Rh1CG263900

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003264
Physical Location & Seq
Forward (+)
52818870 .. 52821176
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG263900.1

Sequence Viewer

Length: 1416 bp
ATGACTTCCACGGAGGACATGAGCTCAAAAGCATTTGTGCTGCTAGTACCCAGCCCCGGCATGGGACACCTCATCCCCTTCTTGGAGCTCGCCAATTGTCTCGTCGAGCAACACAATTTCCACGCCACAGTCGTCGTCATTTCATCCAACGCTTCTCCTGCACAATCCCAGGTCATCCAATCCGCCATGACCCCGAAACTTTTCGACATCATTGAGCTTCCACCACTAGACACCTCCGGCCAAGTCAACGCCGCTGGTTCAGTCTTCACACAGCTCCCGGCCATTATGCTTGATGCCCGTTCCTCTCTCCGGTCCGCCATCTCGGCCATGGAGTTCAAGCCGGCAGCCATGATCGTCGATCTTTTCGGCACCGCTGTTCTTCCCGTGGCCGATGAGTTCCACATGCTCAAGTATGTAAGAGTCTCGTGTGCTTGGCCCCTTGCCCTGCTTTTATACGCTCCTATTCTAGATAAGGAGGTGGAAGGAGAATACTTGGATCAAAAAGAACCGCTCAAGATCCCTGGTTGCAAGTCTGTTCGACCGGAAGATGTTGTTAAGCCCATGATGAACAGAAAAGATCCCGAATACGAGTCCTTCATACGTATTGGGGTAGAGATATGCGAGATGAGTGATGGGATTTTGGTCAACACTTGGGAAGATCTGGAGTCAATGAGTCTTAGACCCATGAGAGAGGATCCAGAGTGGAAGCAGATCCTTAAGGTTCCGGTCCATACTTTCGGTCCCATGATTAGGCCGGCAGGGCGCTCCACTCCGAGGAGCGAGGTGTTGGGTTGGCTGGACATGCAGCCCAATGCCTCTGTGATTTACATTTCTTTTGGGAGCGGTGGGGTTCTGTCGGCTGATCAAATTACCGAGATGGCTTGGGGTATAGAGCTTAGCACTCAGAGATTTATATGGGTAGTGCATCCACCAAGCAAAGATGGTGACAGAGGCAATGACATTTCAGACTACTTGCCTGAAGGGTTCATGGCTCGGACTCGTGACAAGGGTCTAGTGGTCACCACTTGGGCTCCTCAGGTGGAAATCTTGGCTCATTCATCAGTTGGAGGGTTCTTGTCACACTGTGGTTGGAACTCATCGCTGGAGAGTATACTGAATGGTGTGCCAATGATCGCATGGCCGCTCTATGCCGAGCAGAAAATGATTGCCACGTTTTTCGTGGAGGAGCTGAAGGTGGCGATTCGACCTAAAGTTCTGCCGGCAAAGAGGATAGTAAGGAGGGAGGAGATTGAGATGATGGTGAGGAAGATTGTGGAGGAGAAAGAAGGAGATGAAATGAGGGCAAGAGCTAAAGAGCTAAAAAAGAGTGGGGAAGCAGCTTTGAGTGAAGGTGGGTCTTCGTTCAAGACACTCTCTGCATTGGCAAAGCTCTGCCAGCACAACTCGCAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

471

Amino Acids

52.21

Weight (kDa)

