Rorug02G0106200

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003264
Physical Location & Seq
Forward (+)
9081234 .. 9085318
4085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0106200.1

Sequence Viewer

Length: 1542 bp
ATGAGCGTCATGGATTTTTTTTTCATTTCCTTACATCCTATATCTATAAGTTTAGCAGCAATTCTTATAGCTATCTATATGGTTAGACCCCATGCCAGAAGATTATATGAGAAGAGAAAGAGATATCATCCTGTTGCCGGAACTGTCTTAAACCAACTGATCAACTTCCCTCGTCTGCACCATTACATGACTGAGCTTGCATGCAAATACACAACTTACAGGTTGCTTGGCTTTTTCAGAAGTGAGATTTACACCTCAGATCCTGCAAATGTCGAATACATGCTCAAAACAAACTTTCCAAACTATGGCAAGGGTTTGTACCACCACAGCATATTGTCAGATATTGCAGGGGATAGTATTTTCACTGTGGATGGTGAAAGTTGGCGGCATCAGAGGAAGTTATCGAGCTATGAATTCTCAACCAAAGTAATGAGAGACTTCAGCCATGCAGTCTTCAAAACGAATGCAGTAAAACTTGCTCAAATAATTTCTGAAGCTGTAAGCTGCGACCAAGCAATAGAAATCCAAGATTTGTTTATGAAATCATCCTTAGACTCAATCGTCAGGATTCTTCTTGGTATCGAACTAGACACCATGAGTGGAACAAATGAAGAAGGTATCCGGTTTTCCTATGTCTTTAATGAAGCAAACGAATTTATCCTGTATCGATATGTTGATTTCTTCTGGAAGATCAAGCGGTTCTTAAACATTGGTTCCGAAGCAGTGCTAAAGAATCATATCAAAGTGATCGATCAATTTATGTATAAATTAATCAAAAGCAAGATGGATGCTGTCCATAAGTCAGAAGATAGGCTACCTCTAAAGAAAAGAGACTTTATTTCAAGGCTTTTGGAAATGAAAGAGACCAATCCAAAGTATATTAAAGACATGGGGGTCAATTTTATTATTGCCGGGAAAGACACTGTGGCTACTACTCTTTCTTGGCTTTTTTATATGCTCTGCAAGTATCCTCGTATACAAGAAAAGATTGCACAGGAGGTTAGAGAAGCAACCAATCTGAAAGATAATTCAAGTGTGGATGAGCTTGCAGCCAGCCTTACTGAAGAAGTCCTCGACAAAATGCAATATCTCCATGCAGCTTTGACTGAGACACTCAGACTGTACCCTGCAGTTCCAGTGAATGCAAAAGTCTGTTTTTCCGATGATACCTGGCCAGATGGATTCAGTGTCAAGAAAGGGGATATGGTAGCATACCAACCTTATGCCATGGGCAGGATGAAGTTTCTATGGGGTGATGATGCAGAAGAGTTTCGACCAGAGAGATGGCTCGACGAAAATGACATTTTCCAGCCAGAAAGCCCTTTCAAATTCACAGTCTTCCAGGCTGGTCCCAGAATTTGCTTAGGAAAAGAATTTGCTTATAAGGAGATGAAGATCTTTTCTGCTGTGCTTTTAGGAAACTACATATTCAAGCTGAGCGAAAAGAAAACAGGGGTCAATTACAGGACCATGATCAACCTCCATATTGATGGGGGACTTTTCGTGCTTGCCTCTCCAAGATTGGAGCTTGAAAGATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

513

Amino Acids

59.56

Weight (kDa)

