Rh5AG322500

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003264
Physical Location & Seq
Reverse (-)
47949144 .. 47950957
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG322500.1

Sequence Viewer

Length: 1449 bp
ATGGCGGAGATGAGCTCAAAACCACATGTGTTGCTAGTCCCAAGCCCCGGCATGGGCCACCTCATCCCCTTAATGGAGCTCGCCAGCTCCCTGGTCACCCATCACAACTGCCACGCCACACTCGTCGTCGTTTCATCCAACACCTCATCTCCGGCACAATCCCAACTCATCCGATCGGCCAAGACCCAGAAGCTCTACGACATAGTTGAGCTCCCAGCACCCTCCGGCCACGACTCCAACGCCGCCGGCTCAGTCTTCACGCACCTCTCCGCCATCATGCTCGATGCCCGATCATCTCTCCGGTCTGCGATCTCGGCCATGGAGCTCAAACCCGCCGCCATGATCGTTGATCTTTTCAGCACTGCAGTCCTCACTGTTGCACAAGAATTCCACATGCTCAAGTACGTAACTCTAGTCTCCTGTGCCTGGCCACTAACCTTGCTTCTATATGCGCCAATTCTAGATAAACAGATAGATGGAGAGTATCTGGATCGCAAAGAGCTGCTGGAGATCCCGGGTTGCAAGCCGGTTCGACCTGAAGATGTGGTGAAGCCGATGATGAATAGGAAGGATCGTGAATACGAGTCCTTCTTAAGAATTGGGAAGGAGATTACTTCAATGAGTGATGGCATCTTGATCAACACATGGGAGGATCTGGAGCCCAACTGCCTTAAGGCTATGAGAGAGCACCCGGAGTGGAAGAAGATTGTTAGGGTTCCGCTGTACACTATCGGCCCCATGGTTAGACTGGCAGGGCAGTCCGGTGGTGGTCCGAGGAGTGAGCTGTTGGATTGGCTGGATAAGCAACCTAGTGAGTCTGTGCTTTACATATCGTTTGGGAGCGGTGGGGTTCTTTCGGCTGAACAGATCACAGAGATGGCTTGGGGTTTAGAGCTTAGTAAGCAGAGGTTTATATGGGTGGTGCAGCCACCAAGCAAAGGAGGTGCTGAAGGCAATGACATTTCGGAGTATTTGCCTGAGGGGTTCATGGCCCGGACTCAGGAAATGGGTGTGGTGGTCACCACTTGGGCTCCTCAGTCGGAAATCTTGGCTCATTCGTCGGTGGGAGGGTTTCTCTCGCACTGCGGTTGGAACTCGGCGCTGGAGAGTGTACTGAATGGTGTGCCAATGATCGCATGGCCGCTATATGCAGAGCAGAAAATGGTTGCTACACTGCTGGTGGAGGAGCTCAAGGTGGCAATTCGACCTAAAGTTTTGCCAACAAAAGCAGTAGCAGGGAGGGAGGAGATTGAGATTTTGGTGAAGAAGATTATGGAGCAGAAAGAAGGAGATGCAATGAGGGCAAGAGCTAAAGAACTGAAAGCAAGTGGGGAAGAAGCTCTGAGTGTGGGCGGGTCTTCTTTCAATATGCTGTCTGAATTGTCAAGGCTATGCAAGATCAATACCGAACAGCAATTCCAGAAAGTTGACACTGAAAAACTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

482

Amino Acids

53.05

Weight (kDa)