5.45

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 271 - 391 1.3e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 368
AccBSI CCGCTC 3 cut(s) 511, 843, 1144
AccI GTMKAC 1 cut(s) 1111
AciI CCGC 7 cut(s) 183, 252, 315, 372, 509, 843, 1142
AclWI GGATC 6 cut(s) 504, 511, 572, 689, 702, 706
AcoI YGGCCR 5 cut(s) 238, 279, 324, 387, 1139
AcuI CTGAAG 2 cut(s) 999, 1211
AdeI CACNNNGTG 1 cut(s) 1085
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 7 cut(s) 56, 61, 62, 82, 309, 750, 774
AflII CTTAAG 1 cut(s) 716
AgsI TTSAA 2 cut(s) 337, 1366
AjnI CCWGG 2 cut(s) 168, 520
Alw21I GWGCWC 2 cut(s) 26, 90
Alw26I GTCTC 2 cut(s) 104, 427
AlwI GGATC 6 cut(s) 504, 511, 572, 689, 702, 706
AoxI GGCC 7 cut(s) 238, 279, 324, 387, 434, 752, 1139
ApeKI GCWGC 4 cut(s) 40, 344, 805, 1337
Asp700I GAANNNNTTC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 765
AspS9I GGNCC 4 cut(s) 312, 435, 727, 740
AsuC2I CCSGG 2 cut(s) 57, 278
AsuHPI GGTGA 3 cut(s) 956, 1012, 1273
AvaII GGWCC 3 cut(s) 312, 727, 740
AxyI CCTNAGG 1 cut(s) 1035
BamHI GGATCC 1 cut(s) 694
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 3 cut(s) 26, 90, 1033
BauI CACGAG 2 cut(s) 424, 999
BbsI GAAGAC 2 cut(s) 256, 1350
Bbv12I GWGCWC 2 cut(s) 26, 90
BbvI GCAGC 4 cut(s) 27, 356, 817, 1349
BccI CCATC 5 cut(s) 326, 626, 871, 935, 1252
BciT130I CCWGG 2 cut(s) 170, 522
BclI TGATCA 1 cut(s) 862
BcnI CCSGG 2 cut(s) 57, 278
BcoDI GTCTC 2 cut(s) 104, 427
BfaI CTAG 4 cut(s) 44, 227, 467, 1013
BfoI RGCGCY 1 cut(s) 766
BfrI CTTAAG 1 cut(s) 716
BglI GCCNNNNNGGC 2 cut(s) 323, 760
BglII AGATCT 1 cut(s) 658
BisI GCNGC 6 cut(s) 41, 252, 345, 806, 1142, 1338
BlpI GCTNAGC 1 cut(s) 896
BlsI GCNGC 6 cut(s) 42, 253, 346, 807, 1143, 1339
Bme1390I CCNGG 4 cut(s) 57, 170, 278, 522
Bme18I GGWCC 3 cut(s) 312, 727, 740
BmgT120I GGNCC 4 cut(s) 312, 435, 727, 740
BmiI GGNNCC 6 cut(s) 370, 437, 696, 723, 742, 1032
BmrFI CCNGG 4 cut(s) 57, 170, 278, 522
BmsI GCATC 2 cut(s) 283, 934
BoxI GACNNNNGTC 1 cut(s) 1008
BpiI GAAGAC 2 cut(s) 256, 1350
BpmI CTGGAG 2 cut(s) 683, 1124
Bpu1102I GCTNAGC 1 cut(s) 896
BpuEI CTTGAG 2 cut(s) 392, 497
BpuMI CCSGG 2 cut(s) 57, 278
BsaAI YACGTR 1 cut(s) 602
BsaJI CCNNGG 7 cut(s) 9, 55, 168, 327, 384, 520, 773
BsaWI WCCGGW 3 cut(s) 309, 541, 724
BsaXI ACNNNNNCTCC 2 cut(s) 1015, 1045
Bsc4I CCNNNNNNNGG 7 cut(s) 56, 61, 62, 82, 309, 750, 774
Bse118I RCCGGY 3 cut(s) 340, 754, 1219
Bse21I CCTNAGG 1 cut(s) 1035
Bse3DI GCAATG 1 cut(s) 961
BseBI CCWGG 2 cut(s) 170, 522
BseDI CCNNGG 7 cut(s) 9, 55, 168, 327, 384, 520, 773
BseGI GGATG 4 cut(s) 72, 143, 174, 925
BseLI CCNNNNNNNGG 7 cut(s) 56, 61, 62, 82, 309, 750, 774
BseMI GCAATG 1 cut(s) 961
BseMII CTCAG 2 cut(s) 917, 1049
BseRI GAGGAG 5 cut(s) 790, 1023, 1199, 1259, 1292
BseXI GCAGC 4 cut(s) 27, 356, 817, 1349