8.49

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 44 - 483 1.9e-68 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1383
AasI GACNNNNNNGTC 2 cut(s) 560, 893
AccB7I CCANNNNNTGG 1 cut(s) 305
AccI GTMKAC 1 cut(s) 976
AciI CCGC 2 cut(s) 385, 697
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 1172
AcsI RAATTY 5 cut(s) 413, 653, 1328, 1356, 1373
AcuI CTGAAG 3 cut(s) 424, 513, 1083
AfaI GTAC 2 cut(s) 320, 1124
AfiI CCNNNNNNNGG 3 cut(s) 137, 305, 1233
AgsI TTSAA 6 cut(s) 457, 843, 1032, 1327, 1432, 1532
AjnI CCWGG 2 cut(s) 1169, 1341
AluBI AGCT 9 cut(s) 71, 196, 408, 497, 504, 1045, 1100, 1435, 1528
AluI AGCT 9 cut(s) 71, 196, 408, 497, 504, 1045, 1100, 1435, 1528
Alw26I GTCTC 4 cut(s) 429, 825, 857, 1103
AlwI GGATC 1 cut(s) 254
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 1 cut(s) 1172
ApeKI GCWGC 4 cut(s) 56, 504, 1049, 1097
ApoI RAATTY 5 cut(s) 413, 653, 1328, 1356, 1373
ArsI GACNNNNNNTTYG 2 cut(s) 1320, 1352
AseI ATTAAT 1 cut(s) 770
Asp700I GAANNNNTTC 1 cut(s) 1269
AspS9I GGNCC 2 cut(s) 1349, 1467
AsuC2I CCSGG 1 cut(s) 913
AsuHPI GGTGA 2 cut(s) 386, 1265
AvaII GGWCC 2 cut(s) 1349, 1467
BalI TGGCCA 1 cut(s) 1174
BarI GAAGNNNNNNTAC 2 cut(s) 798, 830
BbsI GAAGAC 2 cut(s) 445, 1330
BbvI GCAGC 4 cut(s) 68, 491, 1061, 1109
BccI CCATC 5 cut(s) 365, 778, 1172, 1278, 1484
BciT130I CCWGG 2 cut(s) 1171, 1343
BciVI GTATCC 2 cut(s) 629, 978
BclI TGATCA 2 cut(s) 159, 1473
BcnI CCSGG 1 cut(s) 913
BcoDI GTCTC 4 cut(s) 429, 825, 857, 1103
BfaI CTAG 1 cut(s) 587
BfmI CTRYAG 1 cut(s) 1128
BfuI GTATCC 2 cut(s) 629, 978
BglII AGATCT 2 cut(s) 1395, 1535
BisI GCNGC 5 cut(s) 57, 386, 505, 1050, 1098
BlpI GCTNAGC 1 cut(s) 1436
BlsI GCNGC 5 cut(s) 58, 387, 506, 1051, 1099
Bme1390I CCNGG 3 cut(s) 913, 1171, 1343
Bme18I GGWCC 2 cut(s) 1349, 1467
BmgT120I GGNCC 2 cut(s) 1349, 1467
BmiI GGNNCC 2 cut(s) 715, 1351
BmrFI CCNGG 3 cut(s) 913, 1171, 1343
BmsI GCATC 3 cut(s) 397, 778, 1249
BpiI GAAGAC 2 cut(s) 445, 1330
Bpu10I CCTNAGC 1 cut(s) 1363
Bpu1102I GCTNAGC 1 cut(s) 1436
BpuMI CCSGG 1 cut(s) 913
Bsa29I ATCGAT 2 cut(s) 667, 750
BsaBI GATNNNNATC 1 cut(s) 1394
BsaI GGTCTC 1 cut(s) 857
BsaJI CCNNGG 1 cut(s) 1227
BsaWI WCCGGW 1 cut(s) 621
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 305, 1233
Bse1I ACTGG 1 cut(s) 1136
Bse8I GATNNNNATC 1 cut(s) 1394
BseBI CCWGG 2 cut(s) 1171, 1343
