Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003264

Physical Location & Seq

Genomic Coordinates Reverse (-)

13835545 .. 13836606

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG160300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGCCACCTCATCTCCTTGTTGGAGGTTGCCACCTGCCTAGACACCCATCACAACTTCCATGCCACGGTCCTCGTCGTTTCATCCAACACATCTCCTGCTCTATCACAGGTCATCCAATCCGCCAAGTCCTGTAAGCTCCTTGGCATCATTGAACTCCCAGCACCCTCCGGCCACGACACCAACGCCGCCGGTTCAGTGTTCACACACCTCCCAGCCATCATGCGTGATGTCCGACCATCTCTCCAATCCGCAATTTCGGCCATGGAGCACAAGCCTAGCGCCATGATCGTTGATCTTTTCGGCACTGCAGCACTCACCATGGCAGAAGAGTTCCGTATGCTCAAGTATGTAACAGTAGCCTCTGCTTGGACGCTAAGTTTGCTTTTGTATGCGCCAATCCTGGAGAAGCAGATAGAAGGAGAATATCTGGACCAAAAGGAATTGTTAAACACCCCGGGTTGCAAGCCGGTTCGACCTGAAGATGTGGTGAAGCCGATGATGAATAGGAAGGATCGGGAATACGAATCCTTCATAAGAATTGGAAAAGAGATTACTTCAGTGAGTGATGGAATCTTGATCAACACATGGGAGGATCTGGAGCCGACTTGTCTTGAAGCTATGAGGGAGCACCCGGACTGGAAGCAGATAACTAAGGTTCCGCTGTACACTATCGGTCCCATGGTTAGACTGGCAGGGCAGTCCGGTGGTGGTGGTCCGAGGAGTGAGTTGTTGGATTGGCTGGATAAGCAACCAAGGGAGTCTGTGCTCTATATTTCATTTGGCAGTGGTGGGGTTCTTTCGGCTGAACAGATCACAGAGATGGCTTGGGGTTTAGAGCTTAGTAAGCAGAGGTTTATATGGGTGGTGCAGCCACCAAGCAAAGGAGGTGCTCAAGGCAATGACATTTCGGAGTATTTGCCTGAGGGGTTCATGGCTCGGACTGATGACAAGGGTCTAGTGGTCACCACTGGGCTCCTCAGTCGGAAATCTTGGCACATGCATCCGTTGGAGGGTTCCTATCGCACTGCGGTTGGAACTCAGCGCTGGAGAGTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

353

Amino Acids

39.07

Weight (kDa)

