Rh5CG357900

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003264
Physical Location & Seq
Reverse (-)
42209461 .. 42211865
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG357900.1

Sequence Viewer

Length: 1443 bp
ATGAGCGCAAAAGCACATGCGTTGCTAGTCCCAAGCCCCGGCATGGGCCACCTCATCCCCTTAATGGAGCTCGCCAGCTCCCTGGTCACCCACCACAACTGCCACGCCACACTCGTCGTTGTCGTTTCATCCAACGCCACCTCTCCGGCACAATCCCAACTCATCCAATCCGCCAAGACCCAGAAGCTCTTCGACATAGTTGAGCTCCCAGCACCCTCCGGCCACGACTCCAACGCCGCCGGTTCAGTCTTCACGCACCTCTCCGCCATCATGCTCGATACCCGATCATCTCTCCGCTCTGCAATCTCCGCCATGGAGCTAAAACCCGCCGCCATGATCGTCGATCTTTTCAGCACTGCAGTCCTCACTGTTGCACAAGAATTCCACATGCTCAAGTATGTAACGCTAGTCTCCTGTGCTTGGCCACTAACCTTGCTTCTATATGCGCCAATTCTAGATAAACAGATAGATGGAGAGTATTTGGATCGCAAAGAGCTGCTGGAGATCCCGGGTTGCAAGCCGGTTCGACCTGAAGATGTGGTGAAGCCGATGATGAATAGGAAGGATCGTGAATACGAGTCCTTCTTACGAATTGGGAAAGAGATTACTTCAATGAGTGATGGAATCTTGATCAACACATGGGAGGATCTGGAGCCCAACTGTCTTAAGGCTATGAGAGAGCACCCGGAGTGGAAGAAGATAGTTAGGTTTCCGCTGTACACTATCGGTCCGATGGTTAGACTGGCAGGGCAGTCCGGTGGTGGTCCGAGGAGTGAGCTGTTGGATTGGCTGGATGAGCAACCTAGTGAGTCTCTGCTTTACATATCGTTTGGGAGCGGTGGGGTTCTTTCGGCTGAACAGATCACAGAGATGGCTTGGGGTTTAGAGCTTAGTAAGCAGAGGTTTATATGGGTGGTGCAGCCACCAAGCAAAGGAGGTGCTCAAGGCAATGACATTTCGGAGTATTTGCCTGAGGGGTTCATGGCTCGGACTCATGAAATGGGTGTGGTGGTCACCACTTGGGCTCCTCAGTCGGAAATCTTGGCTCATTCGTCGGTGGGAGGGTTTCTCTCGCACTGCGGTTGGAACTCGGCGCTGGAGAGTATACTGAATGGTGTGCCAATGATCGCATGGCCGCTATATGCAGAGCAGAAAATGGTTGCTACACTGCTGGTGGAGGAGCTCAAGGTGGCAATTCGACCTAAAGTTTTGCCAACAAAAGCAGTAGCAGGGAGGGAGGAGATTGAGATGTTGGTGAGGAAGATTATGGAGCAGAAAGAAGGAGATGCAATGAGGGCAAGAGCTAAAGAACTGAAAGCAAGTGGGGAAGAAGCTCTGAGTGTGAGCGGGTCTTCTTTCAATATGCTGTCTGAATTGTCAAGGCTATGCAAGATCAATACCGAACAGCAATGCCAGAAAGTTGACACTGAAAAACTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

480

Amino Acids

52.79

Weight (kDa)