BseCI ATCGAT 2 cut(s) 667, 750
BseDI CCNNGG 1 cut(s) 1227
BseGI GGATG 7 cut(s) 34, 127, 376, 545, 793, 1045, 1242
BseJI GATNNNNATC 1 cut(s) 1394
BseLI CCNNNNNNNGG 3 cut(s) 137, 305, 1233
BseMII CTCAG 5 cut(s) 183, 270, 1098, 1129, 1427
BseNI ACTGG 1 cut(s) 1136
BseXI GCAGC 4 cut(s) 68, 491, 1061, 1109
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 1 cut(s) 1174
BshVI ATCGAT 2 cut(s) 667, 750
BsiSI CCGG 3 cut(s) 138, 622, 912
BslFI GGGAC 2 cut(s) 1335, 1509
BslI CCNNNNNNNGG 3 cut(s) 137, 305, 1233
BsmAI GTCTC 4 cut(s) 429, 825, 857, 1103
BsmFI GGGAC 2 cut(s) 1335, 1509
BsmI GAATGC 2 cut(s) 469, 1147
BsnI GGCC 1 cut(s) 1174
Bso31I GGTCTC 1 cut(s) 857
Bsp143I GATC 8 cut(s) 159, 259, 690, 747, 751, 1395, 1473, 1535
Bsp1720I GCTNAGC 1 cut(s) 1436
Bsp19I CCATGG 1 cut(s) 1227
BspACI CCGC 2 cut(s) 385, 697
BspANI GGCC 1 cut(s) 1174
BspCNI CTCAG 5 cut(s) 184, 269, 1099, 1128, 1428
BspDI ATCGAT 2 cut(s) 667, 750
BspLI GGNNCC 2 cut(s) 715, 1351
BspMAI CTGCAG 1 cut(s) 1132
BspPI GGATC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 857
BsrI ACTGG 1 cut(s) 1136
BssECI CCNNGG 1 cut(s) 1227
BssMI GATC 8 cut(s) 159, 259, 690, 747, 751, 1395, 1473, 1535
BssNAI GTATAC 1 cut(s) 977
BssT1I CCWWGG 1 cut(s) 1227
Bst1107I GTATAC 1 cut(s) 977
Bst2UI CCWGG 2 cut(s) 1171, 1343
Bst4CI ACNGT 5 cut(s) 145, 367, 925, 1122, 1336
Bst6I CTCTTC 2 cut(s) 107, 1260
BstC8I GCNNGC 5 cut(s) 198, 202, 1047, 1054, 1509
BstDEI CTNAG 8 cut(s) 192, 256, 550, 1107, 1115, 1363, 1436, 1539
BstDSI CCRYGG 1 cut(s) 1227
BstF5I GGATG 7 cut(s) 34, 127, 376, 545, 793, 1045, 1242
BstKTI GATC 8 cut(s) 162, 262, 693, 750, 754, 1398, 1476, 1538
BstMAI GTCTC 4 cut(s) 429, 825, 857, 1103
BstMBI GATC 8 cut(s) 159, 259, 690, 747, 751, 1395, 1473, 1535
BstNI CCWGG 2 cut(s) 1171, 1343
BstNSI RCATGY 2 cut(s) 204, 283
BstSCI CCNGG 3 cut(s) 911, 1169, 1341
BstSFI CTRYAG 1 cut(s) 1128
BstV1I GCAGC 4 cut(s) 68, 491, 1061, 1109
BstV2I GAAGAC 2 cut(s) 445, 1330
BstX2I RGATCY 3 cut(s) 259, 1395, 1535
BstXI CCANNNNNNTGG 2 cut(s) 1284, 1490
BstYI RGATCY 3 cut(s) 259, 1395, 1535
BstZ17I GTATAC 1 cut(s) 977
Bsu15I ATCGAT 2 cut(s) 667, 750
BsuI GTATCC 2 cut(s) 629, 978
BsuRI GGCC 1 cut(s) 1174
BsuTUI ATCGAT 2 cut(s) 667, 750
BtgI CCRYGG 1 cut(s) 1227
BtsCI GGATG 7 cut(s) 34, 127, 376, 545, 793, 1045, 1242
