Rroxscaffold_2G00140600

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003264
Physical Location & Seq
Forward (+)
78851651 .. 78852223
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00140600.1

Sequence Viewer

Length: 573 bp
ATGGCTTGGGTTTTCGAGCTTAGTAAGCAGAGGTTTATATGGGTGGTGCAACCACCAAGCAAAGGAGGTGCTCAAGGCAATGACATTTTGGAGTATTTGCCTGAGGGGTTCATGGCTCGGACTCATGACAAGGGTCTAGTGGTCACCACTTGGGCTCCTCAGTCGGAAATCTTGGCACATGCATCCATTGGAGGGTTCCTATCACACTGCGGTTGGAACTCAGCGCTGGAGAGTATACTGAATGGCTTGTCAATGATCGCATGGCCACTGTACGCGGAGCAGAAAATGGTTGCCACACTACTGGTGGAGGAGCAAAAGGTGGCAATTCGACCTAAAGTCTTGCCAACAAAAGCAGTAGCAGGGAGGGAGGAGATTGAGATGTTGGCGAGGAAGATTACAGAGCAGAAAGACGGAGATGCAATGAGAGCAAGAGCTACAGAACTGAAAGCAAGTGGGGAAAAAGCTCTCTGCGTGGGGTCTTCTATCAACATGCTGTCTGAATTGTCAAGGCTATGCAAGATCAATACCGAACAGCAGTGCCAGACAGTTGGGCCTGATCAAATTCTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

190

Amino Acids

20.89

Weight (kDa)