5.73

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 270 - 390 8e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 297, 837, 1347
AccI GTMKAC 1 cut(s) 1105
AclWI GGATC 4 cut(s) 492, 499, 573, 654
AcoI YGGCCR 3 cut(s) 220, 422, 1133
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 1 cut(s) 719
AfiI CCNNNNNNNGG 6 cut(s) 38, 43, 44, 64, 420, 932
AflII CTTAAG 1 cut(s) 665
AgsI TTSAA 2 cut(s) 612, 1360
AjnI CCWGG 1 cut(s) 81
Alw21I GWGCWC 5 cut(s) 72, 207, 684, 943, 1185
Alw26I GTCTC 2 cut(s) 415, 816
AlwI GGATC 4 cut(s) 492, 499, 573, 654
Ama87I CYCGRG 1 cut(s) 508
AoxI GGCC 4 cut(s) 46, 220, 422, 1133
ApeKI GCWGC 2 cut(s) 496, 919
ApoI RAATTY 1 cut(s) 380
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 3 cut(s) 8, 448, 1096
AspS9I GGNCC 3 cut(s) 46, 728, 764
AsuC2I CCSGG 4 cut(s) 39, 509, 510, 686
AsuHPI GGTGA 4 cut(s) 79, 553, 1006, 1267
AvaI CYCGRG 1 cut(s) 508
AvaII GGWCC 2 cut(s) 728, 764
AxyI CCTNAGG 1 cut(s) 972
BalI TGGCCA 1 cut(s) 424
BanII GRGCYC 5 cut(s) 72, 207, 657, 1027, 1185
BbsI GAAGAC 2 cut(s) 241, 1344
Bbv12I GWGCWC 5 cut(s) 72, 207, 684, 943, 1185
BbvI GCAGC 2 cut(s) 483, 931
BccI CCATC 5 cut(s) 275, 464, 614, 727, 865
BciT130I CCWGG 1 cut(s) 83
BclI TGATCA 1 cut(s) 630
BcnI CCSGG 4 cut(s) 39, 509, 510, 686
BcoDI GTCTC 2 cut(s) 415, 816
BfaI CTAG 4 cut(s) 26, 407, 455, 804
BfmI CTRYAG 1 cut(s) 357
BfoI RGCGCY 1 cut(s) 1097
BfrI CTTAAG 1 cut(s) 665
BisI GCNGC 5 cut(s) 237, 330, 497, 920, 1136
BlsI GCNGC 5 cut(s) 238, 331, 498, 921, 1137
Bme1390I CCNGG 5 cut(s) 39, 83, 509, 510, 686
Bme18I GGWCC 2 cut(s) 728, 764
BmeT110I CYCGRG 1 cut(s) 508
BmgT120I GGNCC 3 cut(s) 46, 728, 764
BmiI GGNNCC 2 cut(s) 654, 1026
BmrFI CCNGG 5 cut(s) 39, 83, 509, 510, 686
BmsI GCATC 1 cut(s) 1276
BpiI GAAGAC 2 cut(s) 241, 1344
BplI GAGNNNNNCTC 2 cut(s) 1053, 1085
BpmI CTGGAG 3 cut(s) 521, 671, 1118
BpuEI CTTGAG 3 cut(s) 377, 927, 1169
BpuMI CCSGG 4 cut(s) 39, 509, 510, 686
BsaJI CCNNGG 5 cut(s) 37, 81, 312, 508, 767
BsaWI WCCGGW 1 cut(s) 755
BsaXI ACNNNNNCTCC 2 cut(s) 1009, 1039
Bsc4I CCNNNNNNNGG 6 cut(s) 38, 43, 44, 64, 420, 932
Bse118I RCCGGY 2 cut(s) 239, 520
Bse1I ACTGG 2 cut(s) 747, 1440
Bse21I CCTNAGG 1 cut(s) 972
Bse3DI GCAATG 3 cut(s) 955, 1296, 1415
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 5 cut(s) 37, 81, 312, 508, 767
BseGI GGATG 4 cut(s) 54, 128, 162, 799
BseLI CCNNNNNNNGG 6 cut(s) 38, 43, 44, 64, 420, 932
BseMI GCAATG 3 cut(s) 955, 1296, 1415
BseMII CTCAG 3 cut(s) 963, 1043, 1328
BseNI ACTGG 2 cut(s) 747, 1440
BseRI GAGGAG 4 cut(s) 784, 1017, 1193, 1253
BseXI GCAGC 2 cut(s) 483, 931
BseYI CCCAGC 1 cut(s) 208
BsgI GTGCAG 1 cut(s) 938
BshFI GGCC 4 cut(s) 48, 222, 424, 1135