BseYI CCCAGC 1 cut(s) 50
BsgI GTGCAG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 542
BshFI GGCC 7 cut(s) 240, 281, 326, 389, 436, 754, 1141
BshNI GGYRCC 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 542
BsiHKAI GWGCWC 2 cut(s) 26, 90
BsiSI CCGG 9 cut(s) 57, 237, 278, 310, 341, 542, 725, 755, 1220
BslFI GGGAC 2 cut(s) 78, 726
BslI CCNNNNNNNGG 7 cut(s) 56, 61, 62, 82, 309, 750, 774
BsmAI GTCTC 2 cut(s) 104, 427
BsmFI GGGAC 2 cut(s) 78, 726
BsnI GGCC 7 cut(s) 240, 281, 326, 389, 436, 754, 1141
Bsp1286I GDGCHC 3 cut(s) 26, 90, 1033
Bsp1720I GCTNAGC 1 cut(s) 896
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 7 cut(s) 183, 252, 315, 372, 509, 843, 1142
BspANI GGCC 7 cut(s) 240, 281, 326, 389, 436, 754, 1141
BspCNI CTCAG 2 cut(s) 916, 1048
BspLI GGNNCC 6 cut(s) 370, 437, 696, 723, 742, 1032
BspPI GGATC 6 cut(s) 504, 511, 572, 689, 702, 706
BspT107I GGYRCC 1 cut(s) 368
BspTI CTTAAG 1 cut(s) 716
BsrBI CCGCTC 3 cut(s) 511, 843, 1144
BsrDI GCAATG 1 cut(s) 961
BsrFI RCCGGY 3 cut(s) 340, 754, 1219
BssAI RCCGGY 3 cut(s) 340, 754, 1219
BssECI CCNNGG 7 cut(s) 9, 55, 168, 327, 384, 520, 773
BssNAI GTATAC 1 cut(s) 1112
BssSI CACGAG 2 cut(s) 424, 999
BssT1I CCWWGG 1 cut(s) 327
Bst1107I GTATAC 1 cut(s) 1112
Bst2BI CACGAG 2 cut(s) 424, 999
Bst2UI CCWGG 2 cut(s) 170, 522
Bst4CI ACNGT 2 cut(s) 130, 1085
BstAFI CTTAAG 1 cut(s) 716
BstBAI YACGTR 1 cut(s) 602
BstC8I GCNNGC 5 cut(s) 90, 342, 756, 1221, 1397
BstDEI CTNAG 4 cut(s) 677, 896, 903, 1035
BstDSI CCRYGG 3 cut(s) 9, 327, 384
BstEII GGTNACC 1 cut(s) 1018
BstF5I GGATG 4 cut(s) 72, 143, 174, 925
BstH2I RGCGCY 1 cut(s) 766
BstHHI GCGC 1 cut(s) 765
BstMAI GTCTC 2 cut(s) 104, 427
BstMCI CGRYCG 1 cut(s) 542
BstMWI GCNNNNNNNGC 6 cut(s) 158, 323, 760, 802, 1396, 1405
BstNI CCWGG 2 cut(s) 170, 522
BstNSI RCATGY 2 cut(s) 406, 805
BstPAI GACNNNNGTC 1 cut(s) 1008
BstPI GGTNACC 1 cut(s) 1018
BstSCI CCNGG 4 cut(s) 55, 168, 276, 520
BstSNI TACGTA 1 cut(s) 602
BstV1I GCAGC 4 cut(s) 27, 356, 817, 1349
BstV2I GAAGAC 2 cut(s) 256, 1350
BstX2I RGATCY 5 cut(s) 516, 577, 658, 694, 711
BstYI RGATCY 5 cut(s) 516, 577, 658, 694, 711
BstZ17I GTATAC 1 cut(s) 1112
Bsu36I CCTNAGG 1 cut(s) 1035
BsuRI GGCC 7 cut(s) 240, 281, 326, 389, 436, 754, 1141
BtgI CCRYGG 3 cut(s) 9, 327, 384
BtgZI GCGATG 1 cut(s) 1083
BtsCI GGATG 4 cut(s) 72, 143, 174, 925
BtsIMutI CAGTG 1 cut(s) 1081
Cac8I GCNNGC 5 cut(s) 90, 342, 756, 1221, 1397
CfoI GCGC 1 cut(s) 765
Cfr10I RCCGGY 3 cut(s) 340, 754, 1219
Cfr13I GGNCC 4 cut(s) 312, 435, 727, 740
CpoI CGGWCCG 1 cut(s) 312
Csp6I GTAC 1 cut(s) 47
CspI CGGWCCG 1 cut(s) 312
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 4 cut(s) 677, 896, 903, 1035
DraIII CACNNNGTG 1 cut(s) 1085
EaeI YGGCCR 5 cut(s) 238, 279, 324, 387, 1139
EciI GGCGGA 2 cut(s) 172, 304