5.68

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 271 - 393 5e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 843
AclWI GGATC 4 cut(s) 498, 505, 579, 660
AcoI YGGCCR 5 cut(s) 177, 226, 315, 428, 1139
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 2 cut(s) 558, 969
AfaI GTAC 3 cut(s) 404, 725, 1113
AfiI CCNNNNNNNGG 7 cut(s) 47, 52, 53, 73, 426, 938, 1000
AflII CTTAAG 2 cut(s) 592, 671
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 2 cut(s) 618, 1366
AjnI CCWGG 2 cut(s) 90, 425
AloI GAACNNNNNNTCC 2 cut(s) 1401, 1433
Alw21I GWGCWC 6 cut(s) 17, 81, 213, 327, 690, 1191
Alw26I GTCTC 1 cut(s) 421
AlwI GGATC 4 cut(s) 498, 505, 579, 660
Ama87I CYCGRG 1 cut(s) 514
AoxI GGCC 8 cut(s) 55, 177, 226, 315, 428, 733, 990, 1139
ApeKI GCWGC 2 cut(s) 502, 925
ApoI RAATTY 1 cut(s) 386
AspLEI GCGC 2 cut(s) 454, 1102
AspS9I GGNCC 4 cut(s) 55, 734, 770, 991
AsuC2I CCSGG 5 cut(s) 48, 515, 516, 692, 994
AsuHPI GGTGA 4 cut(s) 88, 559, 1012, 1273
AvaI CYCGRG 1 cut(s) 514
AvaII GGWCC 1 cut(s) 770
AxyI CCTNAGG 1 cut(s) 978
BalI TGGCCA 1 cut(s) 430
BanII GRGCYC 7 cut(s) 17, 81, 213, 327, 663, 1033, 1191
BbsI GAAGAC 2 cut(s) 247, 1350
Bbv12I GWGCWC 6 cut(s) 17, 81, 213, 327, 690, 1191
BbvI GCAGC 2 cut(s) 489, 937
BccI CCATC 5 cut(s) 108, 281, 470, 620, 871
BciT130I CCWGG 2 cut(s) 92, 427
BclI TGATCA 1 cut(s) 636
BcnI CCSGG 5 cut(s) 48, 515, 516, 692, 994
BcoDI GTCTC 1 cut(s) 421
BfaI CTAG 4 cut(s) 35, 413, 461, 810
BfmI CTRYAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 1103
BfrI CTTAAG 2 cut(s) 592, 671
BisI GCNGC 5 cut(s) 243, 336, 503, 926, 1142
BlsI GCNGC 5 cut(s) 244, 337, 504, 927, 1143
Bme1390I CCNGG 7 cut(s) 48, 92, 427, 515, 516, 692, 994
Bme18I GGWCC 1 cut(s) 770
BmeT110I CYCGRG 1 cut(s) 514
BmgT120I GGNCC 4 cut(s) 55, 734, 770, 991
BmiI GGNNCC 4 cut(s) 660, 717, 736, 1032
BmrFI CCNGG 7 cut(s) 48, 92, 427, 515, 516, 692, 994
BmsI GCATC 3 cut(s) 274, 639, 1282
BpiI GAAGAC 2 cut(s) 247, 1350
BplI GAGNNNNNCTC 3 cut(s) 31, 1059, 1091
BpmI CTGGAG 3 cut(s) 527, 677, 1124
BpuEI CTTGAG 2 cut(s) 383, 1175
BpuMI CCSGG 5 cut(s) 48, 515, 516, 692, 994
BsaAI YACGTR 1 cut(s) 406
BsaJI CCNNGG 6 cut(s) 46, 90, 318, 514, 738, 773
BsaWI WCCGGW 2 cut(s) 300, 761
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 1015, 1045
Bsc4I CCNNNNNNNGG 7 cut(s) 47, 52, 53, 73, 426, 938, 1000
Bse118I RCCGGY 2 cut(s) 245, 526
Bse1I ACTGG 2 cut(s) 753, 1446
Bse21I CCTNAGG 1 cut(s) 978
Bse3DI GCAATG 2 cut(s) 961, 1302
BseBI CCWGG 2 cut(s) 92, 427
BseDI CCNNGG 6 cut(s) 46, 90, 318, 514, 738, 773
BseGI GGATG 3 cut(s) 63, 134, 168
BseLI CCNNNNNNNGG 7 cut(s) 47, 52, 53, 73, 426, 938, 1000
BseMI GCAATG 2 cut(s) 961, 1302
BseMII CTCAG 5 cut(s) 264, 969, 1013, 1049, 1334
BseNI ACTGG 2 cut(s) 753, 1446
BseRI GAGGAG 4 cut(s) 790, 1023, 1199, 1259
