Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003264

Physical Location & Seq

Genomic Coordinates Forward (+)

78850552 .. 78851357

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGTTCTGAACCTCAGATGCCCGCCCCATTGGGACATTGTGTGCCCAAACCTTATTCGCAGGAGCTTTCACACAGCTACCACTATGAGCTCAAAACCACATGCGCTGCTAGTCCCAAGCCCCGGCAGGGCCACCTCATCTCCTTGTTGGAGCTCGCCACCTGCCTAGCCACCCGTCACAACTTCCATGCCACGGTCCTCGTCGTTTCATCCAACACCTCTCCTGCACTATCACAGGTCATCCAATCCACCAAGTCCCAGAAGCTCCTTGGCATCATTGAGCTCCCAGCACCCTCCGGCCACGACACCAACGCCGCCGGTTCAGTGTTCACACACCTCCCAGCCATCATGCGTGATGTCCGACCATCTCTCCAATCCGCAATTTCGGCCATGCTGCACAAACCTAGCTCCATGATCGTTGATATTTTCGACACTGCAGCACTCACCGTGGCAGAAGAGTTCCGTATGCTCAAGTATGTAACAGTAGCCTCTGCTTGGACGCTAAGTTTGCTTTTGTATGCGCCAATCCTTGATAAGCAGATAGAAGGAGAATATCTGGATCAAAAGGAATTGTTAAACATCCCGGGTTGCAAGCCGGTTCGACCTGAAGATGTGGTGAAGCCGATGATGAATAGGAAGGATCGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

216

Amino Acids

23.75

Weight (kDa)

