Rroxscaffold_1G00032820

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003264
Physical Location & Seq
Forward (+)
47159683 .. 47161128
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032820.1

Sequence Viewer

Length: 1446 bp
ATGAGCGCAAAAGCACATGCGTTGCTAGTCCCAAGCCCCGGCATGGGCCACCTCATCCCCTTAATGGAGCTCGCCAGCTCCCTGGTCACCCACCACAACTGCCACGCCACACTCGTCGTCGTCGTTTCATCCAACGCCACCTCTCCGGCACAATCCCAACTCATCCGATCGGCCAAGACCCAGAAGCTCTACGACATAGTTGAGCTCCCAGCACCCTCCGGCCACGACTCCAACGCCGCCGGTTCAGTATTCACGCACCTCTCCGCCATCATGCTCGATACCCGATCATCTCTCCGCTCTGCAATCTCCGCCATGGAGCTCAAACCCGCCGCCATGATCGTCGATCTTTTCAGCACTGCAGTCCTCACTGTTGCACAAGAATTCCACATGCTCAAGTATGTAACGCTAGTCTCCTGTGCCTGGCCACTAACCTTGCTTCTGTATGCGCCAATTCTAGATAAACAGATAGATGGAGAGTATTTGGATCGCAAAGAGCCGCTGGAGATCCCGGGTTGCAAGCCGGTTCGACCTGAAGATGTGGTGAAGCCGATGATGAATAGGAAGGATCGTGAATACGAGTCCTTCTTAAGAATTGGGAAGGAGATTACTTCAATGAGTGATGGCATCTTGATCAACACATGGGAGGATCTGGAGCCCAACTGCCTTAAGGCTATGAGAGAGCACCCGGAGTGGAAGAAGATTGTTAGGGTTCCGCTGTACACTATCGGTCCCATGGTTAGACTGGCAGGGCAGTCCGGTGGTGGTGGTCCGAGGAGTGAGTTGTTGGATTGGCTGGATGAGCAACCTAGTGAGTCTGTGCTTTACATATCGTTCGGGAGCGGTGGGGTTCTTTCGGCTCAACAGATCACAGAGATGGCTTGGGGTTTAGAGCTTAGTAAGCAGAGGTTTATATGGGTGGTGCAGCCACCAAGCAAAGGAGGTGCTGGAGGCAATGACATTTCGGAGTATTTGCCTGAGGGGTTCATGGCTCGGACTCATGAAATGGGTGTGGTGGTCACCACTTGGGCTCCTCAGTCGGAAATCTTGGCTCATTCGTCGGTGGGAGGGTTTCTCTCGCACTGCGGTTGGAACTCGGCGCTGGAGAGTATACTGAATGGTGTGCCAATGATCGCATGGCCGCTATATGCAGAGCAGAAAATGGTTGCTACACTGCTGGTGGAGGAGCTCAAGGTGGCAATTCGACCTAAAGTTTTGCCAACAAAAGCAGTAGCAGGGAGGGAGGAGATTGAGATGTTGGTGAGGAAGATTATGGAGCAGAAAGAAGGAGATGCAATGAGGGCAAGAGCTAAAGAACTGAAAGCAAGTGGGGAAGAAGCTCTGAGTGTGGGCGGGTCTTCTTTCAATATGCTGTCTGAATTGTCAAGGCTATGCAAGATCAATTCCGAACAGCAATGCCAGAAAGTTGACACTGAAAAACTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

481

Amino Acids

52.7

Weight (kDa)

