Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8035894.1

Orthogroup ID

OG0003264

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 541

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8035894.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggcttggggtttagagcttagtaagcagaggtttatatgggtggtgcagccaccaagcaaaggaggtgctgaaggcaatgacatttcggagtatttgcctgaggggttcatggctcggactcaggaaatgggtgtggtggtcaccacttgggctcctcagtcggaaatcttggctcattcgtcggtgggagggtttctctcgcactgcggttggaactcggcgctggagagtatactgaatggtgtgccaatgatcgcatggccgctatatgcagagcagaaaatggttgctacactgctggtggaggagctcaaggtggcaattcgacctaaagttttgccaacaaaagcagtagcagggagggaggagattgagatgttggtgaagaagattatggagcagaaagaaggagatgcaatgagggcaagagctaaagaactgaaagcaagtggggaagaagctctgagtgtgggcgggtcttctttcaatatgctgtctgaattgtcaaggctatgcaagatcaataccgaacagcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

180

Amino Acids

19.76

Weight (kDa)

5.54

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13970 FvH4_1g13990 FvH4_1g14000
rosa_chinensis	RchiOBHm_Chr2g0102291 RchiOBHm_Chr5g0049051
rosa_laevigata	RLG00000017143 RLG00000027915 RLG00000029969 RLG00000034587
rosa_multiflora	Rmu_co8035894.1_g000001 Rmu_sc0000530.1_g000029 Rmu_sc0005055.1_g000021 Rmu_sc0008757.1_g000011 Rmu_sc0030874.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032820 Rroxscaffold_2G00140590 Rroxscaffold_2G00140600 Rroxscaffold_4G00297540 Rroxscaffold_4G00322380
rosa_rugosa	Rorug01G0070700 Rorug01G0070800 Rorug01G0266200 Rorug01G0266200 Rorug02G0106200 Rorug05G0242800
rosa_samantha	Rh1AG279800 Rh1BG069800 Rh1CG263900 Rh1DG091500 Rh2BG160200 Rh2BG160300 Rh2CG159800 Rh5AG322500 Rh5BG332800 Rh5CG357900
rosa_wichuraiana	Rw1G024870 Rw5G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	235
AciI	CCGC	3 cut(s)	210, 266, 477
AcoI	YGGCCR	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	490
AluBI	AGCT	4 cut(s)	19, 313, 434, 464
AluI	AGCT	4 cut(s)	19, 313, 434, 464
Alw21I	GWGCWC	1 cut(s)	315
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	136, 397
AxyI	CCTNAGG	1 cut(s)	102
BanII	GRGCYC	2 cut(s)	157, 315
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	61
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	2 cut(s)	50, 266
BlsI	GCNGC	2 cut(s)	51, 267
BmiI	GGNNCC	1 cut(s)	156
BmsI	GCATC	1 cut(s)	406
BpiI	GAAGAC	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
BpmI	CTGGAG	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse21I	CCTNAGG	1 cut(s)	102
Bse3DI	GCAATG	2 cut(s)	85, 426
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMI	GCAATG	2 cut(s)	85, 426
BseMII	CTCAG	4 cut(s)	93, 137, 173, 458
BseRI	GAGGAG	3 cut(s)	147, 323, 383
BseXI	GCAGC	1 cut(s)	61
BsgI	GTGCAG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	62
BsnI	GGCC	1 cut(s)	265
Bsp1286I	GDGCHC	2 cut(s)	157, 315
Bsp143I	GATC	2 cut(s)	255, 522
BspACI	CCGC	3 cut(s)	210, 266, 477
BspANI	GGCC	1 cut(s)	265
BspCNI	CTCAG	4 cut(s)	94, 136, 172, 459
BspLI	GGNNCC	1 cut(s)	156
BsrDI	GCAATG	2 cut(s)	85, 426
BssMI	GATC	2 cut(s)	255, 522
BssNAI	GTATAC	1 cut(s)	236
Bst1107I	GTATAC	1 cut(s)	236
BstDEI	CTNAG	5 cut(s)	20, 102, 123, 159, 467
BstEII	GGTNACC	1 cut(s)	142
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	2 cut(s)	258, 525
BstMBI	GATC	2 cut(s)	255, 522
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 425
BstPI	GGTNACC	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	474
BstZ17I	GTATAC	1 cut(s)	236
Bsu36I	CCTNAGG	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	265
BtsI	GCAGTG	2 cut(s)	205, 296
BtsIMutI	CAGTG	2 cut(s)	205, 296
CfoI	GCGC	1 cut(s)	226
CviAII	CATG	2 cut(s)	112, 261
DdeI	CTNAG	5 cut(s)	20, 102, 123, 159, 467
DpnI	GATC	2 cut(s)	257, 524
DpnII	GATC	2 cut(s)	255, 522
EaeI	YGGCCR	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	313
Eco24I	GRGCYC	2 cut(s)	157, 315
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	93
Eco81I	CCTNAGG	1 cut(s)	102
Eco91I	GGTNACC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	313
EcoO65I	GGTNACC	1 cut(s)	142
EcoT38I	GRGCYC	2 cut(s)	157, 315
FaeI	CATG	2 cut(s)	115, 264
FatI	CATG	2 cut(s)	111, 260
FauI	CCCGC	1 cut(s)	470
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	50, 266
FriOI	GRGCYC	2 cut(s)	157, 315
Fsp4HI	GCNGC	2 cut(s)	50, 266
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	2 cut(s)	50, 266
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	265
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	2 cut(s)	115, 264
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	1 cut(s)	121
HphI	GGTGA	2 cut(s)	136, 397
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	5 cut(s)	91, 120, 166, 468, 502
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	236
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	68, 404
HpyCH4V	TGCA	4 cut(s)	49, 275, 419, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 425
HpyF3I	CTNAG	5 cut(s)	20, 102, 123, 159, 467
Hsp92II	CATG	2 cut(s)	115, 264
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	255, 522
LmnI	GCTCC	3 cut(s)	160, 310, 400
LpnPI	CCDG	5 cut(s)	110, 114, 212, 287, 345
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	2 cut(s)	257, 524
MboI	GATC	2 cut(s)	255, 522
MboII	GAAGA	4 cut(s)	400, 403, 470, 474
MhlI	GDGCHC	2 cut(s)	157, 315
MluCI	AATT	2 cut(s)	324, 503
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	2 cut(s)	144, 194
MnlI	CCTC	9 cut(s)	24, 59, 97, 168, 185, 301, 357, 361, 417
MwoI	GCNNNNNNNGC	2 cut(s)	25, 425
NdeII	GATC	2 cut(s)	255, 522
NlaIII	CATG	2 cut(s)	115, 264
NlaIV	GGNNCC	1 cut(s)	156
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	51, 267
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	315
PspEI	GGTNACC	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	315
SatI	GCNGC	2 cut(s)	50, 266
Sau3AI	GATC	2 cut(s)	255, 522
SchI	GAGTC	1 cut(s)	115
SduI	GDGCHC	2 cut(s)	157, 315
SetI	ASST	8 cut(s)	21, 35, 70, 315, 321, 334, 436, 466
SfaNI	GCATC	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	324, 503
SsiI	CCGC	3 cut(s)	210, 266, 477
SstI	GAGCTC	1 cut(s)	315
TaqI	TCGA	1 cut(s)	328
TasI	AATT	2 cut(s)	324, 503
TauI	GCSGC	1 cut(s)	268
TscAI	CASTG	2 cut(s)	212, 303
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	100
TspRI	CASTG	2 cut(s)	212, 303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	258
XmiI	GTMKAC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.