Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003264

Physical Location & Seq

Genomic Coordinates Forward (+)

52439274 .. 52440429

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCTTGATGCCCGGTCTTCTCTCCGGTCCGCCATCTCGGCCATGGACTTCAAGCCGGCAGCCATGATCGTCGATCTTTTCGGCACCGCTGTTCTTCCCGTGGCCGATGAGTTCCACATGCTCAAGTATGTAAGAGTCTCGTGTGCTTGGCCCCTTGCCCTGCTTTTATACGCTCCTATTCGAGATAAGGAGGTGGAAGGAGAATACTTGGATCAAAAAGAACCGCTCAAGATCCCGGAGATAGCCGAGATAAGTGATGGGATTTTGGTTAACACTTGGGAAGATCTGGAGTCAATGAGCCTTAGACCCATGAGAGAGGATCCAGAGTGGAAGCAGATCCTTAAGGTTCCGGTCCATACTTTCGGTCCCATGATTAGGCAGGCAGGGAGCTCCACTCCGAGGAGCGAGGTGTTGGGTTGGCTGGACATGCAGCCCAATGCCTCTGTGATTTACATTTCTTTTGGGAGTGGCGGGGTTCTTTCGGCTGATCAAATTACCGAGATGGCCTGGGGTATAGAGCTTAGCGCTCAGAGATTTATATGGGTAGTGCATCCACCAAGCAAAGATGGTGGAAATCTTGGCTCATTCATCAGTTGGAGGTTTCTTGTCACACTGTGGTTGGAACTCGTCGCTGGAGAGTATAATGAATGGTGTGCCAATGATCACATGGCCACTCTATGCCGAGCAGAAAATGATTCTACGTTTTTCGTGGAGGAGCTGAAGGTGGCGATTCGACCTAAAGTTCTGCCGGCAAAGAGGATAGTAAGGAGGGAGGAGATTGAGATGATGGTGAGGAAGATTGTGGAGGAGAAAGAAGGAGATGAAATGAGGGCAAGAGCTAAAGAGCTAAAAAGGAGTGGGGAAGCAGCTTTGAGTGAAGGTGGGTCTTCGTTCAACACACACTCTGGATTGGCAAAGCTCTGCCAGCACAACTCGCAACATCAGAAAGTTGGTAGTGCGTTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

323

Amino Acids

36.09

Weight (kDa)