BsiHKAI GWGCWC 5 cut(s) 72, 207, 684, 943, 1185
BsiHKCI CYCGRG 1 cut(s) 508
BsiSI CCGG 8 cut(s) 39, 146, 219, 240, 509, 521, 686, 756
BslFI GGGAC 1 cut(s) 14
BslI CCNNNNNNNGG 6 cut(s) 38, 43, 44, 64, 420, 932
BsmAI GTCTC 2 cut(s) 415, 816
BsmFI GGGAC 1 cut(s) 14
BsnI GGCC 4 cut(s) 48, 222, 424, 1135
BsoBI CYCGRG 1 cut(s) 508
Bsp1286I GDGCHC 7 cut(s) 72, 207, 657, 684, 943, 1027, 1185
Bsp1407I TGTACA 1 cut(s) 717
Bsp19I CCATGG 1 cut(s) 312
BspANI GGCC 4 cut(s) 48, 222, 424, 1135
BspCNI CTCAG 3 cut(s) 964, 1042, 1329
BspHI TCATGA 1 cut(s) 994
BspLI GGNNCC 2 cut(s) 654, 1026
BspMAI CTGCAG 1 cut(s) 361
BspPI GGATC 4 cut(s) 492, 499, 573, 654
BspQI GCTCTTC 1 cut(s) 194
BspTI CTTAAG 1 cut(s) 665
BsrBI CCGCTC 3 cut(s) 297, 837, 1347
BsrDI GCAATG 3 cut(s) 955, 1296, 1415
BsrFI RCCGGY 2 cut(s) 239, 520
BsrGI TGTACA 1 cut(s) 717
BsrI ACTGG 2 cut(s) 747, 1440
BssAI RCCGGY 2 cut(s) 239, 520
BssECI CCNNGG 5 cut(s) 37, 81, 312, 508, 767
BssNAI GTATAC 1 cut(s) 1106
BssT1I CCWWGG 1 cut(s) 312
Bst1107I GTATAC 1 cut(s) 1106
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 2 cut(s) 370, 662
Bst6I CTCTTC 1 cut(s) 194
BstAFI CTTAAG 1 cut(s) 665
BstAUI TGTACA 1 cut(s) 717
BstC8I GCNNGC 3 cut(s) 72, 76, 518
BstDEI CTNAG 4 cut(s) 890, 972, 1029, 1337
BstDSI CCRYGG 1 cut(s) 312
BstEII GGTNACC 2 cut(s) 85, 1012
BstF5I GGATG 4 cut(s) 54, 128, 162, 799
BstH2I RGCGCY 1 cut(s) 1097
BstHHI GCGC 3 cut(s) 8, 448, 1096
BstMAI GTCTC 2 cut(s) 415, 816
BstMWI GCNNNNNNNGC 4 cut(s) 308, 796, 895, 1295
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 2 cut(s) 20, 391
BstPI GGTNACC 2 cut(s) 85, 1012
BstSCI CCNGG 5 cut(s) 37, 81, 507, 508, 684
BstSFI CTRYAG 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 483, 931
BstV2I GAAGAC 2 cut(s) 241, 1344
BstX2I RGATCY 2 cut(s) 504, 646
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 2 cut(s) 504, 646
BstZ17I GTATAC 1 cut(s) 1106
Bsu36I CCTNAGG 1 cut(s) 972
BsuRI GGCC 4 cut(s) 48, 222, 424, 1135
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 4 cut(s) 54, 128, 162, 799
BtsI GCAGTG 3 cut(s) 354, 1075, 1166
BtsIMutI CAGTG 5 cut(s) 354, 366, 1075, 1166, 1425
Cac8I GCNNGC 3 cut(s) 72, 76, 518
CciI TCATGA 1 cut(s) 994
CfoI GCGC 3 cut(s) 8, 448, 1096
Cfr10I RCCGGY 2 cut(s) 239, 520
Cfr13I GGNCC 3 cut(s) 46, 728, 764
Cfr9I CCCGGG 1 cut(s) 508
CpoI CGGWCCG 1 cut(s) 728
Csp6I GTAC 1 cut(s) 718
CspCI CAANNNNNGTGG 2 cut(s) 414, 449
CspI CGGWCCG 1 cut(s) 728
CviQI GTAC 1 cut(s) 718
DdeI CTNAG 4 cut(s) 890, 972, 1029, 1337
EaeI YGGCCR 3 cut(s) 220, 422, 1133
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
EciI GGCGGA 3 cut(s) 160, 253, 298
Ecl136II GAGCTC 3 cut(s) 70, 205, 1183