5.96

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13970 FvH4_1g13990 FvH4_1g14000
rosa_chinensis	RchiOBHm_Chr2g0102291 RchiOBHm_Chr5g0049051
rosa_laevigata	RLG00000017143 RLG00000027915 RLG00000029969 RLG00000034587
rosa_multiflora	Rmu_co8035894.1_g000001 Rmu_sc0000530.1_g000029 Rmu_sc0005055.1_g000021 Rmu_sc0008757.1_g000011 Rmu_sc0030874.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032820 Rroxscaffold_2G00140590 Rroxscaffold_2G00140600 Rroxscaffold_4G00297540 Rroxscaffold_4G00322380
rosa_rugosa	Rorug01G0070700 Rorug01G0070800 Rorug01G0266200 Rorug01G0266200 Rorug02G0106200 Rorug05G0242800
rosa_samantha	Rh1AG279800 Rh1BG069800 Rh1CG263900 Rh1DG091500 Rh2BG160200 Rh2BG160300 Rh2CG159800 Rh5AG322500 Rh5BG332800 Rh5CG357900
rosa_wichuraiana	Rw1G024870 Rw5G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	1056
AciI	CCGC	5 cut(s)	123, 189, 252, 662, 1031
AclWI	GGATC	2 cut(s)	522, 603
AcoI	YGGCCR	2 cut(s)	172, 261
AcuI	CTGAAG	2 cut(s)	501, 543
AfaI	GTAC	1 cut(s)	668
AfeI	AGCGCT	1 cut(s)	1046
AfiI	CCNNNNNNNGG	4 cut(s)	67, 369, 884, 1013
AgsI	TTSAA	2 cut(s)	155, 617
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	3 cut(s)	139, 620, 841
AluI	AGCT	3 cut(s)	139, 620, 841
Alw21I	GWGCWC	4 cut(s)	273, 633, 771, 895
AlwI	GGATC	2 cut(s)	522, 603
Ama87I	CYCGRG	1 cut(s)	457
Aor51HI	AGCGCT	1 cut(s)	1046
AoxI	GGCC	3 cut(s)	4, 172, 261
ApeKI	GCWGC	2 cut(s)	311, 871
ArsI	GACNNNNNNTTYG	2 cut(s)	364, 396
AspLEI	GCGC	3 cut(s)	284, 397, 1047
AspS9I	GGNCC	5 cut(s)	4, 70, 433, 677, 716
AsuC2I	CCSGG	3 cut(s)	458, 459, 635
AsuHPI	GGTGA	3 cut(s)	310, 502, 958
AvaI	CYCGRG	1 cut(s)	457
AvaII	GGWCC	4 cut(s)	70, 433, 677, 716
AxyI	CCTNAGG	1 cut(s)	924
BanII	GRGCYC	1 cut(s)	978
Bbv12I	GWGCWC	4 cut(s)	273, 633, 771, 895
BbvI	GCAGC	2 cut(s)	323, 883
BccI	CCATC	5 cut(s)	57, 227, 247, 563, 817
BciT130I	CCWGG	1 cut(s)	404
BclI	TGATCA	1 cut(s)	579
BcnI	CCSGG	3 cut(s)	458, 459, 635
BfaI	CTAG	3 cut(s)	41, 279, 959
BfmI	CTRYAG	1 cut(s)	309
BfoI	RGCGCY	2 cut(s)	285, 1048
BfuAI	ACCTGC	1 cut(s)	44
BisI	GCNGC	3 cut(s)	189, 312, 872
BlsI	GCNGC	3 cut(s)	190, 313, 873
Bme1390I	CCNGG	4 cut(s)	404, 458, 459, 635
Bme18I	GGWCC	4 cut(s)	70, 433, 677, 716
BmeT110I	CYCGRG	1 cut(s)	457
BmgT120I	GGNCC	5 cut(s)	4, 70, 433, 677, 716
BmiI	GGNNCC	5 cut(s)	603, 660, 679, 977, 1018
BmrFI	CCNGG	4 cut(s)	404, 458, 459, 635
BmrI	ACTGGG	1 cut(s)	981
BmsI	GCATC	2 cut(s)	156, 1012
BmuI	ACTGGG	1 cut(s)	981
BoxI	GACNNNNGTC	1 cut(s)	954
BpmI	CTGGAG	2 cut(s)	425, 620
BpuEI	CTTGAG	2 cut(s)	329, 879
BpuMI	CCSGG	3 cut(s)	458, 459, 635
BsaJI	CCNNGG	9 cut(s)	66, 142, 264, 321, 456, 457, 681, 719, 755
BsaWI	WCCGGW	1 cut(s)	704
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 228, 258
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 369, 884, 1013
Bse118I	RCCGGY	2 cut(s)	191, 469
Bse1I	ACTGG	3 cut(s)	644, 696, 976