5.42

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13970 FvH4_1g13990 FvH4_1g14000
rosa_chinensis	RchiOBHm_Chr2g0102291 RchiOBHm_Chr5g0049051
rosa_laevigata	RLG00000017143 RLG00000027915 RLG00000029969 RLG00000034587
rosa_multiflora	Rmu_co8035894.1_g000001 Rmu_sc0000530.1_g000029 Rmu_sc0005055.1_g000021 Rmu_sc0008757.1_g000011 Rmu_sc0030874.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032820 Rroxscaffold_2G00140590 Rroxscaffold_2G00140600 Rroxscaffold_4G00297540 Rroxscaffold_4G00322380
rosa_rugosa	Rorug01G0070700 Rorug01G0070800 Rorug01G0266200 Rorug01G0266200 Rorug02G0106200 Rorug05G0242800
rosa_samantha	Rh1AG279800 Rh1BG069800 Rh1CG263900 Rh1DG091500 Rh2BG160200 Rh2BG160300 Rh2CG159800 Rh5AG322500 Rh5BG332800 Rh5CG357900
rosa_wichuraiana	Rw1G024870 Rw5G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccBSI	CCGCTC	1 cut(s)	226
AciI	CCGC	4 cut(s)	30, 87, 224, 471
AclWI	GGATC	5 cut(s)	219, 226, 314, 327, 331
AcoI	YGGCCR	3 cut(s)	39, 102, 669
AcuI	CTGAAG	1 cut(s)	740
AdeI	CACNNNGTG	1 cut(s)	615
AfeI	AGCGCT	1 cut(s)	526
AfiI	CCNNNNNNNGG	2 cut(s)	375, 399
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	52, 895
AjnI	CCWGG	1 cut(s)	506
AluBI	AGCT	7 cut(s)	390, 520, 718, 839, 847, 869, 919
AluI	AGCT	7 cut(s)	390, 520, 718, 839, 847, 869, 919
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	5 cut(s)	219, 226, 314, 327, 331
Aor51HI	AGCGCT	1 cut(s)	526
AoxI	GGCC	5 cut(s)	39, 102, 149, 504, 669
ApeKI	GCWGC	3 cut(s)	59, 430, 866
AspLEI	GCGC	1 cut(s)	527
AspS9I	GGNCC	4 cut(s)	27, 150, 352, 365
AsuC2I	CCSGG	2 cut(s)	13, 236
AsuHPI	GGTGA	1 cut(s)	802
AvaII	GGWCC	3 cut(s)	27, 352, 365
BalI	TGGCCA	1 cut(s)	671
BamHI	GGATCC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	392
BauI	CACGAG	1 cut(s)	139
BbsI	GAAGAC	2 cut(s)	9, 879
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	3 cut(s)	71, 442, 878
BccI	CCATC	5 cut(s)	41, 251, 496, 560, 781
BciT130I	CCWGG	1 cut(s)	508
BclI	TGATCA	2 cut(s)	487, 661
BcnI	CCSGG	2 cut(s)	13, 236
BcoDI	GTCTC	1 cut(s)	142
BfoI	RGCGCY	1 cut(s)	528
BfrI	CTTAAG	1 cut(s)	341
BglI	GCCNNNNNGGC	1 cut(s)	38
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	3 cut(s)	60, 431, 867
BlpI	GCTNAGC	1 cut(s)	521
BlsI	GCNGC	3 cut(s)	61, 432, 868
Bme1390I	CCNGG	3 cut(s)	13, 236, 508
Bme18I	GGWCC	3 cut(s)	27, 352, 365
BmgT120I	GGNCC	4 cut(s)	27, 150, 352, 365
BmiI	GGNNCC	5 cut(s)	85, 152, 321, 348, 367
BmrFI	CCNGG	3 cut(s)	13, 236, 508
BmsI	GCATC	1 cut(s)	559
BpiI	GAAGAC	2 cut(s)	9, 879
BplI	GAGNNNNNCTC	2 cut(s)	379, 411
BpmI	CTGGAG	2 cut(s)	308, 654
Bpu1102I	GCTNAGC	1 cut(s)	521
BpuEI	CTTGAG	2 cut(s)	107, 212
BpuMI	CCSGG	2 cut(s)	13, 236
BsaJI	CCNNGG	4 cut(s)	42, 99, 398, 507
BsaWI	WCCGGW	2 cut(s)	24, 349
Bsc4I	CCNNNNNNNGG	2 cut(s)	375, 399
Bse118I	RCCGGY	2 cut(s)	55, 748
BseBI	CCWGG	1 cut(s)	508
BseDI	CCNNGG	4 cut(s)	42, 99, 398, 507
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	2 cut(s)	375, 399
BseMII	CTCAG	1 cut(s)	542
BseRI	GAGGAG	4 cut(s)	415, 728, 788, 821
BseXI	GCAGC	3 cut(s)	71, 442, 878
BshFI	GGCC	5 cut(s)	41, 104, 151, 506, 671
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	392
BsiSI	CCGG	6 cut(s)	13, 25, 56, 236, 350, 749
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	375, 399
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	5 cut(s)	41, 104, 151, 506, 671
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	9 cut(s)	66, 73, 211, 231, 283, 319, 336, 487, 661