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 5 cut(s) 363, 729, 921, 1143, 1192
Cac8I GCNNGC 5 cut(s) 198, 202, 1047, 1054, 1509
CaiI CAGNNNCTG 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 1349, 1467
ClaI ATCGAT 2 cut(s) 667, 750
Csp6I GTAC 2 cut(s) 319, 1123
CviQI GTAC 2 cut(s) 319, 1123
DdeI CTNAG 8 cut(s) 192, 256, 550, 1107, 1115, 1363, 1436, 1539
DpnI GATC 8 cut(s) 161, 261, 692, 749, 753, 1397, 1475, 1537
DpnII GATC 8 cut(s) 159, 259, 690, 747, 751, 1395, 1473, 1535
DrdI GACNNNNNNGTC 2 cut(s) 560, 893
DseDI GACNNNNNNGTC 2 cut(s) 560, 893
EaeI YGGCCR 1 cut(s) 1172
Eam1104I CTCTTC 2 cut(s) 107, 1260
EarI CTCTTC 2 cut(s) 107, 1260
Eco130I CCWWGG 1 cut(s) 1227
Eco31I GGTCTC 1 cut(s) 857
Eco32I GATATC 1 cut(s) 125
Eco47I GGWCC 2 cut(s) 1349, 1467
Eco57I CTGAAG 3 cut(s) 424, 513, 1083
EcoRI GAATTC 1 cut(s) 413
EcoRII CCWGG 2 cut(s) 1169, 1341
EcoRV GATATC 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 1227
ErhI CCWWGG 1 cut(s) 1227
FalI AAGNNNNNCTT 2 cut(s) 686, 718
FaqI GGGAC 2 cut(s) 1335, 1509
FbaI TGATCA 2 cut(s) 159, 1473
FblI GTMKAC 1 cut(s) 976
Fnu4HI GCNGC 5 cut(s) 57, 386, 505, 1050, 1098
FokI GGATG 7 cut(s) 21, 114, 383, 532, 800, 1052, 1249
Fsp4HI GCNGC 5 cut(s) 57, 386, 505, 1050, 1098
FspBI CTAG 1 cut(s) 587
GluI GCNGC 5 cut(s) 57, 386, 505, 1050, 1098
HaeIII GGCC 1 cut(s) 1174
HapII CCGG 3 cut(s) 138, 622, 912
HinfI GANTC 4 cut(s) 554, 568, 733, 1182
HpaII CCGG 3 cut(s) 138, 622, 912
HphI GGTGA 2 cut(s) 386, 1265
Hpy166II GTNNAC 1 cut(s) 977
Hpy188III TCNNGA 3 cut(s) 565, 685, 1192
Hpy8I GTNNAC 1 cut(s) 977
Hpy99I CGWCG 1 cut(s) 1295
HpyAV CCTTC 1 cut(s) 608
HpyCH4III ACNGT 5 cut(s) 145, 367, 925, 1122, 1336
HpyF3I CTNAG 8 cut(s) 192, 256, 550, 1107, 1115, 1363, 1436, 1539
Ksp22I TGATCA 2 cut(s) 159, 1473
Kzo9I GATC 8 cut(s) 159, 259, 690, 747, 751, 1395, 1473, 1535
LmnI GCTCC 1 cut(s) 1525
Lsp1109I GCAGC 4 cut(s) 68, 491, 1061, 1109
LweI GCATC 3 cut(s) 397, 778, 1249
MaeI CTAG 1 cut(s) 587
MalI GATC 8 cut(s) 161, 261, 692, 749, 753, 1397, 1475, 1537
MboI GATC 8 cut(s) 159, 259, 690, 747, 751, 1395, 1473, 1535
MflI RGATCY 3 cut(s) 259, 1395, 1535
MlsI TGGCCA 1 cut(s) 1174
MluNI TGGCCA 1 cut(s) 1174
MlyI GAGTC 1 cut(s) 548
MnlI CCTC 9 cut(s) 180, 265, 387, 828, 981, 991, 1082, 1490, 1522
Mox20I TGGCCA 1 cut(s) 1174
MroXI GAANNNNTTC 1 cut(s) 1269