BseXI GCAGC 2 cut(s) 489, 937
BseYI CCCAGC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 944
Bsh1285I CGRYCG 1 cut(s) 176
BshFI GGCC 8 cut(s) 57, 179, 228, 317, 430, 735, 992, 1141
BsiEI CGRYCG 1 cut(s) 176
BsiHKAI GWGCWC 6 cut(s) 17, 81, 213, 327, 690, 1191
BsiHKCI CYCGRG 1 cut(s) 514
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 7 cut(s) 47, 52, 53, 73, 426, 938, 1000
BsmAI GTCTC 1 cut(s) 421
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 8 cut(s) 57, 179, 228, 317, 430, 735, 992, 1141
BsoBI CYCGRG 1 cut(s) 514
Bsp1286I GDGCHC 8 cut(s) 17, 81, 213, 327, 663, 690, 1033, 1191
Bsp1407I TGTACA 1 cut(s) 723
Bsp19I CCATGG 2 cut(s) 318, 738
BspANI GGCC 8 cut(s) 57, 179, 228, 317, 430, 735, 992, 1141
BspCNI CTCAG 5 cut(s) 263, 970, 1012, 1048, 1335
BspLI GGNNCC 4 cut(s) 660, 717, 736, 1032
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 4 cut(s) 498, 505, 579, 660
BspTI CTTAAG 2 cut(s) 592, 671
BsrBI CCGCTC 1 cut(s) 843
BsrDI GCAATG 2 cut(s) 961, 1302
BsrFI RCCGGY 2 cut(s) 245, 526
BsrGI TGTACA 1 cut(s) 723
BsrI ACTGG 2 cut(s) 753, 1446
BssAI RCCGGY 2 cut(s) 245, 526
BssECI CCNNGG 6 cut(s) 46, 90, 318, 514, 738, 773
BssT1I CCWWGG 2 cut(s) 318, 738
Bst2UI CCWGG 2 cut(s) 92, 427
Bst4CI ACNGT 1 cut(s) 376
BstAFI CTTAAG 2 cut(s) 592, 671
BstAUI TGTACA 1 cut(s) 723
BstBAI YACGTR 1 cut(s) 406
BstC8I GCNNGC 4 cut(s) 81, 85, 247, 524
BstDEI CTNAG 6 cut(s) 250, 896, 978, 999, 1035, 1343
BstDSI CCRYGG 2 cut(s) 318, 738
BstEII GGTNACC 2 cut(s) 94, 1018
BstF5I GGATG 3 cut(s) 63, 134, 168
BstH2I RGCGCY 1 cut(s) 1103
BstHHI GCGC 2 cut(s) 454, 1102
BstMAI GTCTC 1 cut(s) 421
BstMCI CGRYCG 1 cut(s) 176
BstMWI GCNNNNNNNGC 4 cut(s) 314, 802, 901, 1301
BstNI CCWGG 2 cut(s) 92, 427
BstNSI RCATGY 2 cut(s) 29, 397
BstPI GGTNACC 2 cut(s) 94, 1018
BstSCI CCNGG 7 cut(s) 46, 90, 425, 513, 514, 690, 992
BstSFI CTRYAG 1 cut(s) 363
BstSNI TACGTA 1 cut(s) 406
BstV1I GCAGC 2 cut(s) 489, 937
BstV2I GAAGAC 2 cut(s) 247, 1350
BstX2I RGATCY 2 cut(s) 510, 652
BstXI CCANNNNNNTGG 1 cut(s) 91
BstYI RGATCY 2 cut(s) 510, 652
Bsu36I CCTNAGG 1 cut(s) 978
BsuRI GGCC 8 cut(s) 57, 179, 228, 317, 430, 735, 992, 1141
BtgI CCRYGG 2 cut(s) 318, 738
BtsCI GGATG 3 cut(s) 63, 134, 168
BtsI GCAGTG 3 cut(s) 360, 1081, 1172
BtsIMutI CAGTG 5 cut(s) 360, 372, 1081, 1172, 1431
Cac8I GCNNGC 4 cut(s) 81, 85, 247, 524
CfoI GCGC 2 cut(s) 454, 1102
Cfr10I RCCGGY 2 cut(s) 245, 526
Cfr13I GGNCC 4 cut(s) 55, 734, 770, 991
Cfr9I CCCGGG 1 cut(s) 514
Csp6I GTAC 3 cut(s) 403, 724, 1112
CspCI CAANNNNNGTGG 4 cut(s) 12, 47, 420, 455
CviQI GTAC 3 cut(s) 403, 724, 1112
DdeI CTNAG 6 cut(s) 250, 896, 978, 999, 1035, 1343
EaeI YGGCCR 5 cut(s) 177, 226, 315, 428, 1139
EciI GGCGGA 2 cut(s) 20, 259
Ecl136II GAGCTC 5 cut(s) 15, 79, 211, 325, 1189
