Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003264

Physical Location & Seq

Genomic Coordinates Reverse (-)

10607058 .. 10608851

Gene Structure 1794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG069800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGACTTCCATAGAGGACATGAGCTCAAAAGCATTTGTGCTGCTAGTACCCAGCCCCGGCATGGGACACCTCATCCCCTTCTTGGAGCTCGCTAACTGCCTCGTTGCGCATCACAATTTCCACGCCACAGTCGTCGTCATTTCATCCAACACTTCTCCTGCACAATCCCAGGTCATCCAATCCGCCATGACCCCGAAACTTTTCGACATCATTGAGCTTCCACCACTAGACACGTCCGGCCAAGTCAACGCCGCTGGTTCAGTCTTCACACAGCTCCCGGCCATTATGCTTGATGCCCGGTCCTCTCTCCGGTCCGCCATCTCGGCCATGGACTTCAAGCCGGCAGCCATGATCGTTGATCTTTTCGGCACCGCTGTTCTTCCCGTGGCCGATGAGTTCCACATGCTCAAGTATGTAAGAGTCTCGTGTGCTTGGCCCCTTGCCCTGCTTTTATACGCTCCTATTCTAGATAAGGAGGTGGAAGGAGAATACTTGGATAAAAAAGAATCGCTCAAGATCCCGGGTTGCAAGCCTGTTCGACCGGAAGATGTTGTCAAGCCCATGATGAATAGAAAAGATCCCGAATACGAGTCCTTCATACGTATTGGGGTAGAGATAGCCGAGATGAGTGATGGGATTTTGGTTAACACTTGGGAAGATCTGGAGTCGATGAGTCTTAGACCCATGAGAGAGGATCTAGAGTGGAAGCAGATCCTTAAGGTTCCGGTCCATACTTTCGGTCCCATGATTAGGCAGGCAGGGAGCTCCACTCCGAGGAGCGAGGGTGTTGGGTTGGCTGGACATGCAGCCCAATGCCTCTGTGATTTACATTTCTTTTGGGAGTGGTGGGCTTCTGTCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

287

Amino Acids

31.68

Weight (kDa)