Ecl136II GAGCTC 2 cut(s) 24, 88
Eco105I TACGTA 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 327
Eco24I GRGCYC 3 cut(s) 26, 90, 1033
Eco47I GGWCC 3 cut(s) 312, 727, 740
Eco53kI GAGCTC 2 cut(s) 24, 88
Eco57I CTGAAG 2 cut(s) 999, 1211
Eco81I CCTNAGG 1 cut(s) 1035
Eco91I GGTNACC 1 cut(s) 1018
EcoICRI GAGCTC 2 cut(s) 24, 88
EcoO65I GGTNACC 1 cut(s) 1018
EcoRII CCWGG 2 cut(s) 168, 520
EcoT14I CCWWGG 1 cut(s) 327
EcoT38I GRGCYC 3 cut(s) 26, 90, 1033
ErhI CCWWGG 1 cut(s) 327
FaqI GGGAC 2 cut(s) 78, 726
FbaI TGATCA 1 cut(s) 862
FblI GTMKAC 1 cut(s) 1111
Fnu4HI GCNGC 6 cut(s) 41, 252, 345, 806, 1142, 1338
FokI GGATG 4 cut(s) 59, 130, 161, 912
FriOI GRGCYC 3 cut(s) 26, 90, 1033
Fsp4HI GCNGC 6 cut(s) 41, 252, 345, 806, 1142, 1338
FspBI CTAG 4 cut(s) 44, 227, 467, 1013
GlaI GCGC 1 cut(s) 764
GluI GCNGC 6 cut(s) 41, 252, 345, 806, 1142, 1338
GsaI CCCAGC 1 cut(s) 54
GsuI CTGGAG 2 cut(s) 683, 1124
HaeII RGCGCY 1 cut(s) 766
HaeIII GGCC 7 cut(s) 240, 281, 326, 389, 436, 754, 1141
HapII CCGG 9 cut(s) 57, 237, 278, 310, 341, 542, 725, 755, 1220
HhaI GCGC 1 cut(s) 765
Hin6I GCGC 1 cut(s) 763
HinP1I GCGC 1 cut(s) 763
HincII GTYRAC 2 cut(s) 247, 646
HindII GTYRAC 2 cut(s) 247, 646
HinfI GANTC 6 cut(s) 420, 590, 665, 673, 997, 1201
HpaII CCGG 9 cut(s) 57, 237, 278, 310, 341, 542, 725, 755, 1220
HphI GGTGA 3 cut(s) 956, 1012, 1273
Hpy166II GTNNAC 3 cut(s) 247, 646, 1112
Hpy188I TCNGA 4 cut(s) 774, 906, 967, 996
Hpy188III TCNNGA 7 cut(s) 467, 514, 581, 662, 698, 1001, 1366
Hpy8I GTNNAC 3 cut(s) 247, 646, 1112
Hpy99I CGWCG 3 cut(s) 107, 137, 359
HpyAV CCTTC 7 cut(s) 88, 476, 604, 974, 1186, 1280, 1343
HpyCH4III ACNGT 2 cut(s) 130, 1085
HpyCH4IV ACGT 2 cut(s) 601, 1172
HpyCH4V TGCA 5 cut(s) 161, 528, 805, 925, 1379
HpyF10VI GCNNNNNNNGC 6 cut(s) 158, 323, 760, 802, 1396, 1405
HpyF3I CTNAG 4 cut(s) 677, 896, 903, 1035
HpySE526I ACGT 2 cut(s) 601, 1172
HspAI GCGC 1 cut(s) 763
KroI GCCGGC 3 cut(s) 340, 754, 1219
KroNI GCCGGC 3 cut(s) 342, 756, 1221
Ksp22I TGATCA 1 cut(s) 862
LmnI GCTCC 8 cut(s) 85, 279, 463, 770, 777, 840, 1036, 1186
Lsp1109I GCAGC 4 cut(s) 27, 356, 817, 1349
LweI GCATC 2 cut(s) 283, 934
MaeI CTAG 4 cut(s) 44, 227, 467, 1013
MaeII ACGT 2 cut(s) 601, 1172
MaeIII GTNAC 4 cut(s) 944, 1001, 1018, 1077
MbiI CCGCTC 3 cut(s) 511, 843, 1144
MboII GAAGA 6 cut(s) 256, 371, 557, 668, 1279, 1350
MfeI CAATTG 1 cut(s) 94
MflI RGATCY 5 cut(s) 516, 577, 658, 694, 711
MhlI GDGCHC 3 cut(s) 26, 90, 1033
MluCI AATT 3 cut(s) 94, 115, 867
MlyI GAGTC 5 cut(s) 429, 599, 674, 682, 991
MmeI TCCRAC 3 cut(s) 171, 1045, 1070
MroNI GCCGGC 3 cut(s) 340, 754, 1219
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 2 cut(s) 555, 717
MspA1I CMGCKG 2 cut(s) 254, 374
MspCI CTTAAG 1 cut(s) 716
MspI CCGG 9 cut(s) 57, 237, 278, 310, 341, 542, 725, 755, 1220
