Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005055.1

Orthogroup ID

OG0003264

Physical Location & Seq

Genomic Coordinates Forward (+)

69910 .. 71271

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005055.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ctgcctagccacacatcacaacttccagccacggtcctcgtcgttttatccaacacctctcctgctctatcacaggtcatccaatcagccaagtcccgtaagctccttggcatcattgagctcccagcaccctccggccacgacaccaacgccgccggttcagttttcacacacctcccagccatcatgcgtgatgtccgaccatctctccaatccccaatttcggccatggagcacaagcctagcgccatgatcgttgatcatttcggcactgcagcactcaccgtggcagaagagttccgtatgctcaagtatgtaacagtaggctctgcttggacgctaagtttgcttttgtatgcgccaatcctggatacgcagatagaaggagaatatctggatcaaaaggaattgttaaacatcctgggttgcaagccggttcgacctgaagatgtggtgaagccgatgatgaataggaaggatcgggaatacgaatccttcataagaattggaaaagagattacttcagtgagtgatggaatcttgatcaacacatgggaggatctggagccgacttgtcttgaagctatgagggagcacccggactggaagcagataactaaggttccgctgtacactatcggtcccatggttagactggcagggcagtccggtggtggtggtccgaggagtgagttgttggattggctggataagcaaccaagggagtctgtgctctatatttcatttggcagtggtggggttctttcggctgaacagatcacagagatggcttggggtttagagcttagtaagcagaggtttatatgggtggtgcagccaccaagcaaaggaggtgctcaaggcaatgacatttcggagtatttgcctgaggggttcctggctcggactcatgacaagggtctagtggtcaccacttgggctcctcagtcggaaatcttggcacatgcatccgttggagggttcttatcgcactgcggttggaactcagcgctggagagtatactaaatcgcttgccaatgatcgcatggccactatacgcggagcagaaaatggttgctacactactggtggaggagctaaaggtggcgattcgacctaaagtgttgccaacaaaagcactagcagggagggaggagattgagatgttggtgaggaagattacggagcagaaagacggagatgcaatgagagcaagagctaaagaactgaaagcaagtggggaaaaagctctctgtgtgggtggatcttctttcaacacgctgtctgaattgtcaaggctatgcaagatcaataccgaacagcagtgccagacagtagggactgatcaaattctcgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

453

Amino Acids

49.74

Weight (kDa)