6.32

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 44 - 101 1.3e-13 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 235
AccII CGCG 1 cut(s) 275
AciI CCGC 2 cut(s) 210, 275
AcoI YGGCCR 1 cut(s) 263
AcsI RAATTY 1 cut(s) 561
AfaI GTAC 1 cut(s) 272
AfeI AGCGCT 1 cut(s) 225
AfiI CCNNNNNNNGG 2 cut(s) 62, 192
AhdI GACNNNNNGTC 1 cut(s) 335
AluBI AGCT 3 cut(s) 19, 434, 464
AluI AGCT 3 cut(s) 19, 434, 464
Alw21I GWGCWC 1 cut(s) 73
Aor51HI AGCGCT 1 cut(s) 225
AoxI GGCC 2 cut(s) 263, 551
ApoI RAATTY 1 cut(s) 561
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 551
AsuHPI GGTGA 1 cut(s) 136
AxyI CCTNAGG 1 cut(s) 102
BalI TGGCCA 1 cut(s) 265
BanII GRGCYC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 73
BclI TGATCA 1 cut(s) 556
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 435
BfoI RGCGCY 1 cut(s) 227
BmeRI GACNNNNNGTC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 551
BmiI GGNNCC 2 cut(s) 156, 197
BmsI GCATC 2 cut(s) 191, 406
BoxI GACNNNNGTC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 471
BpmI CTGGAG 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 192
Bse1I ACTGG 1 cut(s) 306
Bse21I CCTNAGG 1 cut(s) 102
Bse3DI GCAATG 2 cut(s) 85, 426
BseGI GGATG 1 cut(s) 182
BseLI CCNNNNNNNGG 2 cut(s) 62, 192
BseMI GCAATG 2 cut(s) 85, 426
BseMII CTCAG 3 cut(s) 93, 173, 234
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 3 cut(s) 147, 323, 383
Bsh1236I CGCG 1 cut(s) 275
BshFI GGCC 2 cut(s) 265, 553
BsiHKAI GWGCWC 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 62, 192
BsnI GGCC 2 cut(s) 265, 553
Bsp1286I GDGCHC 2 cut(s) 73, 157
Bsp143I GATC 3 cut(s) 255, 519, 556
BspACI CCGC 2 cut(s) 210, 275
BspANI GGCC 2 cut(s) 265, 553
BspCNI CTCAG 3 cut(s) 94, 172, 233
BspFNI CGCG 1 cut(s) 275
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 156, 197
BsrDI GCAATG 2 cut(s) 85, 426
BsrI ACTGG 1 cut(s) 306
BssMI GATC 3 cut(s) 255, 519, 556
BssNAI GTATAC 1 cut(s) 236
Bst1107I GTATAC 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 270, 547
BstDEI CTNAG 4 cut(s) 20, 102, 159, 220
BstEII GGTNACC 1 cut(s) 142
BstF5I GGATG 1 cut(s) 182
BstFNI CGCG 1 cut(s) 275
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 3 cut(s) 258, 522, 559
BstMBI GATC 3 cut(s) 255, 519, 556
BstMWI GCNNNNNNNGC 2 cut(s) 25, 425
BstNSI RCATGY 2 cut(s) 182, 493
BstPAI GACNNNNGTC 1 cut(s) 132
BstPI GGTNACC 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 435
BstUI CGCG 1 cut(s) 275
BstV2I GAAGAC 1 cut(s) 471
BstXI CCANNNNNNTGG 2 cut(s) 301, 548
BstZ17I GTATAC 1 cut(s) 236
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 2 cut(s) 265, 553
BtsCI GGATG 1 cut(s) 182
BtsI GCAGTG 2 cut(s) 205, 542
BtsIMutI CAGTG 3 cut(s) 205, 266, 542
CciI TCATGA 1 cut(s) 124
CfoI GCGC 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 551
Csp6I GTAC 1 cut(s) 271
CviAII CATG 5 cut(s) 112, 125, 179, 261, 490
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 4 cut(s) 20, 102, 159, 220
DpnI GATC 3 cut(s) 257, 521, 558
DpnII GATC 3 cut(s) 255, 519, 556
DriI GACNNNNNGTC 1 cut(s) 335
EaeI YGGCCR 1 cut(s) 263
Eam1105I GACNNNNNGTC 1 cut(s) 335
Eco24I GRGCYC 1 cut(s) 157
Eco47III AGCGCT 1 cut(s) 225
Eco81I CCTNAGG 1 cut(s) 102
Eco91I GGTNACC 1 cut(s) 142
EcoO65I GGTNACC 1 cut(s) 142
EcoT22I ATGCAT 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 157
FaeI CATG 5 cut(s) 115, 128, 182, 264, 493
FaiI YATR 9 cut(s) 38, 40, 113, 126, 180, 236, 262, 491, 514
FatI CATG 5 cut(s) 111, 124, 178, 260, 489
FbaI TGATCA 1 cut(s) 556
FblI GTMKAC 1 cut(s) 235
FokI GGATG 1 cut(s) 169
FriOI GRGCYC 1 cut(s) 157
FspBI CTAG 1 cut(s) 137
GlaI GCGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 248
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 2 cut(s) 265, 553
HhaI GCGC 1 cut(s) 226
Hin1II CATG 5 cut(s) 115, 128, 182, 264, 493
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 1 cut(s) 121
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 3 cut(s) 120, 166, 499
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 236
HpyCH4III ACNGT 2 cut(s) 270, 547
HpyCH4V TGCA 4 cut(s) 49, 182, 419, 516
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 425
HpyF3I CTNAG 4 cut(s) 20, 102, 159, 220
Hsp92II CATG 5 cut(s) 115, 128, 182, 264, 493
HspAI GCGC 1 cut(s) 224
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 3 cut(s) 255, 519, 556
LmnI GCTCC 3 cut(s) 160, 277, 310
LpnPI CCDG 6 cut(s) 114, 212, 287, 345, 554, 567
LweI GCATC 2 cut(s) 191, 406
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 142
MalI GATC 3 cut(s) 257, 521, 558
MboI GATC 3 cut(s) 255, 519, 556
MboII GAAGA 2 cut(s) 403, 471
MhlI GDGCHC 2 cut(s) 73, 157
MlsI TGGCCA 1 cut(s) 265
MluCI AATT 3 cut(s) 324, 500, 561
MluNI TGGCCA 1 cut(s) 265
MlyI GAGTC 1 cut(s) 115
MmeI TCCRAC 2 cut(s) 144, 194
MnlI CCTC 9 cut(s) 24, 59, 97, 168, 185, 301, 357, 361, 381
Mox20I TGGCCA 1 cut(s) 265
Mph1103I ATGCAT 1 cut(s) 184
MscI TGGCCA 1 cut(s) 265
Msp20I TGGCCA 1 cut(s) 265
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 25, 425
NdeII GATC 3 cut(s) 255, 519, 556
NlaIII CATG 5 cut(s) 115, 128, 182, 264, 493
NlaIV GGNNCC 2 cut(s) 156, 197
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 184
NspI RCATGY 2 cut(s) 182, 493
PagI TCATGA 1 cut(s) 124
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PshAI GACNNNNGTC 1 cut(s) 132
PspEI GGTNACC 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 156, 197
PspPI GGNCC 1 cut(s) 551
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
Sau3AI GATC 3 cut(s) 255, 519, 556
Sau96I GGNCC 1 cut(s) 551
SchI GAGTC 1 cut(s) 115
SduI GDGCHC 2 cut(s) 73, 157
SetI ASST 7 cut(s) 21, 35, 70, 321, 334, 436, 466
SfaNI GCATC 2 cut(s) 191, 406
SfcI CTRYAG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 3 cut(s) 324, 500, 561
SsiI CCGC 2 cut(s) 210, 275
SspMI CTAG 1 cut(s) 137
TaaI ACNGT 2 cut(s) 270, 547
TaqI TCGA 2 cut(s) 15, 328
TasI AATT 3 cut(s) 324, 500, 561
TscAI CASTG 3 cut(s) 212, 273, 542
TseFI GTSAC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 3 cut(s) 212, 273, 542
XapI RAATTY 1 cut(s) 561
XceI RCATGY 2 cut(s) 182, 493
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
XmiI GTMKAC 1 cut(s) 235
XspI CTAG 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.