MspR9I CCNGG 4 cut(s) 57, 170, 278, 522
MunI CAATTG 1 cut(s) 94
MvaI CCWGG 2 cut(s) 170, 522
MwoI GCNNNNNNNGC 6 cut(s) 158, 323, 760, 802, 1396, 1405
NaeI GCCGGC 3 cut(s) 342, 756, 1221
NciI CCSGG 2 cut(s) 57, 278
NcoI CCATGG 1 cut(s) 327
NgoMIV GCCGGC 3 cut(s) 340, 754, 1219
NlaIV GGNNCC 6 cut(s) 370, 437, 696, 723, 742, 1032
NmeAIII GCCGAG 2 cut(s) 302, 1177
NmuCI GTSAC 4 cut(s) 944, 1001, 1018, 1077
NspI RCATGY 2 cut(s) 406, 805
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdiI GCCGGC 3 cut(s) 342, 756, 1221
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 1201
PkrI GCNGC 6 cut(s) 42, 253, 346, 807, 1143, 1339
PleI GAGTC 5 cut(s) 428, 598, 673, 681, 991
PpsI GAGTC 5 cut(s) 428, 598, 673, 681, 991
Ppu21I YACGTR 1 cut(s) 602
PshAI GACNNNNGTC 1 cut(s) 1008
Psp124BI GAGCTC 2 cut(s) 26, 90
Psp6I CCWGG 2 cut(s) 168, 520
PspEI GGTNACC 1 cut(s) 1018
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 2 cut(s) 168, 520
PspN4I GGNNCC 6 cut(s) 370, 437, 696, 723, 742, 1032
PspPI GGNCC 4 cut(s) 312, 435, 727, 740
PsuI RGATCY 5 cut(s) 516, 577, 658, 694, 711
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
Rsr2I CGGWCCG 1 cut(s) 312
RsrII CGGWCCG 1 cut(s) 312
SacI GAGCTC 2 cut(s) 26, 90
SaqAI TTAA 2 cut(s) 555, 717
SatI GCNGC 6 cut(s) 41, 252, 345, 806, 1142, 1338
Sau96I GGNCC 4 cut(s) 312, 435, 727, 740
SchI GAGTC 5 cut(s) 429, 599, 674, 682, 991
ScrFI CCNGG 4 cut(s) 57, 170, 278, 522
SduI GDGCHC 3 cut(s) 26, 90, 1033
SfaNI GCATC 2 cut(s) 283, 934
SinI GGWCC 3 cut(s) 312, 727, 740
SmlI CTYRAG 3 cut(s) 407, 512, 716
SmoI CTYRAG 3 cut(s) 407, 512, 716
SnaBI TACGTA 1 cut(s) 602
Sse9I AATT 3 cut(s) 94, 115, 867
SsiI CCGC 7 cut(s) 183, 252, 315, 372, 509, 843, 1142
SspMI CTAG 4 cut(s) 44, 227, 467, 1013
SstI GAGCTC 2 cut(s) 26, 90
StyD4I CCNGG 4 cut(s) 55, 168, 276, 520
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 2 cut(s) 130, 1085
TaiI ACGT 2 cut(s) 604, 1175
TaqI TCGA 5 cut(s) 105, 204, 357, 538, 1204
TaqII GACCGA 1 cut(s) 728
TasI AATT 3 cut(s) 94, 115, 867
TauI GCSGC 2 cut(s) 254, 1144
TfiI GAWTC 1 cut(s) 1201
Tru1I TTAA 2 cut(s) 555, 717
Tru9I TTAA 2 cut(s) 555, 717
TscAI CASTG 1 cut(s) 1088
TseFI GTSAC 4 cut(s) 944, 1001, 1018, 1077
TseI GCWGC 4 cut(s) 40, 344, 805, 1337
Tsp45I GTSAC 4 cut(s) 944, 1001, 1018, 1077
TspDTI ATGAA 6 cut(s) 132, 581, 586, 976, 1047, 1308
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 1 cut(s) 1088
Vha464I CTTAAG 1 cut(s) 716
VpaK11BI GGWCC 3 cut(s) 312, 727, 740
XbaI TCTAGA 1 cut(s) 466
XceI RCATGY 2 cut(s) 406, 805
XcmI CCANNNNNNNNNTGG 4 cut(s) 58, 325, 1134, 1177
XmiI GTMKAC 1 cut(s) 1111
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 4 cut(s) 44, 227, 467, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.