5.94

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13970 FvH4_1g13990 FvH4_1g14000
rosa_chinensis	RchiOBHm_Chr2g0102291 RchiOBHm_Chr5g0049051
rosa_laevigata	RLG00000017143 RLG00000027915 RLG00000029969 RLG00000034587
rosa_multiflora	Rmu_co8035894.1_g000001 Rmu_sc0000530.1_g000029 Rmu_sc0005055.1_g000021 Rmu_sc0008757.1_g000011 Rmu_sc0030874.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032820 Rroxscaffold_2G00140590 Rroxscaffold_2G00140600 Rroxscaffold_4G00297540 Rroxscaffold_4G00322380
rosa_rugosa	Rorug01G0070700 Rorug01G0070800 Rorug01G0266200 Rorug01G0266200 Rorug02G0106200 Rorug05G0242800
rosa_samantha	Rh1AG279800 Rh1BG069800 Rh1CG263900 Rh1DG091500 Rh2BG160200 Rh2BG160300 Rh2CG159800 Rh5AG322500 Rh5BG332800 Rh5CG357900
rosa_wichuraiana	Rw1G024870 Rw5G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1021
AccII	CGCG	1 cut(s)	1061
AciI	CCGC	4 cut(s)	153, 626, 996, 1061
AclWI	GGATC	4 cut(s)	405, 486, 567, 1273
AcoI	YGGCCR	3 cut(s)	136, 225, 1049
AcsI	RAATTY	1 cut(s)	1350
AcuI	CTGAAG	2 cut(s)	465, 507
AfaI	GTAC	1 cut(s)	632
AfeI	AGCGCT	1 cut(s)	1011
AfiI	CCNNNNNNNGG	3 cut(s)	223, 848, 978
AgsI	TTSAA	2 cut(s)	581, 1276
AjnI	CCWGG	3 cut(s)	366, 420, 897
AluBI	AGCT	7 cut(s)	103, 121, 584, 805, 1099, 1220, 1250
AluI	AGCT	7 cut(s)	103, 121, 584, 805, 1099, 1220, 1250
Alw21I	GWGCWC	5 cut(s)	123, 237, 597, 735, 859
AlwI	GGATC	4 cut(s)	405, 486, 567, 1273
Aor51HI	AGCGCT	1 cut(s)	1011
AoxI	GGCC	3 cut(s)	136, 225, 1049
ApeKI	GCWGC	2 cut(s)	275, 835
ApoI	RAATTY	1 cut(s)	1350
ArsI	GACNNNNNNTTYG	2 cut(s)	328, 360
AspLEI	GCGC	3 cut(s)	248, 361, 1012
AspS9I	GGNCC	3 cut(s)	34, 641, 680
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	4 cut(s)	274, 466, 922, 1183
AvaII	GGWCC	3 cut(s)	34, 641, 680
AxyI	CCTNAGG	1 cut(s)	888
BalI	TGGCCA	1 cut(s)	1051
BanII	GRGCYC	2 cut(s)	123, 943
Bbv12I	GWGCWC	5 cut(s)	123, 237, 597, 735, 859
BbvI	GCAGC	2 cut(s)	287, 847
BccI	CCATC	4 cut(s)	191, 211, 527, 781
BciT130I	CCWGG	3 cut(s)	368, 422, 899
BciVI	GTATCC	1 cut(s)	364
BclI	TGATCA	3 cut(s)	259, 543, 1345
BcnI	CCSGG	1 cut(s)	599
BfaI	CTAG	4 cut(s)	6, 243, 923, 1142
BfmI	CTRYAG	1 cut(s)	273
BfoI	RGCGCY	2 cut(s)	249, 1013
BfuI	GTATCC	1 cut(s)	364
BisI	GCNGC	3 cut(s)	153, 276, 836
BlsI	GCNGC	3 cut(s)	154, 277, 837
Bme1390I	CCNGG	4 cut(s)	368, 422, 599, 899
Bme18I	GGWCC	3 cut(s)	34, 641, 680
BmgT120I	GGNCC	3 cut(s)	34, 641, 680
BmiI	GGNNCC	5 cut(s)	567, 624, 643, 896, 942
BmrFI	CCNGG	4 cut(s)	368, 422, 599, 899
BmsI	GCATC	3 cut(s)	120, 977, 1192
BoxI	GACNNNNGTC	1 cut(s)	918
BpmI	CTGGAG	2 cut(s)	584, 1034
BpuEI	CTTGAG	2 cut(s)	293, 843
BpuMI	CCSGG	1 cut(s)	599
BsaJI	CCNNGG	8 cut(s)	30, 106, 228, 285, 421, 645, 683, 719
BsaWI	WCCGGW	1 cut(s)	668
BsaXI	ACNNNNNCTCC	4 cut(s)	192, 222, 925, 955
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 848, 978