7.12

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13970 FvH4_1g13990 FvH4_1g14000
rosa_chinensis	RchiOBHm_Chr2g0102291 RchiOBHm_Chr5g0049051
rosa_laevigata	RLG00000017143 RLG00000027915 RLG00000029969 RLG00000034587
rosa_multiflora	Rmu_co8035894.1_g000001 Rmu_sc0000530.1_g000029 Rmu_sc0005055.1_g000021 Rmu_sc0008757.1_g000011 Rmu_sc0030874.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032820 Rroxscaffold_2G00140590 Rroxscaffold_2G00140600 Rroxscaffold_4G00297540 Rroxscaffold_4G00322380
rosa_rugosa	Rorug01G0070700 Rorug01G0070800 Rorug01G0266200 Rorug01G0266200 Rorug02G0106200 Rorug05G0242800
rosa_samantha	Rh1AG279800 Rh1BG069800 Rh1CG263900 Rh1DG091500 Rh2BG160200 Rh2BG160300 Rh2CG159800 Rh5AG322500 Rh5BG332800 Rh5CG357900
rosa_wichuraiana	Rw1G024870 Rw5G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	170
AciI	CCGC	3 cut(s)	24, 315, 378
AclWI	GGATC	2 cut(s)	567, 648
AcoI	YGGCCR	2 cut(s)	298, 387
AcuI	CTGAAG	1 cut(s)	627
AfiI	CCNNNNNNNGG	4 cut(s)	123, 128, 193, 495
AluBI	AGCT	7 cut(s)	67, 78, 91, 154, 265, 283, 408
AluI	AGCT	7 cut(s)	67, 78, 91, 154, 265, 283, 408
Alw21I	GWGCWC	3 cut(s)	93, 156, 285
AlwI	GGATC	2 cut(s)	567, 648
Ama87I	CYCGRG	1 cut(s)	583
AoxI	GGCC	3 cut(s)	130, 298, 387
ApeKI	GCWGC	3 cut(s)	107, 394, 437
ArsI	GACNNNNNNTTYG	2 cut(s)	490, 522
AspLEI	GCGC	2 cut(s)	107, 523
AspS9I	GGNCC	2 cut(s)	130, 196
AsuC2I	CCSGG	3 cut(s)	124, 584, 585
AsuHPI	GGTGA	2 cut(s)	436, 628
AvaI	CYCGRG	1 cut(s)	583
AvaII	GGWCC	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	48
BanII	GRGCYC	3 cut(s)	93, 156, 285
Bbv12I	GWGCWC	3 cut(s)	93, 156, 285
BbvI	GCAGC	3 cut(s)	94, 381, 449
BccI	CCATC	2 cut(s)	353, 373
BcnI	CCSGG	3 cut(s)	124, 584, 585
BfaI	CTAG	3 cut(s)	111, 167, 405
BfmI	CTRYAG	1 cut(s)	435
BfuAI	ACCTGC	1 cut(s)	170
BisI	GCNGC	4 cut(s)	108, 315, 395, 438
BlsI	GCNGC	4 cut(s)	109, 316, 396, 439
Bme1390I	CCNGG	3 cut(s)	124, 584, 585
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	583
BmgT120I	GGNCC	2 cut(s)	130, 196
BmrFI	CCNGG	3 cut(s)	124, 584, 585
BmsI	GCATC	2 cut(s)	9, 282
BpuEI	CTTGAG	1 cut(s)	455
BpuMI	CCSGG	3 cut(s)	124, 584, 585
BsaJI	CCNNGG	5 cut(s)	122, 192, 268, 447, 583
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 354, 384
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 128, 193, 495
Bse118I	RCCGGY	2 cut(s)	317, 595
BseDI	CCNNGG	5 cut(s)	122, 192, 268, 447, 583
BseGI	GGATG	3 cut(s)	209, 240, 579
BseLI	CCNNNNNNNGG	4 cut(s)	123, 128, 193, 495
BseMII	CTCAG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	94, 381, 449
BseYI	CCCAGC	2 cut(s)	286, 340
BsgI	GTGCAG	2 cut(s)	210, 380
BshFI	GGCC	3 cut(s)	132, 300, 389
BsiHKAI	GWGCWC	3 cut(s)	93, 156, 285
BsiHKCI	CYCGRG	1 cut(s)	583
BsiSI	CCGG	5 cut(s)	124, 297, 318, 584, 596
BslFI	GGGAC	3 cut(s)	48, 99, 241
BslI	CCNNNNNNNGG	4 cut(s)	123, 128, 193, 495
BsmFI	GGGAC	3 cut(s)	48, 99, 241
BsnI	GGCC	3 cut(s)	132, 300, 389
BsoBI	CYCGRG	1 cut(s)	583
Bsp1286I	GDGCHC	4 cut(s)	48, 93, 156, 285
Bsp143I	GATC	3 cut(s)	414, 559, 640
BspACI	CCGC	3 cut(s)	24, 315, 378
BspANI	GGCC	3 cut(s)	132, 300, 389
BspCNI	CTCAG	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	439
BspMI	ACCTGC	1 cut(s)	170
BspPI	GGATC	2 cut(s)	567, 648
BsrFI	RCCGGY	2 cut(s)	317, 595
BssAI	RCCGGY	2 cut(s)	317, 595
BssECI	CCNNGG	5 cut(s)	122, 192, 268, 447, 583
BssMI	GATC	3 cut(s)	414, 559, 640
BssT1I	CCWWGG	1 cut(s)	268
Bst4CI	ACNGT	3 cut(s)	196, 448, 484
Bst6I	CTCTTC	1 cut(s)	450
BstC8I	GCNNGC	3 cut(s)	24, 156, 593
BstDEI	CTNAG	2 cut(s)	15, 503
BstDSI	CCRYGG	2 cut(s)	192, 447
BstF5I	GGATG	3 cut(s)	209, 240, 579
BstHHI	GCGC	2 cut(s)	107, 523
BstKTI	GATC	3 cut(s)	417, 562, 643
BstMBI	GATC	3 cut(s)	414, 559, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 508
BstNSI	RCATGY	1 cut(s)	105
BstSCI	CCNGG	3 cut(s)	122, 582, 583
BstSFI	CTRYAG	1 cut(s)	435
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	94, 381, 449
BsuRI	GGCC	3 cut(s)	132, 300, 389
BtgI	CCRYGG	2 cut(s)	192, 447
BtsCI	GGATG	3 cut(s)	209, 240, 579
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	330, 432
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	3 cut(s)	24, 156, 593
CfoI	GCGC	2 cut(s)	107, 523