Bse21I	CCTNAGG	1 cut(s)	924
Bse3DI	GCAATG	1 cut(s)	907
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	9 cut(s)	66, 142, 264, 321, 456, 457, 681, 719, 755
BseGI	GGATG	3 cut(s)	83, 114, 1003
BseLI	CCNNNNNNNGG	4 cut(s)	67, 369, 884, 1013
BseMI	GCAATG	1 cut(s)	907
BseMII	CTCAG	3 cut(s)	915, 994, 1055
BseNI	ACTGG	3 cut(s)	644, 696, 976
BseRI	GAGGAG	2 cut(s)	736, 968
BseXI	GCAGC	2 cut(s)	323, 883
BseYI	CCCAGC	2 cut(s)	160, 214
BsgI	GTGCAG	1 cut(s)	890
BshFI	GGCC	3 cut(s)	6, 174, 263
BsiHKAI	GWGCWC	4 cut(s)	273, 633, 771, 895
BsiHKCI	CYCGRG	1 cut(s)	457
BsiSI	CCGG	6 cut(s)	171, 192, 458, 470, 635, 705
BslFI	GGGAC	1 cut(s)	663
BslI	CCNNNNNNNGG	4 cut(s)	67, 369, 884, 1013
BsmFI	GGGAC	1 cut(s)	663
BsnI	GGCC	3 cut(s)	6, 174, 263
BsoBI	CYCGRG	1 cut(s)	457
Bsp1286I	GDGCHC	5 cut(s)	273, 633, 771, 895, 978
Bsp1407I	TGTACA	1 cut(s)	666
Bsp143I	GATC	6 cut(s)	288, 295, 514, 579, 595, 813
Bsp19I	CCATGG	3 cut(s)	264, 321, 681
BspACI	CCGC	5 cut(s)	123, 189, 252, 662, 1031
BspANI	GGCC	3 cut(s)	6, 174, 263
BspCNI	CTCAG	3 cut(s)	916, 993, 1054
BspLI	GGNNCC	5 cut(s)	603, 660, 679, 977, 1018
BspMAI	CTGCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	44
BspPI	GGATC	2 cut(s)	522, 603
BsrDI	GCAATG	1 cut(s)	907
BsrFI	RCCGGY	2 cut(s)	191, 469
BsrGI	TGTACA	1 cut(s)	666
BsrI	ACTGG	3 cut(s)	644, 696, 976
BssAI	RCCGGY	2 cut(s)	191, 469
BssECI	CCNNGG	9 cut(s)	66, 142, 264, 321, 456, 457, 681, 719, 755
BssMI	GATC	6 cut(s)	288, 295, 514, 579, 595, 813
BssNAI	GTATAC	1 cut(s)	1057
BssT1I	CCWWGG	5 cut(s)	142, 264, 321, 681, 755
Bst1107I	GTATAC	1 cut(s)	1057
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	2 cut(s)	70, 358
Bst6I	CTCTTC	1 cut(s)	324
BstAUI	TGTACA	1 cut(s)	666
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	6 cut(s)	377, 654, 842, 924, 980, 1041
BstDSI	CCRYGG	4 cut(s)	66, 264, 321, 681
BstEII	GGTNACC	1 cut(s)	964
BstF5I	GGATG	3 cut(s)	83, 114, 1003
BstH2I	RGCGCY	2 cut(s)	285, 1048
BstHHI	GCGC	3 cut(s)	284, 397, 1047
BstKTI	GATC	6 cut(s)	291, 298, 517, 582, 598, 816
BstMBI	GATC	6 cut(s)	288, 295, 514, 579, 595, 813
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 382, 748, 847
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	1 cut(s)	1003
BstPAI	GACNNNNGTC	1 cut(s)	954
BstPI	GGTNACC	1 cut(s)	964
BstSCI	CCNGG	4 cut(s)	402, 456, 457, 633
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	323, 883
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BstZ17I	GTATAC	1 cut(s)	1057
Bsu36I	CCTNAGG	1 cut(s)	924
BsuRI	GGCC	3 cut(s)	6, 174, 263
BtgI	CCRYGG	4 cut(s)	66, 264, 321, 681
BtsCI	GGATG	3 cut(s)	83, 114, 1003
BtsI	GCAGTG	3 cut(s)	306, 793, 1026
BtsIMutI	CAGTG	6 cut(s)	204, 306, 567, 793, 969, 1026
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	467
CfoI	GCGC	3 cut(s)	284, 397, 1047
Cfr10I	RCCGGY	2 cut(s)	191, 469
Cfr13I	GGNCC	5 cut(s)	4, 70, 433, 677, 716