Bse118I	RCCGGY	2 cut(s)	155, 433
Bse1I	ACTGG	3 cut(s)	608, 660, 1092
Bse21I	CCTNAGG	1 cut(s)	888
Bse3DI	GCAATG	2 cut(s)	871, 1212
BseBI	CCWGG	3 cut(s)	368, 422, 899
BseDI	CCNNGG	8 cut(s)	30, 106, 228, 285, 421, 645, 683, 719
BseGI	GGATG	3 cut(s)	78, 417, 968
BseLI	CCNNNNNNNGG	3 cut(s)	223, 848, 978
BseMI	GCAATG	2 cut(s)	871, 1212
BseMII	CTCAG	3 cut(s)	879, 959, 1020
BseNI	ACTGG	3 cut(s)	608, 660, 1092
BseRI	GAGGAG	4 cut(s)	700, 933, 1109, 1169
BseXI	GCAGC	2 cut(s)	287, 847
BseYI	CCCAGC	2 cut(s)	124, 178
BsgI	GTGCAG	1 cut(s)	854
Bsh1236I	CGCG	1 cut(s)	1061
BshFI	GGCC	3 cut(s)	138, 227, 1051
BsiHKAI	GWGCWC	5 cut(s)	123, 237, 597, 735, 859
BsiSI	CCGG	5 cut(s)	135, 156, 434, 599, 669
BslFI	GGGAC	3 cut(s)	79, 627, 1354
BslI	CCNNNNNNNGG	3 cut(s)	223, 848, 978
BsmFI	GGGAC	3 cut(s)	79, 627, 1354
BsnI	GGCC	3 cut(s)	138, 227, 1051
Bsp1286I	GDGCHC	6 cut(s)	123, 237, 597, 735, 859, 943
Bsp1407I	TGTACA	1 cut(s)	630
Bsp19I	CCATGG	2 cut(s)	228, 645
BspACI	CCGC	4 cut(s)	153, 626, 996, 1061
BspANI	GGCC	3 cut(s)	138, 227, 1051
BspCNI	CTCAG	3 cut(s)	880, 958, 1019
BspFNI	CGCG	1 cut(s)	1061
BspHI	TCATGA	1 cut(s)	910
BspLI	GGNNCC	5 cut(s)	567, 624, 643, 896, 942
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	4 cut(s)	405, 486, 567, 1273
BsrDI	GCAATG	2 cut(s)	871, 1212
BsrFI	RCCGGY	2 cut(s)	155, 433
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	3 cut(s)	608, 660, 1092
BssAI	RCCGGY	2 cut(s)	155, 433
BssECI	CCNNGG	8 cut(s)	30, 106, 228, 285, 421, 645, 683, 719
BssNAI	GTATAC	1 cut(s)	1022
BssT1I	CCWWGG	4 cut(s)	106, 228, 645, 719
Bst1107I	GTATAC	1 cut(s)	1022
Bst2UI	CCWGG	3 cut(s)	368, 422, 899
Bst4CI	ACNGT	4 cut(s)	34, 286, 322, 1336
Bst6I	CTCTTC	1 cut(s)	288
BstAUI	TGTACA	1 cut(s)	630
BstC8I	GCNNGC	2 cut(s)	431, 1034
BstDEI	CTNAG	6 cut(s)	341, 618, 806, 888, 945, 1006
BstDSI	CCRYGG	4 cut(s)	30, 228, 285, 645
BstEII	GGTNACC	1 cut(s)	928
BstF5I	GGATG	3 cut(s)	78, 417, 968
BstFNI	CGCG	1 cut(s)	1061
BstH2I	RGCGCY	2 cut(s)	249, 1013
BstHHI	GCGC	3 cut(s)	248, 361, 1012
BstMWI	GCNNNNNNNGC	4 cut(s)	346, 712, 811, 1211
BstNI	CCWGG	3 cut(s)	368, 422, 899
BstNSI	RCATGY	1 cut(s)	968
BstPAI	GACNNNNGTC	1 cut(s)	918
BstPI	GGTNACC	1 cut(s)	928
BstSCI	CCNGG	4 cut(s)	366, 420, 597, 897
BstSFI	CTRYAG	1 cut(s)	273
BstUI	CGCG	1 cut(s)	1061
BstV1I	GCAGC	2 cut(s)	287, 847
BstX2I	RGATCY	2 cut(s)	559, 1265
BstYI	RGATCY	2 cut(s)	559, 1265
BstZ17I	GTATAC	1 cut(s)	1022
Bsu36I	CCTNAGG	1 cut(s)	888
BsuI	GTATCC	1 cut(s)	364
BsuRI	GGCC	3 cut(s)	138, 227, 1051
BtgI	CCRYGG	4 cut(s)	30, 228, 285, 645
BtsCI	GGATG	3 cut(s)	78, 417, 968
BtsI	GCAGTG	4 cut(s)	270, 757, 991, 1331
BtsIMutI	CAGTG	5 cut(s)	270, 531, 757, 991, 1331
Cac8I	GCNNGC	2 cut(s)	431, 1034
CciI	TCATGA	1 cut(s)	910
CfoI	GCGC	3 cut(s)	248, 361, 1012
Cfr10I	RCCGGY	2 cut(s)	155, 433
Cfr13I	GGNCC	3 cut(s)	34, 641, 680
