Fsp4HI GCNGC 5 cut(s) 231, 324, 491, 914, 1130
FspBI CTAG 4 cut(s) 26, 401, 449, 798
GlaI GCGC 2 cut(s) 441, 1089
GluI GCNGC 5 cut(s) 231, 324, 491, 914, 1130
GsaI CCCAGC 1 cut(s) 206
GsuI CTGGAG 4 cut(s) 515, 665, 1112, 1283
HaeII RGCGCY 1 cut(s) 1091
HaeIII GGCC 8 cut(s) 48, 167, 216, 305, 418, 723, 980, 1129
HhaI GCGC 2 cut(s) 442, 1090
Hin6I GCGC 2 cut(s) 440, 1088
HinP1I GCGC 2 cut(s) 440, 1088
HincII GTYRAC 1 cut(s) 1417
HindII GTYRAC 1 cut(s) 1417
HinfI GANTC 5 cut(s) 221, 572, 803, 985, 1258
HphI GGTGA 4 cut(s) 79, 547, 1000, 1261
Hpy166II GTNNAC 3 cut(s) 714, 1100, 1417
Hpy188I TCNGA 5 cut(s) 161, 762, 955, 1030, 1366
Hpy188III TCNNGA 7 cut(s) 449, 476, 563, 622, 644, 989, 1262
Hpy8I GTNNAC 3 cut(s) 714, 1100, 1417
Hpy99I CGWCG 4 cut(s) 119, 122, 338, 1051
HpyAV CCTTC 5 cut(s) 550, 586, 586, 932, 1268
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 9 cut(s) 8, 296, 353, 368, 510, 913, 1139, 1283, 1383
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 790, 889, 1289
HpyF3I CTNAG 5 cut(s) 238, 884, 966, 987, 1023
HpySE526I ACGT 1 cut(s) 393
HspAI GCGC 2 cut(s) 440, 1088
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 624
LmnI GCTCC 9 cut(s) 67, 83, 204, 310, 646, 828, 1024, 1174, 1264
Lsp1109I GCAGC 2 cut(s) 477, 925
LweI GCATC 2 cut(s) 627, 1270
MaeI CTAG 4 cut(s) 26, 401, 449, 798
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 3 cut(s) 85, 394, 1006
MbiI CCGCTC 1 cut(s) 831
MboII GAAGA 7 cut(s) 235, 539, 700, 703, 1267, 1334, 1338
MflI RGATCY 2 cut(s) 498, 640
MhlI GDGCHC 7 cut(s) 72, 201, 315, 651, 678, 1021, 1179
MlsI TGGCCA 1 cut(s) 418
MluCI AATT 4 cut(s) 444, 585, 1188, 1367
MluNI TGGCCA 1 cut(s) 418
MlyI GAGTC 4 cut(s) 215, 581, 812, 979
MmeI TCCRAC 5 cut(s) 153, 249, 756, 1008, 1058
Mox20I TGGCCA 1 cut(s) 418
MroNI GCCGGC 1 cut(s) 233
MscI TGGCCA 1 cut(s) 418
MseI TTAA 4 cut(s) 62, 581, 660, 1435
MslI CAYNNNNRTG 1 cut(s) 863
Msp20I TGGCCA 1 cut(s) 418
MspA1I CMGCKG 1 cut(s) 709
MspCI CTTAAG 2 cut(s) 580, 659
MspR9I CCNGG 7 cut(s) 39, 83, 415, 503, 504, 680, 982
MvaI CCWGG 2 cut(s) 83, 415
MwoI GCNNNNNNNGC 4 cut(s) 302, 790, 889, 1289
NaeI GCCGGC 1 cut(s) 235
NciI CCSGG 5 cut(s) 39, 503, 504, 680, 982
NcoI CCATGG 2 cut(s) 306, 726
NgoMIV GCCGGC 1 cut(s) 233
NlaIV GGNNCC 4 cut(s) 648, 705, 724, 1020
NmeAIII GCCGAG 2 cut(s) 281, 1064
NmuCI GTSAC 2 cut(s) 85, 1006
NspI RCATGY 2 cut(s) 20, 385