5.9

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 270 - 391 7.9e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 297, 840
AccI GTMKAC 1 cut(s) 1108
AclWI GGATC 4 cut(s) 492, 499, 573, 654
AcoI YGGCCR 4 cut(s) 171, 220, 422, 1136
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 1 cut(s) 719
AfiI CCNNNNNNNGG 6 cut(s) 38, 43, 44, 64, 420, 935
AflII CTTAAG 2 cut(s) 586, 665
AgsI TTSAA 2 cut(s) 612, 1363
AjnI CCWGG 2 cut(s) 81, 419
AluBI AGCT 9 cut(s) 70, 78, 187, 205, 319, 892, 1186, 1307, 1337
AluI AGCT 9 cut(s) 70, 78, 187, 205, 319, 892, 1186, 1307, 1337
Alw21I GWGCWC 5 cut(s) 72, 207, 321, 684, 1188
Alw26I GTCTC 1 cut(s) 415
AlwI GGATC 4 cut(s) 492, 499, 573, 654
Ama87I CYCGRG 1 cut(s) 508
AoxI GGCC 5 cut(s) 46, 171, 220, 422, 1136
ApeKI GCWGC 1 cut(s) 922
ApoI RAATTY 1 cut(s) 380
AspLEI GCGC 3 cut(s) 8, 448, 1099
AspS9I GGNCC 3 cut(s) 46, 728, 767
AsuC2I CCSGG 4 cut(s) 39, 509, 510, 686
AsuHPI GGTGA 4 cut(s) 79, 553, 1009, 1270
AvaI CYCGRG 1 cut(s) 508
AvaII GGWCC 2 cut(s) 728, 767
AxyI CCTNAGG 1 cut(s) 975
BalI TGGCCA 1 cut(s) 424
BanII GRGCYC 6 cut(s) 72, 207, 321, 657, 1030, 1188
BbsI GAAGAC 1 cut(s) 1347
Bbv12I GWGCWC 5 cut(s) 72, 207, 321, 684, 1188
BbvI GCAGC 1 cut(s) 934
BccI CCATC 4 cut(s) 275, 464, 614, 868
BciT130I CCWGG 2 cut(s) 83, 421
BclI TGATCA 1 cut(s) 630
BcnI CCSGG 4 cut(s) 39, 509, 510, 686
BcoDI GTCTC 1 cut(s) 415
BfaI CTAG 4 cut(s) 26, 407, 455, 807
BfmI CTRYAG 1 cut(s) 357
BfoI RGCGCY 1 cut(s) 1100
BfrI CTTAAG 2 cut(s) 586, 665
BisI GCNGC 5 cut(s) 237, 330, 497, 923, 1139
BlsI GCNGC 5 cut(s) 238, 331, 498, 924, 1140
Bme1390I CCNGG 6 cut(s) 39, 83, 421, 509, 510, 686
Bme18I GGWCC 2 cut(s) 728, 767
BmeT110I CYCGRG 1 cut(s) 508
BmgT120I GGNCC 3 cut(s) 46, 728, 767
BmiI GGNNCC 4 cut(s) 654, 711, 730, 1029
BmrFI CCNGG 6 cut(s) 39, 83, 421, 509, 510, 686
BmsI GCATC 2 cut(s) 633, 1279
BpiI GAAGAC 1 cut(s) 1347
BplI GAGNNNNNCTC 2 cut(s) 1056, 1088
BpmI CTGGAG 4 cut(s) 521, 671, 966, 1121
BpuEI CTTGAG 2 cut(s) 377, 1172
BpuMI CCSGG 4 cut(s) 39, 509, 510, 686
BsaJI CCNNGG 6 cut(s) 37, 81, 312, 508, 732, 770
BsaWI WCCGGW 1 cut(s) 755
BsaXI ACNNNNNCTCC 2 cut(s) 1012, 1042
Bsc4I CCNNNNNNNGG 6 cut(s) 38, 43, 44, 64, 420, 935
Bse118I RCCGGY 2 cut(s) 239, 520
Bse1I ACTGG 2 cut(s) 747, 1443
Bse21I CCTNAGG 1 cut(s) 975
Bse3DI GCAATG 3 cut(s) 958, 1299, 1418
BseBI CCWGG 2 cut(s) 83, 421
BseDI CCNNGG 6 cut(s) 37, 81, 312, 508, 732, 770
BseGI GGATG 4 cut(s) 54, 128, 162, 802
BseLI CCNNNNNNNGG 6 cut(s) 38, 43, 44, 64, 420, 935
BseMI GCAATG 3 cut(s) 958, 1299, 1418
BseMII CTCAG 3 cut(s) 966, 1046, 1331
BseNI ACTGG 2 cut(s) 747, 1443
BseRI GAGGAG 4 cut(s) 787, 1020, 1196, 1256
BseXI GCAGC 1 cut(s) 934
