Rorug05G0242800
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003264
Physical Location & Seq
Forward (+)
25998138 .. 26001793
3656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0242800.1

Sequence Viewer

Length: 546 bp
ATGAAACAACTTGGTCAGTGGGATAAACTTGATATTACTAGCGGAGAAGGTGAACTCCCTACAAGATTTGGTTCTGCAACTCTTAGGATACTTCTTTTACAGGATATAGCAGTCGTACCTCTCTTAGTCATACTTCTGGTGCTGGAAAGCCAGAACATAGCGGAGGACAGTATATGGCCAATGCTTTTGAAGGAGGGTTTAAAAGCTCTAGGTGGGCTGGGGCTTCTTTCTCTTGGAGGAAAATTAGTTCTTAGGCGAATTTTTGAGTTTGTGGTAGAAGCAAGGAGCTCAGAGGCATTTGTTGCCCTTTGCTTGCTGACGGTGGTGGGGACTTCACTTCTCACCCAGAAGTTGGGGTTCAGTGATACGTTTTATACGCAGATACTTTGTATAGGTTGGTCATGCTGGAATTTTCAGCCACACAGAAGTATTCTCTTGCATCTAATTCAACTTACAATGTGGAAGAGGCTGGTGATCTGTAAGGCAGAAATGGAGGAATGTATAGATTTGATAATGGAAGAATTAGAGAGAGTTTGTAAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

181

Amino Acids

20.35

Weight (kDa)

5.46

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 12 - 123 4.3e-12 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 352
AciI CCGC 2 cut(s) 42, 161
AcoI YGGCCR 1 cut(s) 176
AcsI RAATTY 2 cut(s) 258, 409
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 352
AgsI TTSAA 2 cut(s) 190, 449
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
AluBI AGCT 2 cut(s) 206, 288
AluI AGCT 2 cut(s) 206, 288
Alw21I GWGCWC 1 cut(s) 290
AoxI GGCC 1 cut(s) 176
ApoI RAATTY 2 cut(s) 258, 409
AsuHPI GGTGA 3 cut(s) 62, 334, 484
BalI TGGCCA 1 cut(s) 178
BanII GRGCYC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 290
BciVI GTATCC 1 cut(s) 81
BfaI CTAG 2 cut(s) 39, 209
BfuI GTATCC 1 cut(s) 81
BmsI GCATC 1 cut(s) 448
Bsc4I CCNNNNNNNGG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMII CTCAG 1 cut(s) 303
BseYI CCCAGC 1 cut(s) 217
BshFI GGCC 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 290
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 352
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 1 cut(s) 474
BspACI CCGC 2 cut(s) 42, 161
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 302
BssMI GATC 1 cut(s) 474
Bst4CI ACNGT 2 cut(s) 170, 322
Bst6I CTCTTC 1 cut(s) 458
BstAPI GCANNNNNTGC 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 4 cut(s) 83, 124, 251, 289
BstKTI GATC 1 cut(s) 477
BstMBI GATC 1 cut(s) 474
BstMWI GCNNNNNNNGC 1 cut(s) 302
BsuI GTATCC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 178
BtsIMutI CAGTG 2 cut(s) 23, 367
Cac8I GCNNGC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 116
CviAII CATG 1 cut(s) 402
CviJI RGCY 8 cut(s) 150, 178, 206, 217, 223, 288, 418, 469
CviKI_1 RGCY 8 cut(s) 150, 178, 206, 217, 223, 288, 418, 469
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 4 cut(s) 83, 124, 251, 289
DpnI GATC 1 cut(s) 476
DpnII GATC 1 cut(s) 474
DraI TTTAAA 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 458
Ecl136II GAGCTC 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 290
Eco53kI GAGCTC 1 cut(s) 288
EcoICRI GAGCTC 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 290
FaeI CATG 1 cut(s) 405
FaiI YATR 9 cut(s) 107, 131, 158, 173, 175, 375, 392, 403, 503
FaqI GGGAC 1 cut(s) 343
FatI CATG 1 cut(s) 401
FriOI GRGCYC 1 cut(s) 290
FspBI CTAG 2 cut(s) 39, 209
GsaI CCCAGC 1 cut(s) 221
HaeIII GGCC 1 cut(s) 178
Hin1II CATG 1 cut(s) 405
HphI GGTGA 3 cut(s) 62, 334, 484
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 292
Hpy8I GTNNAC 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 41, 184
HpyCH4III ACNGT 2 cut(s) 170, 322
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 2 cut(s) 77, 439
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 4 cut(s) 83, 124, 251, 289
HpySE526I ACGT 1 cut(s) 368
Hsp92II CATG 1 cut(s) 405
Kzo9I GATC 1 cut(s) 474
LmnI GCTCC 1 cut(s) 285
LpnPI CCDG 8 cut(s) 86, 122, 128, 164, 203, 359, 391, 455
LweI GCATC 1 cut(s) 448
MaeI CTAG 2 cut(s) 39, 209
MaeII ACGT 1 cut(s) 368
MalI GATC 1 cut(s) 476
MboI GATC 1 cut(s) 474
MboII GAAGA 2 cut(s) 475, 530
MhlI GDGCHC 1 cut(s) 290
MlsI TGGCCA 1 cut(s) 178
MluCI AATT 5 cut(s) 242, 258, 409, 444, 521
MluNI TGGCCA 1 cut(s) 178
MnlI CCTC 7 cut(s) 129, 157, 187, 230, 286, 459, 487
Mox20I TGGCCA 1 cut(s) 178
MscI TGGCCA 1 cut(s) 178
MseI TTAA 1 cut(s) 200
Msp20I TGGCCA 1 cut(s) 178
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeII GATC 1 cut(s) 474
NlaIII CATG 1 cut(s) 405
PflMI CCANNNNNTGG 1 cut(s) 352
Psp124BI GAGCTC 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 217
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SacI GAGCTC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 200
Sau3AI GATC 1 cut(s) 474
SduI GDGCHC 1 cut(s) 290
SetI ASST 7 cut(s) 52, 121, 208, 214, 290, 371, 397
SfaNI GCATC 1 cut(s) 448
Sse9I AATT 5 cut(s) 242, 258, 409, 444, 521
SsiI CCGC 2 cut(s) 42, 161
SspMI CTAG 2 cut(s) 39, 209
SstI GAGCTC 1 cut(s) 290
TaaI ACNGT 2 cut(s) 170, 322
TaiI ACGT 1 cut(s) 371
TasI AATT 5 cut(s) 242, 258, 409, 444, 521
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 2 cut(s) 23, 367
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 23, 367
Van91I CCANNNNNTGG 1 cut(s) 352
XapI RAATTY 2 cut(s) 258, 409
XspI CTAG 2 cut(s) 39, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.