Cfr9I	CCCGGG	1 cut(s)	457
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	667
CviAII	CATG	9 cut(s)	62, 223, 265, 286, 322, 588, 682, 934, 1000
CviQI	GTAC	1 cut(s)	667
DdeI	CTNAG	6 cut(s)	377, 654, 842, 924, 980, 1041
DpnI	GATC	6 cut(s)	290, 297, 516, 581, 597, 815
DpnII	GATC	6 cut(s)	288, 295, 514, 579, 595, 813
EaeI	YGGCCR	2 cut(s)	172, 261
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
EciI	GGCGGA	1 cut(s)	112
Eco130I	CCWWGG	5 cut(s)	142, 264, 321, 681, 755
Eco24I	GRGCYC	1 cut(s)	978
Eco47I	GGWCC	4 cut(s)	70, 433, 677, 716
Eco47III	AGCGCT	1 cut(s)	1046
Eco57I	CTGAAG	2 cut(s)	501, 543
Eco81I	CCTNAGG	1 cut(s)	924
Eco88I	CYCGRG	1 cut(s)	457
Eco91I	GGTNACC	1 cut(s)	964
EcoO65I	GGTNACC	1 cut(s)	964
EcoRII	CCWGG	1 cut(s)	402
EcoT14I	CCWWGG	5 cut(s)	142, 264, 321, 681, 755
EcoT22I	ATGCAT	1 cut(s)	1005
EcoT38I	GRGCYC	1 cut(s)	978
ErhI	CCWWGG	5 cut(s)	142, 264, 321, 681, 755
FaeI	CATG	9 cut(s)	65, 226, 268, 289, 325, 591, 685, 937, 1003
FaqI	GGGAC	1 cut(s)	663
FatI	CATG	9 cut(s)	61, 222, 264, 285, 321, 587, 681, 933, 999
FbaI	TGATCA	1 cut(s)	579
FblI	GTMKAC	1 cut(s)	1056
Fnu4HI	GCNGC	3 cut(s)	189, 312, 872
FokI	GGATG	3 cut(s)	70, 101, 990
FriOI	GRGCYC	1 cut(s)	978
Fsp4HI	GCNGC	3 cut(s)	189, 312, 872
FspBI	CTAG	3 cut(s)	41, 279, 959
GlaI	GCGC	3 cut(s)	283, 396, 1046
GluI	GCNGC	3 cut(s)	189, 312, 872
GsaI	CCCAGC	2 cut(s)	164, 218
GsuI	CTGGAG	2 cut(s)	425, 620
HaeII	RGCGCY	2 cut(s)	285, 1048
HaeIII	GGCC	3 cut(s)	6, 174, 263
HapII	CCGG	6 cut(s)	171, 192, 458, 470, 635, 705
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	3 cut(s)	284, 397, 1047
Hin1II	CATG	9 cut(s)	65, 226, 268, 289, 325, 591, 685, 937, 1003
Hin6I	GCGC	3 cut(s)	282, 395, 1045
HinP1I	GCGC	3 cut(s)	282, 395, 1045
HinfI	GANTC	3 cut(s)	527, 573, 761
HpaII	CCGG	6 cut(s)	171, 192, 458, 470, 635, 705
HphI	GGTGA	3 cut(s)	310, 502, 958
Hpy166II	GTNNAC	3 cut(s)	204, 669, 1057
Hpy188I	TCNGA	5 cut(s)	236, 720, 913, 942, 987
Hpy188III	TCNNGA	5 cut(s)	431, 518, 577, 599, 614
Hpy8I	GTNNAC	3 cut(s)	204, 669, 1057
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	413, 505, 541
HpyCH4III	ACNGT	2 cut(s)	70, 358
HpyCH4V	TGCA	4 cut(s)	311, 465, 871, 1003
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 382, 748, 847
HpyF3I	CTNAG	6 cut(s)	377, 654, 842, 924, 980, 1041
Hsp92II	CATG	9 cut(s)	65, 226, 268, 289, 325, 591, 685, 937, 1003
HspAI	GCGC	3 cut(s)	282, 395, 1045
Ksp22I	TGATCA	1 cut(s)	579
Kzo9I	GATC	6 cut(s)	288, 295, 514, 579, 595, 813
LmnI	GCTCC	5 cut(s)	144, 268, 601, 628, 981
Lsp1109I	GCAGC	2 cut(s)	323, 883
LweI	GCATC	2 cut(s)	156, 1012
MaeI	CTAG	3 cut(s)	41, 279, 959
MaeIII	GTNAC	2 cut(s)	352, 964
MalI	GATC	6 cut(s)	290, 297, 516, 581, 597, 815
MboI	GATC	6 cut(s)	288, 295, 514, 579, 595, 813
MboII	GAAGA	2 cut(s)	341, 494
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	5 cut(s)	273, 633, 771, 895, 978