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdiI GCCGGC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 1258
PkrI GCNGC 5 cut(s) 232, 325, 492, 915, 1131
Ple19I CGATCG 1 cut(s) 164
PleI GAGTC 4 cut(s) 215, 580, 811, 979
PpsI GAGTC 4 cut(s) 215, 580, 811, 979
Ppu21I YACGTR 1 cut(s) 394
Psp124BI GAGCTC 4 cut(s) 72, 201, 315, 1179
Psp6I CCWGG 2 cut(s) 81, 413
PspEI GGTNACC 2 cut(s) 85, 1006
PspFI CCCAGC 1 cut(s) 202
PspGI CCWGG 2 cut(s) 81, 413
PspN4I GGNNCC 4 cut(s) 648, 705, 724, 1020
PspPI GGNCC 4 cut(s) 46, 722, 758, 979
PstI CTGCAG 1 cut(s) 355
PsuI RGATCY 2 cut(s) 498, 640
PvuI CGATCG 1 cut(s) 164
RsaI GTAC 2 cut(s) 392, 713
RsaNI GTAC 2 cut(s) 391, 712
RseI CAYNNNNRTG 1 cut(s) 863
SacI GAGCTC 4 cut(s) 72, 201, 315, 1179
SaqAI TTAA 4 cut(s) 62, 581, 660, 1435
SatI GCNGC 5 cut(s) 231, 324, 491, 914, 1130
Sau96I GGNCC 4 cut(s) 46, 722, 758, 979
SchI GAGTC 4 cut(s) 215, 581, 812, 979
ScrFI CCNGG 7 cut(s) 39, 83, 415, 503, 504, 680, 982
SduI GDGCHC 7 cut(s) 72, 201, 315, 651, 678, 1021, 1179
SfaNI GCATC 2 cut(s) 627, 1270
SfcI CTRYAG 2 cut(s) 351, 1299
SinI GGWCC 1 cut(s) 758
SmaI CCCGGG 1 cut(s) 504
SmiMI CAYNNNNRTG 1 cut(s) 863
SmlI CTYRAG 4 cut(s) 386, 580, 659, 1178
SmoI CTYRAG 4 cut(s) 386, 580, 659, 1178
SnaBI TACGTA 1 cut(s) 394
Sse9I AATT 4 cut(s) 444, 585, 1188, 1367
SsiI CCGC 9 cut(s) 231, 258, 321, 324, 707, 831, 1074, 1130, 1341
SspMI CTAG 4 cut(s) 26, 401, 449, 798
SstI GAGCTC 4 cut(s) 72, 201, 315, 1179
StyD4I CCNGG 7 cut(s) 37, 81, 413, 501, 502, 678, 980
StyI CCWWGG 2 cut(s) 306, 726
TaaI ACNGT 1 cut(s) 364
TaiI ACGT 1 cut(s) 396
TaqI TCGA 4 cut(s) 270, 336, 520, 1192
TasI AATT 4 cut(s) 444, 585, 1188, 1367
TatI WGTACW 1 cut(s) 711
TauI GCSGC 3 cut(s) 233, 326, 1132
TfiI GAWTC 1 cut(s) 1258
Tru1I TTAA 4 cut(s) 62, 581, 660, 1435
Tru9I TTAA 4 cut(s) 62, 581, 660, 1435
TscAI CASTG 5 cut(s) 355, 367, 1076, 1167, 1426
TseFI GTSAC 2 cut(s) 85, 1006
TseI GCWGC 2 cut(s) 490, 913
Tsp45I GTSAC 2 cut(s) 85, 1006
TspDTI ATGAA 3 cut(s) 114, 563, 964
TspMI CCCGGG 1 cut(s) 502
TspRI CASTG 5 cut(s) 355, 367, 1076, 1167, 1426
Vha464I CTTAAG 2 cut(s) 580, 659
VpaK11BI GGWCC 1 cut(s) 758
XbaI TCTAGA 1 cut(s) 448
XceI RCATGY 2 cut(s) 20, 385
XcmI CCANNNNNNNNNTGG 2 cut(s) 733, 1122
XmaI CCCGGG 1 cut(s) 502
XmiI GTMKAC 1 cut(s) 1099
XspI CTAG 4 cut(s) 26, 401, 449, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.