BseYI CCCAGC 1 cut(s) 208
BsgI GTGCAG 1 cut(s) 941
Bsh1285I CGRYCG 1 cut(s) 170
BshFI GGCC 5 cut(s) 48, 173, 222, 424, 1138
BsiEI CGRYCG 1 cut(s) 170
BsiHKAI GWGCWC 5 cut(s) 72, 207, 321, 684, 1188
BsiHKCI CYCGRG 1 cut(s) 508
BsiSI CCGG 8 cut(s) 39, 146, 219, 240, 509, 521, 686, 756
BslFI GGGAC 2 cut(s) 14, 714
BslI CCNNNNNNNGG 6 cut(s) 38, 43, 44, 64, 420, 935
BsmAI GTCTC 1 cut(s) 415
BsmFI GGGAC 2 cut(s) 14, 714
BsnI GGCC 5 cut(s) 48, 173, 222, 424, 1138
BsoBI CYCGRG 1 cut(s) 508
Bsp1286I GDGCHC 7 cut(s) 72, 207, 321, 657, 684, 1030, 1188
Bsp1407I TGTACA 1 cut(s) 717
Bsp19I CCATGG 2 cut(s) 312, 732
BspANI GGCC 5 cut(s) 48, 173, 222, 424, 1138
BspCNI CTCAG 3 cut(s) 967, 1045, 1332
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 4 cut(s) 654, 711, 730, 1029
BspMAI CTGCAG 1 cut(s) 361
BspPI GGATC 4 cut(s) 492, 499, 573, 654
BspTI CTTAAG 2 cut(s) 586, 665
BsrBI CCGCTC 2 cut(s) 297, 840
BsrDI GCAATG 3 cut(s) 958, 1299, 1418
BsrFI RCCGGY 2 cut(s) 239, 520
BsrGI TGTACA 1 cut(s) 717
BsrI ACTGG 2 cut(s) 747, 1443
BssAI RCCGGY 2 cut(s) 239, 520
BssECI CCNNGG 6 cut(s) 37, 81, 312, 508, 732, 770
BssNAI GTATAC 1 cut(s) 1109
BssT1I CCWWGG 2 cut(s) 312, 732
Bst1107I GTATAC 1 cut(s) 1109
Bst2UI CCWGG 2 cut(s) 83, 421
Bst4CI ACNGT 1 cut(s) 370
BstAFI CTTAAG 2 cut(s) 586, 665
BstAUI TGTACA 1 cut(s) 717
BstC8I GCNNGC 3 cut(s) 72, 76, 518
BstDEI CTNAG 4 cut(s) 893, 975, 1032, 1340
BstDSI CCRYGG 2 cut(s) 312, 732
BstEII GGTNACC 2 cut(s) 85, 1015
BstF5I GGATG 4 cut(s) 54, 128, 162, 802
BstH2I RGCGCY 1 cut(s) 1100
BstHHI GCGC 3 cut(s) 8, 448, 1099
BstMAI GTCTC 1 cut(s) 415
BstMCI CGRYCG 1 cut(s) 170
BstMWI GCNNNNNNNGC 4 cut(s) 308, 799, 898, 1298
BstNI CCWGG 2 cut(s) 83, 421
BstNSI RCATGY 2 cut(s) 20, 391
BstPI GGTNACC 2 cut(s) 85, 1015
BstSCI CCNGG 6 cut(s) 37, 81, 419, 507, 508, 684
BstSFI CTRYAG 1 cut(s) 357
BstV1I GCAGC 1 cut(s) 934
BstV2I GAAGAC 1 cut(s) 1347
BstX2I RGATCY 2 cut(s) 504, 646
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 2 cut(s) 504, 646
BstZ17I GTATAC 1 cut(s) 1109
Bsu36I CCTNAGG 1 cut(s) 975
BsuRI GGCC 5 cut(s) 48, 173, 222, 424, 1138
BtgI CCRYGG 2 cut(s) 312, 732
BtsCI GGATG 4 cut(s) 54, 128, 162, 802
BtsI GCAGTG 3 cut(s) 354, 1078, 1169
BtsIMutI CAGTG 5 cut(s) 354, 366, 1078, 1169, 1428
Cac8I GCNNGC 3 cut(s) 72, 76, 518
CciI TCATGA 1 cut(s) 997
CfoI GCGC 3 cut(s) 8, 448, 1099
Cfr10I RCCGGY 2 cut(s) 239, 520
Cfr13I GGNCC 3 cut(s) 46, 728, 767
Cfr9I CCCGGG 1 cut(s) 508
Csp6I GTAC 1 cut(s) 718
CspCI CAANNNNNGTGG 2 cut(s) 414, 449
CviQI GTAC 1 cut(s) 718
DdeI CTNAG 4 cut(s) 893, 975, 1032, 1340
EaeI YGGCCR 4 cut(s) 171, 220, 422, 1136
EciI GGCGGA 2 cut(s) 253, 298
Ecl136II GAGCTC 4 cut(s) 70, 205, 319, 1186
Eco130I CCWWGG 2 cut(s) 312, 732