Bsp1720I	GCTNAGC	1 cut(s)	521
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	4 cut(s)	30, 87, 224, 471
BspANI	GGCC	5 cut(s)	41, 104, 151, 506, 671
BspCNI	CTCAG	1 cut(s)	541
BspLI	GGNNCC	5 cut(s)	85, 152, 321, 348, 367
BspPI	GGATC	5 cut(s)	219, 226, 314, 327, 331
BspT107I	GGYRCC	1 cut(s)	83
BspTI	CTTAAG	1 cut(s)	341
BsrBI	CCGCTC	1 cut(s)	226
BsrFI	RCCGGY	2 cut(s)	55, 748
BssAI	RCCGGY	2 cut(s)	55, 748
BssECI	CCNNGG	4 cut(s)	42, 99, 398, 507
BssMI	GATC	9 cut(s)	66, 73, 211, 231, 283, 319, 336, 487, 661
BssSI	CACGAG	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	42
Bst2BI	CACGAG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	508
Bst4CI	ACNGT	1 cut(s)	615
BstAFI	CTTAAG	1 cut(s)	341
BstC8I	GCNNGC	4 cut(s)	57, 381, 750, 926
BstDEI	CTNAG	3 cut(s)	302, 521, 528
BstDSI	CCRYGG	2 cut(s)	42, 99
BstF5I	GGATG	1 cut(s)	550
BstH2I	RGCGCY	1 cut(s)	528
BstHHI	GCGC	1 cut(s)	527
BstKTI	GATC	9 cut(s)	69, 76, 214, 234, 286, 322, 339, 490, 664
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	9 cut(s)	66, 73, 211, 231, 283, 319, 336, 487, 661
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 427, 925, 934
BstNI	CCWGG	1 cut(s)	508
BstNSI	RCATGY	2 cut(s)	121, 430
BstSCI	CCNGG	3 cut(s)	11, 234, 506
BstV1I	GCAGC	3 cut(s)	71, 442, 878
BstV2I	GAAGAC	2 cut(s)	9, 879
BstX2I	RGATCY	4 cut(s)	231, 283, 319, 336
BstYI	RGATCY	4 cut(s)	231, 283, 319, 336
BsuRI	GGCC	5 cut(s)	41, 104, 151, 506, 671
BtgI	CCRYGG	2 cut(s)	42, 99
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	611
Cac8I	GCNNGC	4 cut(s)	57, 381, 750, 926
CfoI	GCGC	1 cut(s)	527
Cfr10I	RCCGGY	2 cut(s)	55, 748
Cfr13I	GGNCC	4 cut(s)	27, 150, 352, 365
CpoI	CGGWCCG	1 cut(s)	27
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CspI	CGGWCCG	1 cut(s)	27
CviAII	CATG	7 cut(s)	43, 64, 118, 310, 370, 427, 667
DdeI	CTNAG	3 cut(s)	302, 521, 528
DpnI	GATC	9 cut(s)	68, 75, 213, 233, 285, 321, 338, 489, 663
DpnII	GATC	9 cut(s)	66, 73, 211, 231, 283, 319, 336, 487, 661
DraIII	CACNNNGTG	1 cut(s)	615
EaeI	YGGCCR	3 cut(s)	39, 102, 669
EciI	GGCGGA	1 cut(s)	19
Ecl136II	GAGCTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	392
Eco47I	GGWCC	3 cut(s)	27, 352, 365
Eco47III	AGCGCT	1 cut(s)	526
Eco53kI	GAGCTC	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	740
EcoICRI	GAGCTC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	7 cut(s)	46, 67, 121, 313, 373, 430, 670
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	7 cut(s)	42, 63, 117, 309, 369, 426, 666
FauI	CCCGC	1 cut(s)	464
FbaI	TGATCA	2 cut(s)	487, 661
Fnu4HI	GCNGC	3 cut(s)	60, 431, 867
FokI	GGATG	1 cut(s)	537
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	3 cut(s)	60, 431, 867
GlaI	GCGC	1 cut(s)	526
GluI	GCNGC	3 cut(s)	60, 431, 867
GsuI	CTGGAG	2 cut(s)	308, 654
HaeII	RGCGCY	1 cut(s)	528
HaeIII	GGCC	5 cut(s)	41, 104, 151, 506, 671
HapII	CCGG	6 cut(s)	13, 25, 56, 236, 350, 749
HhaI	GCGC	1 cut(s)	527
Hin1II	CATG	7 cut(s)	46, 67, 121, 313, 373, 430, 670
Hin6I	GCGC	1 cut(s)	525
HinP1I	GCGC	1 cut(s)	525
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	4 cut(s)	135, 290, 695, 730
HpaI	GTTAAC	1 cut(s)	271
HpaII	CCGG	6 cut(s)	13, 25, 56, 236, 350, 749
HphI	GGTGA	1 cut(s)	802
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	399, 531, 945
Hpy188III	TCNNGA	5 cut(s)	182, 229, 287, 323, 906
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	2 cut(s)	74, 632
HpyAV	CCTTC	4 cut(s)	191, 715, 809, 872
HpyCH4III	ACNGT	1 cut(s)	615
HpyCH4IV	ACGT	1 cut(s)	701