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 5 cut(s) 72, 207, 657, 1027, 1185
Eco47I GGWCC 2 cut(s) 728, 764
Eco53kI GAGCTC 3 cut(s) 70, 205, 1183
Eco57I CTGAAG 1 cut(s) 552
Eco81I CCTNAGG 1 cut(s) 972
Eco88I CYCGRG 1 cut(s) 508
Eco91I GGTNACC 2 cut(s) 85, 1012
EcoICRI GAGCTC 3 cut(s) 70, 205, 1183
EcoO65I GGTNACC 2 cut(s) 85, 1012
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 5 cut(s) 72, 207, 657, 1027, 1185
ErhI CCWWGG 1 cut(s) 312
FaqI GGGAC 1 cut(s) 14
FauI CCCGC 2 cut(s) 334, 1340
FbaI TGATCA 1 cut(s) 630
FblI GTMKAC 1 cut(s) 1105
Fnu4HI GCNGC 5 cut(s) 237, 330, 497, 920, 1136
FokI GGATG 4 cut(s) 41, 115, 149, 806
FriOI GRGCYC 5 cut(s) 72, 207, 657, 1027, 1185
Fsp4HI GCNGC 5 cut(s) 237, 330, 497, 920, 1136
FspBI CTAG 4 cut(s) 26, 407, 455, 804
GlaI GCGC 3 cut(s) 7, 447, 1095
GluI GCNGC 5 cut(s) 237, 330, 497, 920, 1136
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 3 cut(s) 521, 671, 1118
HaeII RGCGCY 1 cut(s) 1097
HaeIII GGCC 4 cut(s) 48, 222, 424, 1135
HapII CCGG 8 cut(s) 39, 146, 219, 240, 509, 521, 686, 756
HhaI GCGC 3 cut(s) 8, 448, 1096
Hin6I GCGC 3 cut(s) 6, 446, 1094
HinP1I GCGC 3 cut(s) 6, 446, 1094
HincII GTYRAC 1 cut(s) 1423
HindII GTYRAC 1 cut(s) 1423
HinfI GANTC 5 cut(s) 227, 578, 624, 809, 991
HpaII CCGG 8 cut(s) 39, 146, 219, 240, 509, 521, 686, 756
HphI GGTGA 4 cut(s) 79, 553, 1006, 1267
Hpy166II GTNNAC 3 cut(s) 720, 1106, 1423
Hpy188I TCNGA 7 cut(s) 732, 768, 961, 990, 1036, 1338, 1372
Hpy188III TCNNGA 5 cut(s) 455, 569, 628, 650, 995
Hpy8I GTNNAC 3 cut(s) 720, 1106, 1423
Hpy99I CGWCG 3 cut(s) 119, 344, 1057
HpyAV CCTTC 3 cut(s) 556, 592, 1274
HpyCH4III ACNGT 2 cut(s) 370, 662
HpyCH4V TGCA 8 cut(s) 302, 359, 374, 516, 919, 1145, 1289, 1389
HpyF10VI GCNNNNNNNGC 4 cut(s) 308, 796, 895, 1295
HpyF3I CTNAG 4 cut(s) 890, 972, 1029, 1337
HspAI GCGC 3 cut(s) 6, 446, 1094
Ksp22I TGATCA 1 cut(s) 630
LguI GCTCTTC 1 cut(s) 194
LmnI GCTCC 9 cut(s) 67, 83, 210, 316, 652, 834, 1030, 1180, 1270
Lsp1109I GCAGC 2 cut(s) 483, 931
LweI GCATC 1 cut(s) 1276
MaeI CTAG 4 cut(s) 26, 407, 455, 804
MaeIII GTNAC 3 cut(s) 85, 400, 1012
MbiI CCGCTC 3 cut(s) 297, 837, 1347
MboII GAAGA 8 cut(s) 181, 241, 545, 706, 709, 1273, 1340, 1344
MflI RGATCY 2 cut(s) 504, 646
MhlI GDGCHC 7 cut(s) 72, 207, 657, 684, 943, 1027, 1185
MlsI TGGCCA 1 cut(s) 424
MluCI AATT 5 cut(s) 380, 450, 591, 1194, 1373
MluNI TGGCCA 1 cut(s) 424
MlyI GAGTC 4 cut(s) 221, 587, 818, 985
MmeI TCCRAC 5 cut(s) 156, 255, 762, 1014, 1064
Mox20I TGGCCA 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 188
MscI TGGCCA 1 cut(s) 424
MseI TTAA 3 cut(s) 62, 666, 1441
MslI CAYNNNNRTG 1 cut(s) 869
Msp20I TGGCCA 1 cut(s) 424
MspA1I CMGCKG 1 cut(s) 715
MspCI CTTAAG 1 cut(s) 665