Eco24I GRGCYC 6 cut(s) 72, 207, 321, 657, 1030, 1188
Eco47I GGWCC 2 cut(s) 728, 767
Eco53kI GAGCTC 4 cut(s) 70, 205, 319, 1186
Eco57I CTGAAG 1 cut(s) 552
Eco81I CCTNAGG 1 cut(s) 975
Eco88I CYCGRG 1 cut(s) 508
Eco91I GGTNACC 2 cut(s) 85, 1015
EcoICRI GAGCTC 4 cut(s) 70, 205, 319, 1186
EcoO65I GGTNACC 2 cut(s) 85, 1015
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 81, 419
EcoT14I CCWWGG 2 cut(s) 312, 732
EcoT38I GRGCYC 6 cut(s) 72, 207, 321, 657, 1030, 1188
ErhI CCWWGG 2 cut(s) 312, 732
FaqI GGGAC 2 cut(s) 14, 714
FauI CCCGC 2 cut(s) 334, 1343
FbaI TGATCA 1 cut(s) 630
FblI GTMKAC 1 cut(s) 1108
Fnu4HI GCNGC 5 cut(s) 237, 330, 497, 923, 1139
FokI GGATG 4 cut(s) 41, 115, 149, 809
FriOI GRGCYC 6 cut(s) 72, 207, 321, 657, 1030, 1188
Fsp4HI GCNGC 5 cut(s) 237, 330, 497, 923, 1139
FspBI CTAG 4 cut(s) 26, 407, 455, 807
GlaI GCGC 3 cut(s) 7, 447, 1098
GluI GCNGC 5 cut(s) 237, 330, 497, 923, 1139
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 4 cut(s) 521, 671, 966, 1121
HaeII RGCGCY 1 cut(s) 1100
HaeIII GGCC 5 cut(s) 48, 173, 222, 424, 1138
HapII CCGG 8 cut(s) 39, 146, 219, 240, 509, 521, 686, 756
HhaI GCGC 3 cut(s) 8, 448, 1099
Hin6I GCGC 3 cut(s) 6, 446, 1097
HinP1I GCGC 3 cut(s) 6, 446, 1097
HincII GTYRAC 1 cut(s) 1426
HindII GTYRAC 1 cut(s) 1426
HinfI GANTC 4 cut(s) 227, 578, 812, 994
HpaII CCGG 8 cut(s) 39, 146, 219, 240, 509, 521, 686, 756
HphI GGTGA 4 cut(s) 79, 553, 1009, 1270
Hpy166II GTNNAC 3 cut(s) 720, 1109, 1426
Hpy188I TCNGA 8 cut(s) 167, 771, 964, 993, 1039, 1341, 1375, 1405
Hpy188III TCNNGA 6 cut(s) 455, 569, 628, 650, 835, 998
Hpy8I GTNNAC 3 cut(s) 720, 1109, 1426
Hpy99I CGWCG 5 cut(s) 119, 122, 125, 344, 1060
HpyAV CCTTC 4 cut(s) 556, 592, 592, 1277
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4V TGCA 8 cut(s) 302, 359, 374, 516, 922, 1148, 1292, 1392
HpyF10VI GCNNNNNNNGC 4 cut(s) 308, 799, 898, 1298
HpyF3I CTNAG 4 cut(s) 893, 975, 1032, 1340
HspAI GCGC 3 cut(s) 6, 446, 1097
Ksp22I TGATCA 1 cut(s) 630
LmnI GCTCC 9 cut(s) 67, 83, 210, 316, 652, 837, 1033, 1183, 1273
Lsp1109I GCAGC 1 cut(s) 934
LweI GCATC 2 cut(s) 633, 1279
MaeI CTAG 4 cut(s) 26, 407, 455, 807
MaeIII GTNAC 3 cut(s) 85, 400, 1015
MbiI CCGCTC 2 cut(s) 297, 840
MboII GAAGA 6 cut(s) 545, 706, 709, 1276, 1343, 1347
MflI RGATCY 2 cut(s) 504, 646
MhlI GDGCHC 7 cut(s) 72, 207, 321, 657, 684, 1030, 1188
MlsI TGGCCA 1 cut(s) 424
MluCI AATT 6 cut(s) 380, 450, 591, 1197, 1376, 1399
MluNI TGGCCA 1 cut(s) 424
MlyI GAGTC 4 cut(s) 221, 587, 821, 988
MmeI TCCRAC 5 cut(s) 156, 255, 765, 1017, 1067
Mox20I TGGCCA 1 cut(s) 424
MscI TGGCCA 1 cut(s) 424
MseI TTAA 4 cut(s) 62, 587, 666, 1444
MslI CAYNNNNRTG 1 cut(s) 872
Msp20I TGGCCA 1 cut(s) 424