5.17

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13970 FvH4_1g13990 FvH4_1g14000
rosa_chinensis	RchiOBHm_Chr2g0102291 RchiOBHm_Chr5g0049051
rosa_laevigata	RLG00000017143 RLG00000027915 RLG00000029969 RLG00000034587
rosa_multiflora	Rmu_co8035894.1_g000001 Rmu_sc0000530.1_g000029 Rmu_sc0005055.1_g000021 Rmu_sc0008757.1_g000011 Rmu_sc0030874.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032820 Rroxscaffold_2G00140590 Rroxscaffold_2G00140600 Rroxscaffold_4G00297540 Rroxscaffold_4G00322380
rosa_rugosa	Rorug01G0070700 Rorug01G0070800 Rorug01G0266200 Rorug01G0266200 Rorug02G0106200 Rorug05G0242800
rosa_samantha	Rh1AG279800 Rh1BG069800 Rh1CG263900 Rh1DG091500 Rh2BG160200 Rh2BG160300 Rh2CG159800 Rh5AG322500 Rh5BG332800 Rh5CG357900
rosa_wichuraiana	Rw1G024870 Rw5G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	4 cut(s)	183, 252, 315, 372
AclWI	GGATC	4 cut(s)	511, 572, 702, 706
AcoI	YGGCCR	4 cut(s)	238, 279, 324, 387
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	7 cut(s)	56, 61, 62, 82, 309, 750, 774
AflII	CTTAAG	1 cut(s)	716
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	337
AjiI	CACGTC	1 cut(s)	234
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	5 cut(s)	24, 88, 217, 274, 765
AluI	AGCT	5 cut(s)	24, 88, 217, 274, 765
Alw21I	GWGCWC	3 cut(s)	26, 90, 767
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	4 cut(s)	511, 572, 702, 706
Ama87I	CYCGRG	1 cut(s)	520
AoxI	GGCC	5 cut(s)	238, 279, 324, 387, 434
ApeKI	GCWGC	3 cut(s)	40, 344, 806
Asp700I	GAANNNNTTC	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	5 cut(s)	300, 312, 435, 727, 740
AsuC2I	CCSGG	5 cut(s)	57, 278, 298, 521, 522
AvaI	CYCGRG	1 cut(s)	520
AvaII	GGWCC	4 cut(s)	300, 312, 727, 740
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	3 cut(s)	26, 90, 767
BauI	CACGAG	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	256
Bbv12I	GWGCWC	3 cut(s)	26, 90, 767
BbvI	GCAGC	3 cut(s)	27, 356, 818
BccI	CCATC	2 cut(s)	326, 626
BciT130I	CCWGG	1 cut(s)	170
BcnI	CCSGG	5 cut(s)	57, 278, 298, 521, 522
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	4 cut(s)	44, 227, 467, 698
BfrI	CTTAAG	1 cut(s)	716
BglI	GCCNNNNNGGC	1 cut(s)	323
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	4 cut(s)	41, 252, 345, 807
BlsI	GCNGC	4 cut(s)	42, 253, 346, 808
Bme1390I	CCNGG	6 cut(s)	57, 170, 278, 298, 521, 522
Bme18I	GGWCC	4 cut(s)	300, 312, 727, 740
BmeT110I	CYCGRG	1 cut(s)	520
BmgBI	CACGTC	1 cut(s)	234
BmgT120I	GGNCC	5 cut(s)	300, 312, 435, 727, 740
BmiI	GGNNCC	4 cut(s)	370, 437, 723, 742
BmrFI	CCNGG	6 cut(s)	57, 170, 278, 298, 521, 522
BmsI	GCATC	2 cut(s)	118, 283
BpiI	GAAGAC	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	754, 786
BpmI	CTGGAG	1 cut(s)	683
BpuEI	CTTGAG	2 cut(s)	392, 497
BpuMI	CCSGG	5 cut(s)	57, 278, 298, 521, 522
BsaAI	YACGTR	1 cut(s)	602
BsaJI	CCNNGG	6 cut(s)	55, 168, 327, 384, 520, 773
BsaWI	WCCGGW	3 cut(s)	309, 541, 724
BsaXI	ACNNNNNCTCC	2 cut(s)	769, 799
Bsc4I	CCNNNNNNNGG	7 cut(s)	56, 61, 62, 82, 309, 750, 774
Bse118I	RCCGGY	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	6 cut(s)	55, 168, 327, 384, 520, 773
BseGI	GGATG	3 cut(s)	72, 143, 174
BseLI	CCNNNNNNNGG	7 cut(s)	56, 61, 62, 82, 309, 750, 774
BseRI	GAGGAG	1 cut(s)	790
BseXI	GCAGC	3 cut(s)	27, 356, 818
BseYI	CCCAGC	1 cut(s)	50
BsgI	GTGCAG	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	542
BshFI	GGCC	5 cut(s)	240, 281, 326, 389, 436
BshNI	GGYRCC	1 cut(s)	368
BsiEI	CGRYCG	1 cut(s)	542
BsiHKAI	GWGCWC	3 cut(s)	26, 90, 767
BsiHKCI	CYCGRG	1 cut(s)	520
BsiSI	CCGG	9 cut(s)	57, 237, 278, 298, 310, 341, 521, 542, 725
BslFI	GGGAC	2 cut(s)	78, 726