MluCI	AATT	3 cut(s)	255, 443, 540
MlyI	GAGTC	1 cut(s)	770
MmeI	TCCRAC	6 cut(s)	111, 259, 714, 965, 990, 1015
Mph1103I	ATGCAT	1 cut(s)	1005
MseI	TTAA	1 cut(s)	449
MslI	CAYNNNNRTG	1 cut(s)	821
MspA1I	CMGCKG	1 cut(s)	664
MspI	CCGG	6 cut(s)	171, 192, 458, 470, 635, 705
MspR9I	CCNGG	4 cut(s)	404, 458, 459, 635
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	4 cut(s)	260, 382, 748, 847
NciI	CCSGG	3 cut(s)	458, 459, 635
NcoI	CCATGG	3 cut(s)	264, 321, 681
NdeII	GATC	6 cut(s)	288, 295, 514, 579, 595, 813
NlaIII	CATG	9 cut(s)	65, 226, 268, 289, 325, 591, 685, 937, 1003
NlaIV	GGNNCC	5 cut(s)	603, 660, 679, 977, 1018
NmuCI	GTSAC	1 cut(s)	964
NsiI	ATGCAT	1 cut(s)	1005
NspI	RCATGY	1 cut(s)	1003
PaqCI	CACCTGC	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	527, 573
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	3 cut(s)	190, 313, 873
PleI	GAGTC	1 cut(s)	769
PpsI	GAGTC	1 cut(s)	769
PshAI	GACNNNNGTC	1 cut(s)	954
Psp6I	CCWGG	1 cut(s)	402
PspEI	GGTNACC	1 cut(s)	964
PspFI	CCCAGC	2 cut(s)	160, 214
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	5 cut(s)	603, 660, 679, 977, 1018
PspPI	GGNCC	5 cut(s)	4, 70, 433, 677, 716
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	595
RsaI	GTAC	1 cut(s)	668
RsaNI	GTAC	1 cut(s)	667
RseI	CAYNNNNRTG	1 cut(s)	821
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	3 cut(s)	189, 312, 872
Sau3AI	GATC	6 cut(s)	288, 295, 514, 579, 595, 813
Sau96I	GGNCC	5 cut(s)	4, 70, 433, 677, 716
SchI	GAGTC	1 cut(s)	770
ScrFI	CCNGG	4 cut(s)	404, 458, 459, 635
SduI	GDGCHC	5 cut(s)	273, 633, 771, 895, 978
SfaNI	GCATC	2 cut(s)	156, 1012
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	4 cut(s)	70, 433, 677, 716
SmaI	CCCGGG	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	2 cut(s)	344, 894
SmoI	CTYRAG	2 cut(s)	344, 894
Sse9I	AATT	3 cut(s)	255, 443, 540
SsiI	CCGC	5 cut(s)	123, 189, 252, 662, 1031
SspMI	CTAG	3 cut(s)	41, 279, 959
StyD4I	CCNGG	4 cut(s)	402, 456, 457, 633
StyI	CCWWGG	5 cut(s)	142, 264, 321, 681, 755
TaaI	ACNGT	2 cut(s)	70, 358
TaqI	TCGA	1 cut(s)	475
TaqII	GACCGA	1 cut(s)	665
TasI	AATT	3 cut(s)	255, 443, 540
TatI	WGTACW	1 cut(s)	666
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	527, 573
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	6 cut(s)	204, 313, 567, 793, 976, 1033
TseFI	GTSAC	1 cut(s)	964
TseI	GCWGC	2 cut(s)	311, 871
Tsp45I	GTSAC	1 cut(s)	964
TspDTI	ATGAA	5 cut(s)	72, 518, 523, 768, 922
TspGWI	ACGGA	2 cut(s)	326, 996
TspMI	CCCGGG	1 cut(s)	457
TspRI	CASTG	6 cut(s)	204, 313, 567, 793, 976, 1033
VpaK11BI	GGWCC	4 cut(s)	70, 433, 677, 716
XceI	RCATGY	1 cut(s)	1003
XcmI	CCANNNNNNNNNTGG	1 cut(s)	688
XmaI	CCCGGG	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	1056
XspI	CTAG	3 cut(s)	41, 279, 959
Zsp2I	ATGCAT	1 cut(s)	1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.