HpyCH4V	TGCA	2 cut(s)	430, 550
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 427, 925, 934
HpyF3I	CTNAG	3 cut(s)	302, 521, 528
HpySE526I	ACGT	1 cut(s)	701
Hsp92II	CATG	7 cut(s)	46, 67, 121, 313, 373, 430, 670
HspAI	GCGC	1 cut(s)	525
KroI	GCCGGC	2 cut(s)	55, 748
KroNI	GCCGGC	2 cut(s)	57, 750
Ksp22I	TGATCA	2 cut(s)	487, 661
KspAI	GTTAAC	1 cut(s)	271
Kzo9I	GATC	9 cut(s)	66, 73, 211, 231, 283, 319, 336, 487, 661
LmnI	GCTCC	5 cut(s)	178, 387, 395, 402, 715
Lsp1109I	GCAGC	3 cut(s)	71, 442, 878
LweI	GCATC	1 cut(s)	559
MaeII	ACGT	1 cut(s)	701
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	9 cut(s)	68, 75, 213, 233, 285, 321, 338, 489, 663
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	9 cut(s)	66, 73, 211, 231, 283, 319, 336, 487, 661
MboII	GAAGA	5 cut(s)	9, 86, 293, 808, 879
MflI	RGATCY	4 cut(s)	231, 283, 319, 336
MhlI	GDGCHC	1 cut(s)	392
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	1 cut(s)	492
MluNI	TGGCCA	1 cut(s)	671
MlyI	GAGTC	2 cut(s)	144, 299
MmeI	TCCRAC	2 cut(s)	575, 600
Mox20I	TGGCCA	1 cut(s)	671
MroNI	GCCGGC	2 cut(s)	55, 748
MscI	TGGCCA	1 cut(s)	671
MseI	TTAA	2 cut(s)	270, 342
Msp20I	TGGCCA	1 cut(s)	671
MspA1I	CMGCKG	1 cut(s)	89
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	6 cut(s)	13, 25, 56, 236, 350, 749
MspR9I	CCNGG	3 cut(s)	13, 236, 508
MvaI	CCWGG	1 cut(s)	508
MwoI	GCNNNNNNNGC	4 cut(s)	38, 427, 925, 934
NaeI	GCCGGC	2 cut(s)	57, 750
NciI	CCSGG	2 cut(s)	13, 236
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	9 cut(s)	66, 73, 211, 231, 283, 319, 336, 487, 661
NgoMIV	GCCGGC	2 cut(s)	55, 748
NlaIII	CATG	7 cut(s)	46, 67, 121, 313, 373, 430, 670
NlaIV	GGNNCC	5 cut(s)	85, 152, 321, 348, 367
NmeAIII	GCCGAG	3 cut(s)	17, 271, 707
NmuCI	GTSAC	1 cut(s)	607
NspI	RCATGY	2 cut(s)	121, 430
PdiI	GCCGGC	2 cut(s)	57, 750
PfeI	GAWTC	2 cut(s)	695, 730
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	3 cut(s)	61, 432, 868
PleI	GAGTC	2 cut(s)	143, 298
PpsI	GAGTC	2 cut(s)	143, 298
Psp124BI	GAGCTC	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	506
PspN4I	GGNNCC	5 cut(s)	85, 152, 321, 348, 367
PspPI	GGNCC	4 cut(s)	27, 150, 352, 365
PsuI	RGATCY	4 cut(s)	231, 283, 319, 336
Rsr2I	CGGWCCG	1 cut(s)	27
RsrII	CGGWCCG	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	270, 342
SatI	GCNGC	3 cut(s)	60, 431, 867
Sau3AI	GATC	9 cut(s)	66, 73, 211, 231, 283, 319, 336, 487, 661
Sau96I	GGNCC	4 cut(s)	27, 150, 352, 365
SchI	GAGTC	2 cut(s)	144, 299
ScrFI	CCNGG	3 cut(s)	13, 236, 508
SduI	GDGCHC	1 cut(s)	392
SfaNI	GCATC	1 cut(s)	559
SinI	GGWCC	3 cut(s)	27, 352, 365
SmlI	CTYRAG	3 cut(s)	122, 227, 341
SmoI	CTYRAG	3 cut(s)	122, 227, 341
Sse9I	AATT	1 cut(s)	492
SsiI	CCGC	4 cut(s)	30, 87, 224, 471
SstI	GAGCTC	1 cut(s)	392
StyD4I	CCNGG	3 cut(s)	11, 234, 506
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	615
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	3 cut(s)	72, 181, 733
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	1 cut(s)	492
TfiI	GAWTC	2 cut(s)	695, 730
Tru1I	TTAA	2 cut(s)	270, 342
Tru9I	TTAA	2 cut(s)	270, 342
TscAI	CASTG	1 cut(s)	618
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	3 cut(s)	59, 430, 866
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	3 cut(s)	577, 660, 837
TspRI	CASTG	1 cut(s)	618
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	3 cut(s)	27, 352, 365
XceI	RCATGY	2 cut(s)	121, 430
XcmI	CCANNNNNNNNNTGG	2 cut(s)	40, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.