MspI CCGG 8 cut(s) 39, 146, 219, 240, 509, 521, 686, 756
MspR9I CCNGG 5 cut(s) 39, 83, 509, 510, 686
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 4 cut(s) 308, 796, 895, 1295
NciI CCSGG 4 cut(s) 39, 509, 510, 686
NcoI CCATGG 1 cut(s) 312
NlaIV GGNNCC 2 cut(s) 654, 1026
NmeAIII GCCGAG 1 cut(s) 1070
NmuCI GTSAC 2 cut(s) 85, 1012
NspI RCATGY 2 cut(s) 20, 391
PagI TCATGA 1 cut(s) 994
PciSI GCTCTTC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 120
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 624
PkrI GCNGC 5 cut(s) 238, 331, 498, 921, 1137
PleI GAGTC 4 cut(s) 221, 586, 817, 985
PpsI GAGTC 4 cut(s) 221, 586, 817, 985
Psp124BI GAGCTC 3 cut(s) 72, 207, 1185
Psp6I CCWGG 1 cut(s) 81
PspEI GGTNACC 2 cut(s) 85, 1012
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 654, 1026
PspPI GGNCC 3 cut(s) 46, 728, 764
PstI CTGCAG 1 cut(s) 361
PsuI RGATCY 2 cut(s) 504, 646
RsaI GTAC 1 cut(s) 719
RsaNI GTAC 1 cut(s) 718
RseI CAYNNNNRTG 1 cut(s) 869
Rsr2I CGGWCCG 1 cut(s) 728
RsrII CGGWCCG 1 cut(s) 728
SacI GAGCTC 3 cut(s) 72, 207, 1185
SapI GCTCTTC 1 cut(s) 194
SaqAI TTAA 3 cut(s) 62, 666, 1441
SatI GCNGC 5 cut(s) 237, 330, 497, 920, 1136
Sau96I GGNCC 3 cut(s) 46, 728, 764
SchI GAGTC 4 cut(s) 221, 587, 818, 985
ScrFI CCNGG 5 cut(s) 39, 83, 509, 510, 686
SduI GDGCHC 7 cut(s) 72, 207, 657, 684, 943, 1027, 1185
SfaNI GCATC 1 cut(s) 1276
SfcI CTRYAG 1 cut(s) 357
SinI GGWCC 2 cut(s) 728, 764
SmaI CCCGGG 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 869
SmlI CTYRAG 4 cut(s) 392, 665, 942, 1184
SmoI CTYRAG 4 cut(s) 392, 665, 942, 1184
Sse9I AATT 5 cut(s) 380, 450, 591, 1194, 1373
SspMI CTAG 4 cut(s) 26, 407, 455, 804
SstI GAGCTC 3 cut(s) 72, 207, 1185
StyD4I CCNGG 5 cut(s) 37, 81, 507, 508, 684
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 370, 662
TaqI TCGA 5 cut(s) 192, 276, 342, 526, 1198
TaqII GACCGA 1 cut(s) 716
TasI AATT 5 cut(s) 380, 450, 591, 1194, 1373
TatI WGTACW 1 cut(s) 717
TauI GCSGC 3 cut(s) 239, 332, 1138
TfiI GAWTC 1 cut(s) 624
Tru1I TTAA 3 cut(s) 62, 666, 1441
Tru9I TTAA 3 cut(s) 62, 666, 1441
TscAI CASTG 5 cut(s) 361, 373, 1082, 1173, 1432
TseFI GTSAC 2 cut(s) 85, 1012
TseI GCWGC 2 cut(s) 496, 919
Tsp45I GTSAC 2 cut(s) 85, 1012
TspDTI ATGAA 4 cut(s) 117, 569, 970, 1011
TspMI CCCGGG 1 cut(s) 508
TspRI CASTG 5 cut(s) 361, 373, 1082, 1173, 1432
Vha464I CTTAAG 1 cut(s) 665
VpaK11BI GGWCC 2 cut(s) 728, 764
XapI RAATTY 1 cut(s) 380
XbaI TCTAGA 1 cut(s) 454
XceI RCATGY 2 cut(s) 20, 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 1128
XmaI CCCGGG 1 cut(s) 508
XmiI GTMKAC 1 cut(s) 1105
XmnI GAANNNNTTC 1 cut(s) 188
XspI CTAG 4 cut(s) 26, 407, 455, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.