MscI TGGCCA 1 cut(s) 1174
MseI TTAA 5 cut(s) 149, 639, 704, 770, 882
MslI CAYNNNNRTG 1 cut(s) 1488
Msp20I TGGCCA 1 cut(s) 1174
MspI CCGG 3 cut(s) 138, 622, 912
MspR9I CCNGG 3 cut(s) 913, 1171, 1343
Mva1269I GAATGC 2 cut(s) 469, 1147
MvaI CCWGG 2 cut(s) 1171, 1343
NciI CCSGG 1 cut(s) 913
NcoI CCATGG 1 cut(s) 1227
NdeII GATC 8 cut(s) 159, 259, 690, 747, 751, 1395, 1473, 1535
NlaIV GGNNCC 2 cut(s) 715, 1351
NspI RCATGY 2 cut(s) 204, 283
PaeI GCATGC 1 cut(s) 204
PctI GAATGC 2 cut(s) 469, 1147
PdmI GAANNNNTTC 1 cut(s) 1269
PfeI GAWTC 3 cut(s) 568, 733, 1182
PflMI CCANNNNNTGG 1 cut(s) 305
PkrI GCNGC 5 cut(s) 58, 387, 506, 1051, 1099
PleI GAGTC 1 cut(s) 548
PpsI GAGTC 1 cut(s) 548
PshBI ATTAAT 1 cut(s) 770
PsiI TTATAA 1 cut(s) 1383
Psp6I CCWGG 2 cut(s) 1169, 1341
PspGI CCWGG 2 cut(s) 1169, 1341
PspN4I GGNNCC 2 cut(s) 715, 1351
PspPI GGNCC 2 cut(s) 1349, 1467
PstI CTGCAG 1 cut(s) 1132
PstNI CAGNNNCTG 1 cut(s) 263
PsuI RGATCY 3 cut(s) 259, 1395, 1535
RsaI GTAC 2 cut(s) 320, 1124
RsaNI GTAC 2 cut(s) 319, 1123
RseI CAYNNNNRTG 1 cut(s) 1488
SaqAI TTAA 5 cut(s) 149, 639, 704, 770, 882
SatI GCNGC 5 cut(s) 57, 386, 505, 1050, 1098
Sau3AI GATC 8 cut(s) 159, 259, 690, 747, 751, 1395, 1473, 1535
Sau96I GGNCC 2 cut(s) 1349, 1467
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 3 cut(s) 913, 1171, 1343
SfaNI GCATC 3 cut(s) 397, 778, 1249
SfcI CTRYAG 1 cut(s) 1128
SinI GGWCC 2 cut(s) 1349, 1467
SmiMI CAYNNNNRTG 1 cut(s) 1488
SphI GCATGC 1 cut(s) 204
SsiI CCGC 2 cut(s) 385, 697
SspMI CTAG 1 cut(s) 587
StyD4I CCNGG 3 cut(s) 911, 1169, 1341
StyI CCWWGG 1 cut(s) 1227
TaaI ACNGT 5 cut(s) 145, 367, 925, 1122, 1336
TaqI TCGA 8 cut(s) 273, 404, 582, 667, 750, 1074, 1273, 1290
TauI GCSGC 1 cut(s) 388
TfiI GAWTC 3 cut(s) 568, 733, 1182
Tru1I TTAA 5 cut(s) 149, 639, 704, 770, 882
Tru9I TTAA 5 cut(s) 149, 639, 704, 770, 882
TscAI CASTG 5 cut(s) 370, 729, 928, 1143, 1192
TseI GCWGC 4 cut(s) 56, 504, 1049, 1097
TspDTI ATGAA 8 cut(s) 13, 426, 554, 624, 657, 872, 1253, 1406
TspRI CASTG 5 cut(s) 370, 729, 928, 1143, 1192
Van91I CCANNNNNTGG 1 cut(s) 305
VpaK11BI GGWCC 2 cut(s) 1349, 1467
VspI ATTAAT 1 cut(s) 770
XapI RAATTY 5 cut(s) 413, 653, 1328, 1356, 1373
XceI RCATGY 2 cut(s) 204, 283
XmiI GTMKAC 1 cut(s) 976
XmnI GAANNNNTTC 1 cut(s) 1269
XspI CTAG 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.