Eco105I TACGTA 1 cut(s) 406
Eco130I CCWWGG 2 cut(s) 318, 738
Eco24I GRGCYC 7 cut(s) 17, 81, 213, 327, 663, 1033, 1191
Eco47I GGWCC 1 cut(s) 770
Eco53kI GAGCTC 5 cut(s) 15, 79, 211, 325, 1189
Eco57I CTGAAG 2 cut(s) 558, 969
Eco81I CCTNAGG 1 cut(s) 978
Eco88I CYCGRG 1 cut(s) 514
Eco91I GGTNACC 2 cut(s) 94, 1018
EcoICRI GAGCTC 5 cut(s) 15, 79, 211, 325, 1189
EcoO65I GGTNACC 2 cut(s) 94, 1018
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 90, 425
EcoT14I CCWWGG 2 cut(s) 318, 738
EcoT38I GRGCYC 7 cut(s) 17, 81, 213, 327, 663, 1033, 1191
ErhI CCWWGG 2 cut(s) 318, 738
FaqI GGGAC 1 cut(s) 23
FauI CCCGC 2 cut(s) 340, 1346
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 5 cut(s) 243, 336, 503, 926, 1142
FokI GGATG 3 cut(s) 50, 121, 155
FriOI GRGCYC 7 cut(s) 17, 81, 213, 327, 663, 1033, 1191
Fsp4HI GCNGC 5 cut(s) 243, 336, 503, 926, 1142
FspBI CTAG 4 cut(s) 35, 413, 461, 810
GlaI GCGC 2 cut(s) 453, 1101
GluI GCNGC 5 cut(s) 243, 336, 503, 926, 1142
GsaI CCCAGC 1 cut(s) 218
GsuI CTGGAG 3 cut(s) 527, 677, 1124
HaeII RGCGCY 1 cut(s) 1103
HaeIII GGCC 8 cut(s) 57, 179, 228, 317, 430, 735, 992, 1141
HhaI GCGC 2 cut(s) 454, 1102
Hin6I GCGC 2 cut(s) 452, 1100
HinP1I GCGC 2 cut(s) 452, 1100
HincII GTYRAC 1 cut(s) 1429
HindII GTYRAC 1 cut(s) 1429
HinfI GANTC 4 cut(s) 233, 584, 815, 997
HphI GGTGA 4 cut(s) 88, 559, 1012, 1273
Hpy166II GTNNAC 3 cut(s) 726, 1112, 1429
Hpy188I TCNGA 6 cut(s) 173, 774, 967, 1042, 1344, 1378
Hpy188III TCNNGA 7 cut(s) 461, 488, 575, 634, 656, 1001, 1420
Hpy8I GTNNAC 3 cut(s) 726, 1112, 1429
Hpy99I CGWCG 3 cut(s) 128, 131, 1063
HpyAV CCTTC 5 cut(s) 562, 598, 598, 944, 1280
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 7 cut(s) 365, 380, 522, 925, 1151, 1295, 1395
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 802, 901, 1301
HpyF3I CTNAG 6 cut(s) 250, 896, 978, 999, 1035, 1343
HpySE526I ACGT 1 cut(s) 405
HspAI GCGC 2 cut(s) 452, 1100
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 636
LmnI GCTCC 9 cut(s) 76, 92, 216, 322, 658, 840, 1036, 1186, 1276
Lsp1109I GCAGC 2 cut(s) 489, 937
LweI GCATC 3 cut(s) 274, 639, 1282
MaeI CTAG 4 cut(s) 35, 413, 461, 810
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 3 cut(s) 94, 406, 1018
MbiI CCGCTC 1 cut(s) 843
MboII GAAGA 8 cut(s) 247, 551, 712, 715, 1276, 1279, 1346, 1350
MflI RGATCY 2 cut(s) 510, 652
MhlI GDGCHC 8 cut(s) 17, 81, 213, 327, 663, 690, 1033, 1191
MlsI TGGCCA 1 cut(s) 430
MluCI AATT 6 cut(s) 386, 456, 597, 1200, 1379, 1415
MluNI TGGCCA 1 cut(s) 430
MlyI GAGTC 4 cut(s) 227, 593, 824, 991
MmeI TCCRAC 5 cut(s) 162, 261, 768, 1020, 1070
Mox20I TGGCCA 1 cut(s) 430
MroNI GCCGGC 1 cut(s) 245
MscI TGGCCA 1 cut(s) 430
MseI TTAA 4 cut(s) 71, 593, 672, 1447
MslI CAYNNNNRTG 1 cut(s) 875
Msp20I TGGCCA 1 cut(s) 430