BslI	CCNNNNNNNGG	7 cut(s)	56, 61, 62, 82, 309, 750, 774
BsmAI	GTCTC	1 cut(s)	427
BsmFI	GGGAC	2 cut(s)	78, 726
BsnI	GGCC	5 cut(s)	240, 281, 326, 389, 436
BsoBI	CYCGRG	1 cut(s)	520
Bsp1286I	GDGCHC	3 cut(s)	26, 90, 767
Bsp143I	GATC	7 cut(s)	351, 358, 516, 577, 658, 694, 711
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	4 cut(s)	183, 252, 315, 372
BspANI	GGCC	5 cut(s)	240, 281, 326, 389, 436
BspLI	GGNNCC	4 cut(s)	370, 437, 723, 742
BspPI	GGATC	4 cut(s)	511, 572, 702, 706
BspT107I	GGYRCC	1 cut(s)	368
BspTI	CTTAAG	1 cut(s)	716
BsrFI	RCCGGY	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	6 cut(s)	55, 168, 327, 384, 520, 773
BssMI	GATC	7 cut(s)	351, 358, 516, 577, 658, 694, 711
BssSI	CACGAG	1 cut(s)	424
BssT1I	CCWWGG	1 cut(s)	327
Bst2BI	CACGAG	1 cut(s)	424
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	130
BstAFI	CTTAAG	1 cut(s)	716
BstBAI	YACGTR	1 cut(s)	602
BstC8I	GCNNGC	4 cut(s)	90, 342, 530, 756
BstDEI	CTNAG	1 cut(s)	677
BstDSI	CCRYGG	2 cut(s)	327, 384
BstF5I	GGATG	3 cut(s)	72, 143, 174
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	7 cut(s)	354, 361, 519, 580, 661, 697, 714
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	7 cut(s)	351, 358, 516, 577, 658, 694, 711
BstMCI	CGRYCG	1 cut(s)	542
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 803
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	2 cut(s)	406, 806
BstSCI	CCNGG	6 cut(s)	55, 168, 276, 296, 519, 520
BstSNI	TACGTA	1 cut(s)	602
BstV1I	GCAGC	3 cut(s)	27, 356, 818
BstV2I	GAAGAC	1 cut(s)	256
BstX2I	RGATCY	5 cut(s)	516, 577, 658, 694, 711
BstYI	RGATCY	5 cut(s)	516, 577, 658, 694, 711
BsuRI	GGCC	5 cut(s)	240, 281, 326, 389, 436
BtgI	CCRYGG	2 cut(s)	327, 384
BtrI	CACGTC	1 cut(s)	234
BtsCI	GGATG	3 cut(s)	72, 143, 174
Cac8I	GCNNGC	4 cut(s)	90, 342, 530, 756
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	5 cut(s)	300, 312, 435, 727, 740
Cfr9I	CCCGGG	1 cut(s)	520
CpoI	CGGWCCG	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	47
CspI	CGGWCCG	1 cut(s)	312
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	677
DpnI	GATC	7 cut(s)	353, 360, 518, 579, 660, 696, 713
DpnII	GATC	7 cut(s)	351, 358, 516, 577, 658, 694, 711
EaeI	YGGCCR	4 cut(s)	238, 279, 324, 387
EciI	GGCGGA	2 cut(s)	172, 304
Ecl136II	GAGCTC	3 cut(s)	24, 88, 765
Eco105I	TACGTA	1 cut(s)	602
Eco130I	CCWWGG	1 cut(s)	327
Eco24I	GRGCYC	3 cut(s)	26, 90, 767
Eco47I	GGWCC	4 cut(s)	300, 312, 727, 740
Eco53kI	GAGCTC	3 cut(s)	24, 88, 765
Eco88I	CYCGRG	1 cut(s)	520
EcoICRI	GAGCTC	3 cut(s)	24, 88, 765
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	327
EcoT38I	GRGCYC	3 cut(s)	26, 90, 767
ErhI	CCWWGG	1 cut(s)	327
FaqI	GGGAC	2 cut(s)	78, 726
Fnu4HI	GCNGC	4 cut(s)	41, 252, 345, 807
FokI	GGATG	3 cut(s)	59, 130, 161
FriOI	GRGCYC	3 cut(s)	26, 90, 767
Fsp4HI	GCNGC	4 cut(s)	41, 252, 345, 807
FspBI	CTAG	4 cut(s)	44, 227, 467, 698
FspI	TGCGCA	1 cut(s)	108
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	4 cut(s)	41, 252, 345, 807
GsaI	CCCAGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	683
HaeIII	GGCC	5 cut(s)	240, 281, 326, 389, 436
HapII	CCGG	9 cut(s)	57, 237, 278, 298, 310, 341, 521, 542, 725
HhaI	GCGC	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HincII	GTYRAC	2 cut(s)	247, 646
HindII	GTYRAC	2 cut(s)	247, 646
HinfI	GANTC	5 cut(s)	420, 506, 590, 665, 673
HpaI	GTTAAC	1 cut(s)	646
HpaII	CCGG	9 cut(s)	57, 237, 278, 298, 310, 341, 521, 542, 725
Hpy166II	GTNNAC	2 cut(s)	247, 646
Hpy188I	TCNGA	1 cut(s)	774
Hpy188III	TCNNGA	5 cut(s)	467, 514, 581, 662, 698
Hpy8I	GTNNAC	2 cut(s)	247, 646
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	88, 476, 604