Cfr10I	RCCGGY	2 cut(s)	317, 595
Cfr13I	GGNCC	2 cut(s)	130, 196
Cfr9I	CCCGGG	1 cut(s)	583
CseI	GACGC	1 cut(s)	508
CviAII	CATG	5 cut(s)	102, 188, 349, 391, 412
DdeI	CTNAG	2 cut(s)	15, 503
DpnI	GATC	3 cut(s)	416, 561, 642
DpnII	GATC	3 cut(s)	414, 559, 640
EaeI	YGGCCR	2 cut(s)	298, 387
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Ecl136II	GAGCTC	3 cut(s)	91, 154, 283
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	3 cut(s)	93, 156, 285
Eco47I	GGWCC	1 cut(s)	196
Eco53kI	GAGCTC	3 cut(s)	91, 154, 283
Eco57I	CTGAAG	1 cut(s)	627
Eco88I	CYCGRG	1 cut(s)	583
EcoICRI	GAGCTC	3 cut(s)	91, 154, 283
EcoT14I	CCWWGG	1 cut(s)	268
EcoT38I	GRGCYC	3 cut(s)	93, 156, 285
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	5 cut(s)	105, 191, 352, 394, 415
FaiI	YATR	9 cut(s)	87, 103, 189, 350, 392, 413, 467, 477, 519
FaqI	GGGAC	3 cut(s)	48, 99, 241
FatI	CATG	5 cut(s)	101, 187, 348, 390, 411
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	4 cut(s)	108, 315, 395, 438
FokI	GGATG	3 cut(s)	196, 227, 566
FriOI	GRGCYC	3 cut(s)	93, 156, 285
Fsp4HI	GCNGC	4 cut(s)	108, 315, 395, 438
FspBI	CTAG	3 cut(s)	111, 167, 405
GlaI	GCGC	2 cut(s)	106, 522
GluI	GCNGC	4 cut(s)	108, 315, 395, 438
GsaI	CCCAGC	2 cut(s)	290, 344
HaeIII	GGCC	3 cut(s)	132, 300, 389
HapII	CCGG	5 cut(s)	124, 297, 318, 584, 596
HgaI	GACGC	1 cut(s)	508
HhaI	GCGC	2 cut(s)	107, 523
Hin1II	CATG	5 cut(s)	105, 191, 352, 394, 415
Hin6I	GCGC	2 cut(s)	105, 521
HinP1I	GCGC	2 cut(s)	105, 521
HpaII	CCGG	5 cut(s)	124, 297, 318, 584, 596
HphI	GGTGA	2 cut(s)	436, 628
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	3 cut(s)	10, 18, 362
Hpy188III	TCNNGA	2 cut(s)	557, 644
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	2 cut(s)	539, 631
HpyCH4III	ACNGT	3 cut(s)	196, 448, 484
HpyCH4V	TGCA	4 cut(s)	227, 397, 437, 591
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 508
HpyF3I	CTNAG	2 cut(s)	15, 503
Hsp92II	CATG	5 cut(s)	105, 191, 352, 394, 415
HspAI	GCGC	2 cut(s)	105, 521
Kzo9I	GATC	3 cut(s)	414, 559, 640
LmnI	GCTCC	5 cut(s)	64, 151, 270, 288, 413
Lsp1109I	GCAGC	3 cut(s)	94, 381, 449
LweI	GCATC	2 cut(s)	9, 282
MaeI	CTAG	3 cut(s)	111, 167, 405
MaeIII	GTNAC	2 cut(s)	176, 478
MalI	GATC	3 cut(s)	416, 561, 642
MboI	GATC	3 cut(s)	414, 559, 640
MboII	GAAGA	2 cut(s)	467, 620
MhlI	GDGCHC	4 cut(s)	48, 93, 156, 285
MluCI	AATT	2 cut(s)	381, 569
MmeI	TCCRAC	3 cut(s)	129, 237, 385
MnlI	CCTC	7 cut(s)	24, 146, 209, 229, 304, 347, 499
MseI	TTAA	1 cut(s)	575
MspI	CCGG	5 cut(s)	124, 297, 318, 584, 596
MspR9I	CCNGG	3 cut(s)	124, 584, 585
MwoI	GCNNNNNNNGC	2 cut(s)	386, 508
NciI	CCSGG	3 cut(s)	124, 584, 585
NdeII	GATC	3 cut(s)	414, 559, 640
NlaIII	CATG	5 cut(s)	105, 191, 352, 394, 415
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	105
PaqCI	CACCTGC	1 cut(s)	170
PkrI	GCNGC	4 cut(s)	109, 316, 396, 439
Psp124BI	GAGCTC	3 cut(s)	93, 156, 285
PspFI	CCCAGC	2 cut(s)	286, 340
PspPI	GGNCC	2 cut(s)	130, 196
PstI	CTGCAG	1 cut(s)	439
SacI	GAGCTC	3 cut(s)	93, 156, 285
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	4 cut(s)	108, 315, 395, 438
Sau3AI	GATC	3 cut(s)	414, 559, 640
Sau96I	GGNCC	2 cut(s)	130, 196
ScrFI	CCNGG	3 cut(s)	124, 584, 585
SduI	GDGCHC	4 cut(s)	48, 93, 156, 285
SfaNI	GCATC	2 cut(s)	9, 282
SfcI	CTRYAG	1 cut(s)	435
SinI	GGWCC	1 cut(s)	196
SmaI	CCCGGG	1 cut(s)	585
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	2 cut(s)	381, 569
SsiI	CCGC	3 cut(s)	24, 315, 378
SspMI	CTAG	3 cut(s)	111, 167, 405
SstI	GAGCTC	3 cut(s)	93, 156, 285
StyD4I	CCNGG	3 cut(s)	122, 582, 583
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	3 cut(s)	196, 448, 484
TaqI	TCGA	2 cut(s)	429, 601
TasI	AATT	2 cut(s)	381, 569
TauI	GCSGC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	2 cut(s)	330, 439
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	3 cut(s)	107, 394, 437
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	198, 644
TspGWI	ACGGA	1 cut(s)	452
TspMI	CCCGGG	1 cut(s)	583
TspRI	CASTG	2 cut(s)	330, 439
VpaK11BI	GGWCC	1 cut(s)	196
XceI	RCATGY	1 cut(s)	105
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266
XmaI	CCCGGG	1 cut(s)	583
XspI	CTAG	3 cut(s)	111, 167, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.