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	631
CviAII	CATG	8 cut(s)	187, 229, 250, 552, 646, 911, 965, 1047
CviQI	GTAC	1 cut(s)	631
DdeI	CTNAG	6 cut(s)	341, 618, 806, 888, 945, 1006
EaeI	YGGCCR	3 cut(s)	136, 225, 1049
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Ecl136II	GAGCTC	1 cut(s)	121
Eco130I	CCWWGG	4 cut(s)	106, 228, 645, 719
Eco24I	GRGCYC	2 cut(s)	123, 943
Eco47I	GGWCC	3 cut(s)	34, 641, 680
Eco47III	AGCGCT	1 cut(s)	1011
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	2 cut(s)	465, 507
Eco81I	CCTNAGG	1 cut(s)	888
Eco91I	GGTNACC	1 cut(s)	928
EcoICRI	GAGCTC	1 cut(s)	121
EcoO65I	GGTNACC	1 cut(s)	928
EcoRII	CCWGG	3 cut(s)	366, 420, 897
EcoT14I	CCWWGG	4 cut(s)	106, 228, 645, 719
EcoT22I	ATGCAT	1 cut(s)	970
EcoT38I	GRGCYC	2 cut(s)	123, 943
ErhI	CCWWGG	4 cut(s)	106, 228, 645, 719
FaeI	CATG	8 cut(s)	190, 232, 253, 555, 649, 914, 968, 1050
FaqI	GGGAC	3 cut(s)	79, 627, 1354
FatI	CATG	8 cut(s)	186, 228, 249, 551, 645, 910, 964, 1046
FbaI	TGATCA	3 cut(s)	259, 543, 1345
FblI	GTMKAC	1 cut(s)	1021
Fnu4HI	GCNGC	3 cut(s)	153, 276, 836
FokI	GGATG	3 cut(s)	65, 404, 955
FriOI	GRGCYC	2 cut(s)	123, 943
Fsp4HI	GCNGC	3 cut(s)	153, 276, 836
FspBI	CTAG	4 cut(s)	6, 243, 923, 1142
GlaI	GCGC	3 cut(s)	247, 360, 1011
GluI	GCNGC	3 cut(s)	153, 276, 836
GsaI	CCCAGC	2 cut(s)	128, 182
GsuI	CTGGAG	2 cut(s)	584, 1034
HaeII	RGCGCY	2 cut(s)	249, 1013
HaeIII	GGCC	3 cut(s)	138, 227, 1051
HapII	CCGG	5 cut(s)	135, 156, 434, 599, 669
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	3 cut(s)	248, 361, 1012
Hin1II	CATG	8 cut(s)	190, 232, 253, 555, 649, 914, 968, 1050
Hin6I	GCGC	3 cut(s)	246, 359, 1010
HinP1I	GCGC	3 cut(s)	246, 359, 1010
HinfI	GANTC	5 cut(s)	491, 537, 725, 907, 1111
HpaII	CCGG	5 cut(s)	135, 156, 434, 599, 669
HphI	GGTGA	4 cut(s)	274, 466, 922, 1183
Hpy166II	GTNNAC	2 cut(s)	633, 1022
Hpy188I	TCNGA	6 cut(s)	200, 684, 877, 906, 952, 1288
Hpy188III	TCNNGA	6 cut(s)	395, 482, 541, 563, 578, 911
Hpy8I	GTNNAC	2 cut(s)	633, 1022
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	3 cut(s)	377, 469, 505
HpyCH4III	ACNGT	4 cut(s)	34, 286, 322, 1336
HpyCH4V	TGCA	6 cut(s)	275, 429, 835, 968, 1205, 1305
HpyF10VI	GCNNNNNNNGC	4 cut(s)	346, 712, 811, 1211
HpyF3I	CTNAG	6 cut(s)	341, 618, 806, 888, 945, 1006
Hsp92II	CATG	8 cut(s)	190, 232, 253, 555, 649, 914, 968, 1050
HspAI	GCGC	3 cut(s)	246, 359, 1010
Ksp22I	TGATCA	3 cut(s)	259, 543, 1345
LmnI	GCTCC	9 cut(s)	108, 126, 232, 565, 592, 946, 1063, 1096, 1186
Lsp1109I	GCAGC	2 cut(s)	287, 847
LweI	GCATC	3 cut(s)	120, 977, 1192
MaeI	CTAG	4 cut(s)	6, 243, 923, 1142
MaeIII	GTNAC	2 cut(s)	316, 928
MboII	GAAGA	4 cut(s)	305, 458, 1189, 1260
MflI	RGATCY	2 cut(s)	559, 1265
MhlI	GDGCHC	6 cut(s)	123, 237, 597, 735, 859, 943
MlsI	TGGCCA	1 cut(s)	1051
MluCI	AATT	5 cut(s)	219, 407, 504, 1289, 1350
MluNI	TGGCCA	1 cut(s)	1051