MspA1I CMGCKG 1 cut(s) 721
MspCI CTTAAG 2 cut(s) 592, 671
MspR9I CCNGG 7 cut(s) 48, 92, 427, 515, 516, 692, 994
MvaI CCWGG 2 cut(s) 92, 427
MwoI GCNNNNNNNGC 4 cut(s) 314, 802, 901, 1301
NaeI GCCGGC 1 cut(s) 247
NciI CCSGG 5 cut(s) 48, 515, 516, 692, 994
NcoI CCATGG 2 cut(s) 318, 738
NgoMIV GCCGGC 1 cut(s) 245
NlaIV GGNNCC 4 cut(s) 660, 717, 736, 1032
NmeAIII GCCGAG 2 cut(s) 293, 1076
NmuCI GTSAC 2 cut(s) 94, 1018
NspI RCATGY 2 cut(s) 29, 397
PciI ACATGT 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 247
PkrI GCNGC 5 cut(s) 244, 337, 504, 927, 1143
Ple19I CGATCG 1 cut(s) 176
PleI GAGTC 4 cut(s) 227, 592, 823, 991
PpsI GAGTC 4 cut(s) 227, 592, 823, 991
Ppu21I YACGTR 1 cut(s) 406
PscI ACATGT 1 cut(s) 25
Psp124BI GAGCTC 5 cut(s) 17, 81, 213, 327, 1191
Psp6I CCWGG 2 cut(s) 90, 425
PspEI GGTNACC 2 cut(s) 94, 1018
PspFI CCCAGC 1 cut(s) 214
PspGI CCWGG 2 cut(s) 90, 425
PspN4I GGNNCC 4 cut(s) 660, 717, 736, 1032
PspPI GGNCC 4 cut(s) 55, 734, 770, 991
PstI CTGCAG 1 cut(s) 367
PsuI RGATCY 2 cut(s) 510, 652
PvuI CGATCG 1 cut(s) 176
RsaI GTAC 3 cut(s) 404, 725, 1113
RsaNI GTAC 3 cut(s) 403, 724, 1112
RseI CAYNNNNRTG 1 cut(s) 875
SacI GAGCTC 5 cut(s) 17, 81, 213, 327, 1191
SaqAI TTAA 4 cut(s) 71, 593, 672, 1447
SatI GCNGC 5 cut(s) 243, 336, 503, 926, 1142
Sau96I GGNCC 4 cut(s) 55, 734, 770, 991
SchI GAGTC 4 cut(s) 227, 593, 824, 991
ScrFI CCNGG 7 cut(s) 48, 92, 427, 515, 516, 692, 994
SduI GDGCHC 8 cut(s) 17, 81, 213, 327, 663, 690, 1033, 1191
SfaNI GCATC 3 cut(s) 274, 639, 1282
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 1 cut(s) 770
SmaI CCCGGG 1 cut(s) 516
SmiMI CAYNNNNRTG 1 cut(s) 875
SmlI CTYRAG 4 cut(s) 398, 592, 671, 1190
SmoI CTYRAG 4 cut(s) 398, 592, 671, 1190
SnaBI TACGTA 1 cut(s) 406
Sse9I AATT 6 cut(s) 386, 456, 597, 1200, 1379, 1415
SspMI CTAG 4 cut(s) 35, 413, 461, 810
SstI GAGCTC 5 cut(s) 17, 81, 213, 327, 1191
StyD4I CCNGG 7 cut(s) 46, 90, 425, 513, 514, 690, 992
StyI CCWWGG 2 cut(s) 318, 738
TaaI ACNGT 1 cut(s) 376
TaiI ACGT 1 cut(s) 408
TaqI TCGA 3 cut(s) 282, 532, 1204
TasI AATT 6 cut(s) 386, 456, 597, 1200, 1379, 1415
TatI WGTACW 2 cut(s) 723, 1111
TauI GCSGC 3 cut(s) 245, 338, 1144
Tru1I TTAA 4 cut(s) 71, 593, 672, 1447
Tru9I TTAA 4 cut(s) 71, 593, 672, 1447
TscAI CASTG 5 cut(s) 367, 379, 1088, 1179, 1438
TseFI GTSAC 2 cut(s) 94, 1018
TseI GCWGC 2 cut(s) 502, 925
Tsp45I GTSAC 2 cut(s) 94, 1018
TspDTI ATGAA 3 cut(s) 123, 575, 976
TspMI CCCGGG 1 cut(s) 514
TspRI CASTG 5 cut(s) 367, 379, 1088, 1179, 1438
Vha464I CTTAAG 2 cut(s) 592, 671
VpaK11BI GGWCC 1 cut(s) 770
XapI RAATTY 1 cut(s) 386
XbaI TCTAGA 1 cut(s) 460
XceI RCATGY 2 cut(s) 29, 397
XcmI CCANNNNNNNNNTGG 2 cut(s) 745, 1134
XmaI CCCGGG 1 cut(s) 514
XspI CTAG 4 cut(s) 35, 413, 461, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.