MspA1I CMGCKG 2 cut(s) 499, 715
MspCI CTTAAG 2 cut(s) 586, 665
MspI CCGG 8 cut(s) 39, 146, 219, 240, 509, 521, 686, 756
MspR9I CCNGG 6 cut(s) 39, 83, 421, 509, 510, 686
MvaI CCWGG 2 cut(s) 83, 421
MwoI GCNNNNNNNGC 4 cut(s) 308, 799, 898, 1298
NciI CCSGG 4 cut(s) 39, 509, 510, 686
NcoI CCATGG 2 cut(s) 312, 732
NlaIV GGNNCC 4 cut(s) 654, 711, 730, 1029
NmeAIII GCCGAG 1 cut(s) 1073
NmuCI GTSAC 2 cut(s) 85, 1015
NspI RCATGY 2 cut(s) 20, 391
PagI TCATGA 1 cut(s) 997
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 120
PkrI GCNGC 5 cut(s) 238, 331, 498, 924, 1140
Ple19I CGATCG 1 cut(s) 170
PleI GAGTC 4 cut(s) 221, 586, 820, 988
PpsI GAGTC 4 cut(s) 221, 586, 820, 988
Psp124BI GAGCTC 4 cut(s) 72, 207, 321, 1188
Psp6I CCWGG 2 cut(s) 81, 419
PspEI GGTNACC 2 cut(s) 85, 1015
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 2 cut(s) 81, 419
PspN4I GGNNCC 4 cut(s) 654, 711, 730, 1029
PspPI GGNCC 3 cut(s) 46, 728, 767
PstI CTGCAG 1 cut(s) 361
PsuI RGATCY 2 cut(s) 504, 646
PvuI CGATCG 1 cut(s) 170
RsaI GTAC 1 cut(s) 719
RsaNI GTAC 1 cut(s) 718
RseI CAYNNNNRTG 1 cut(s) 872
SacI GAGCTC 4 cut(s) 72, 207, 321, 1188
SaqAI TTAA 4 cut(s) 62, 587, 666, 1444
SatI GCNGC 5 cut(s) 237, 330, 497, 923, 1139
Sau96I GGNCC 3 cut(s) 46, 728, 767
SchI GAGTC 4 cut(s) 221, 587, 821, 988
ScrFI CCNGG 6 cut(s) 39, 83, 421, 509, 510, 686
SduI GDGCHC 7 cut(s) 72, 207, 321, 657, 684, 1030, 1188
SfaNI GCATC 2 cut(s) 633, 1279
SfcI CTRYAG 1 cut(s) 357
SinI GGWCC 2 cut(s) 728, 767
SmaI CCCGGG 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 872
SmlI CTYRAG 4 cut(s) 392, 586, 665, 1187
SmoI CTYRAG 4 cut(s) 392, 586, 665, 1187
Sse9I AATT 6 cut(s) 380, 450, 591, 1197, 1376, 1399
SspMI CTAG 4 cut(s) 26, 407, 455, 807
SstI GAGCTC 4 cut(s) 72, 207, 321, 1188
StyD4I CCNGG 6 cut(s) 37, 81, 419, 507, 508, 684
StyI CCWWGG 2 cut(s) 312, 732
TaaI ACNGT 1 cut(s) 370
TaqI TCGA 4 cut(s) 276, 342, 526, 1201
TaqII GACCGA 1 cut(s) 716
TasI AATT 6 cut(s) 380, 450, 591, 1197, 1376, 1399
TatI WGTACW 1 cut(s) 717
TauI GCSGC 4 cut(s) 239, 332, 499, 1141
Tru1I TTAA 4 cut(s) 62, 587, 666, 1444
Tru9I TTAA 4 cut(s) 62, 587, 666, 1444
TscAI CASTG 5 cut(s) 361, 373, 1085, 1176, 1435
TseFI GTSAC 2 cut(s) 85, 1015
TseI GCWGC 1 cut(s) 922
Tsp45I GTSAC 2 cut(s) 85, 1015
TspDTI ATGAA 4 cut(s) 117, 569, 973, 1014
TspMI CCCGGG 1 cut(s) 508
TspRI CASTG 5 cut(s) 361, 373, 1085, 1176, 1435
Vha464I CTTAAG 2 cut(s) 586, 665
VpaK11BI GGWCC 2 cut(s) 728, 767
XapI RAATTY 1 cut(s) 380
XbaI TCTAGA 1 cut(s) 454
XceI RCATGY 2 cut(s) 20, 391
XcmI CCANNNNNNNNNTGG 2 cut(s) 739, 1131
XmaI CCCGGG 1 cut(s) 508
XmiI GTMKAC 1 cut(s) 1108
XspI CTAG 4 cut(s) 26, 407, 455, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.