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	233, 601
HpyCH4V	TGCA	3 cut(s)	161, 528, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 803
HpyF3I	CTNAG	1 cut(s)	677
HpySE526I	ACGT	2 cut(s)	233, 601
HspAI	GCGC	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
KspAI	GTTAAC	1 cut(s)	646
Kzo9I	GATC	7 cut(s)	351, 358, 516, 577, 658, 694, 711
LmnI	GCTCC	6 cut(s)	85, 279, 463, 762, 770, 777
Lsp1109I	GCAGC	3 cut(s)	27, 356, 818
LweI	GCATC	2 cut(s)	118, 283
MaeI	CTAG	4 cut(s)	44, 227, 467, 698
MaeII	ACGT	2 cut(s)	233, 601
MalI	GATC	7 cut(s)	353, 360, 518, 579, 660, 696, 713
MboI	GATC	7 cut(s)	351, 358, 516, 577, 658, 694, 711
MboII	GAAGA	4 cut(s)	256, 371, 557, 668
MflI	RGATCY	5 cut(s)	516, 577, 658, 694, 711
MhlI	GDGCHC	3 cut(s)	26, 90, 767
MluCI	AATT	1 cut(s)	115
MlyI	GAGTC	4 cut(s)	429, 599, 674, 682
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	9 cut(s)	7, 80, 110, 313, 469, 685, 768, 775, 827
MroNI	GCCGGC	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	2 cut(s)	645, 717
MspA1I	CMGCKG	2 cut(s)	254, 374
MspCI	CTTAAG	1 cut(s)	716
MspI	CCGG	9 cut(s)	57, 237, 278, 298, 310, 341, 521, 542, 725
MspR9I	CCNGG	6 cut(s)	57, 170, 278, 298, 521, 522
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	323, 803
NaeI	GCCGGC	1 cut(s)	342
NciI	CCSGG	5 cut(s)	57, 278, 298, 521, 522
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	7 cut(s)	351, 358, 516, 577, 658, 694, 711
NgoMIV	GCCGGC	1 cut(s)	340
NlaIV	GGNNCC	4 cut(s)	370, 437, 723, 742
NmeAIII	GCCGAG	2 cut(s)	302, 646
NsbI	TGCGCA	1 cut(s)	108
NspI	RCATGY	2 cut(s)	406, 806
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PdiI	GCCGGC	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	4 cut(s)	42, 253, 346, 808
PleI	GAGTC	4 cut(s)	428, 598, 673, 681
PpsI	GAGTC	4 cut(s)	428, 598, 673, 681
Ppu21I	YACGTR	1 cut(s)	602
Psp124BI	GAGCTC	3 cut(s)	26, 90, 767
Psp6I	CCWGG	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	4 cut(s)	370, 437, 723, 742
PspPI	GGNCC	5 cut(s)	300, 312, 435, 727, 740
PsuI	RGATCY	5 cut(s)	516, 577, 658, 694, 711
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
Rsr2I	CGGWCCG	1 cut(s)	312
RsrII	CGGWCCG	1 cut(s)	312
SacI	GAGCTC	3 cut(s)	26, 90, 767
SaqAI	TTAA	2 cut(s)	645, 717
SatI	GCNGC	4 cut(s)	41, 252, 345, 807
Sau3AI	GATC	7 cut(s)	351, 358, 516, 577, 658, 694, 711
Sau96I	GGNCC	5 cut(s)	300, 312, 435, 727, 740
SchI	GAGTC	4 cut(s)	429, 599, 674, 682
ScrFI	CCNGG	6 cut(s)	57, 170, 278, 298, 521, 522
SduI	GDGCHC	3 cut(s)	26, 90, 767
SfaNI	GCATC	2 cut(s)	118, 283
SinI	GGWCC	4 cut(s)	300, 312, 727, 740
SmaI	CCCGGG	1 cut(s)	522
SmlI	CTYRAG	3 cut(s)	407, 512, 716
SmoI	CTYRAG	3 cut(s)	407, 512, 716
SnaBI	TACGTA	1 cut(s)	602
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	4 cut(s)	183, 252, 315, 372
SspMI	CTAG	4 cut(s)	44, 227, 467, 698
SstI	GAGCTC	3 cut(s)	26, 90, 767
StyD4I	CCNGG	6 cut(s)	55, 168, 276, 296, 519, 520
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	2 cut(s)	236, 604
TaqI	TCGA	3 cut(s)	204, 538, 668
TaqII	GACCGA	1 cut(s)	728
TasI	AATT	1 cut(s)	115
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	2 cut(s)	645, 717
Tru9I	TTAA	2 cut(s)	645, 717
TseI	GCWGC	3 cut(s)	40, 344, 806
TspDTI	ATGAA	3 cut(s)	132, 581, 586
TspMI	CCCGGG	1 cut(s)	520
Vha464I	CTTAAG	1 cut(s)	716
VpaK11BI	GGWCC	4 cut(s)	300, 312, 727, 740
XbaI	TCTAGA	2 cut(s)	466, 697
XceI	RCATGY	2 cut(s)	406, 806
XcmI	CCANNNNNNNNNTGG	2 cut(s)	58, 325
XmaI	CCCGGG	1 cut(s)	520
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	4 cut(s)	44, 227, 467, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.