MlyI	GAGTC	2 cut(s)	734, 901
MmeI	TCCRAC	6 cut(s)	75, 223, 678, 930, 955, 980
Mox20I	TGGCCA	1 cut(s)	1051
Mph1103I	ATGCAT	1 cut(s)	970
MscI	TGGCCA	1 cut(s)	1051
MseI	TTAA	1 cut(s)	413
MslI	CAYNNNNRTG	1 cut(s)	785
Msp20I	TGGCCA	1 cut(s)	1051
MspA1I	CMGCKG	1 cut(s)	628
MspI	CCGG	5 cut(s)	135, 156, 434, 599, 669
MspR9I	CCNGG	4 cut(s)	368, 422, 599, 899
MvaI	CCWGG	3 cut(s)	368, 422, 899
MvnI	CGCG	1 cut(s)	1061
MwoI	GCNNNNNNNGC	4 cut(s)	346, 712, 811, 1211
NciI	CCSGG	1 cut(s)	599
NcoI	CCATGG	2 cut(s)	228, 645
NlaIII	CATG	8 cut(s)	190, 232, 253, 555, 649, 914, 968, 1050
NlaIV	GGNNCC	5 cut(s)	567, 624, 643, 896, 942
NmuCI	GTSAC	1 cut(s)	928
NsiI	ATGCAT	1 cut(s)	970
NspI	RCATGY	1 cut(s)	968
PagI	TCATGA	1 cut(s)	910
PfeI	GAWTC	3 cut(s)	491, 537, 1111
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	3 cut(s)	154, 277, 837
PleI	GAGTC	2 cut(s)	733, 901
PpsI	GAGTC	2 cut(s)	733, 901
PshAI	GACNNNNGTC	1 cut(s)	918
Psp124BI	GAGCTC	1 cut(s)	123
Psp6I	CCWGG	3 cut(s)	366, 420, 897
PspEI	GGTNACC	1 cut(s)	928
PspFI	CCCAGC	2 cut(s)	124, 178
PspGI	CCWGG	3 cut(s)	366, 420, 897
PspN4I	GGNNCC	5 cut(s)	567, 624, 643, 896, 942
PspPI	GGNCC	3 cut(s)	34, 641, 680
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	2 cut(s)	559, 1265
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
RseI	CAYNNNNRTG	1 cut(s)	785
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	3 cut(s)	153, 276, 836
Sau96I	GGNCC	3 cut(s)	34, 641, 680
SchI	GAGTC	2 cut(s)	734, 901
ScrFI	CCNGG	4 cut(s)	368, 422, 599, 899
SduI	GDGCHC	6 cut(s)	123, 237, 597, 735, 859, 943
SfaNI	GCATC	3 cut(s)	120, 977, 1192
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	3 cut(s)	34, 641, 680
SmiMI	CAYNNNNRTG	1 cut(s)	785
SmlI	CTYRAG	2 cut(s)	308, 858
SmoI	CTYRAG	2 cut(s)	308, 858
Sse9I	AATT	5 cut(s)	219, 407, 504, 1289, 1350
SsiI	CCGC	4 cut(s)	153, 626, 996, 1061
SspMI	CTAG	4 cut(s)	6, 243, 923, 1142
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	4 cut(s)	366, 420, 597, 897
StyI	CCWWGG	4 cut(s)	106, 228, 645, 719
TaaI	ACNGT	4 cut(s)	34, 286, 322, 1336
TaqI	TCGA	2 cut(s)	439, 1114
TaqII	GACCGA	1 cut(s)	629
TasI	AATT	5 cut(s)	219, 407, 504, 1289, 1350
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	3 cut(s)	491, 537, 1111
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TscAI	CASTG	5 cut(s)	277, 531, 757, 998, 1331
TseFI	GTSAC	1 cut(s)	928
TseI	GCWGC	2 cut(s)	275, 835
Tsp45I	GTSAC	1 cut(s)	928
TspDTI	ATGAA	3 cut(s)	482, 487, 732
TspGWI	ACGGA	4 cut(s)	290, 961, 1199, 1212
TspRI	CASTG	5 cut(s)	277, 531, 757, 998, 1331
VpaK11BI	GGWCC	3 cut(s)	34, 641, 680
XapI	RAATTY	1 cut(s)	1350
XceI	RCATGY	1 cut(s)	968
XcmI	CCANNNNNNNNNTGG	2 cut(s)	652, 1044
XmiI	GTMKAC	1 cut(s)	1021
XspI	CTAG	4 cut(s)	6, 243, 923, 1142
Zsp2I	ATGCAT	1 cut(s)	970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.