Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030874.1

Orthogroup ID

OG0003264

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 552

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030874.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

aagcagaggtttatatgggtggtgcagccaccaagcaaaggaggtgctcaaggcaatgacatttcggagtatttgcctgagcggttcctggctcggactcatgacaagggtctagtggtcaccacttgggctcctcagtcggaaatcttggcacatgcatccgttggagggttcctatcgcactgcggttggaactcggcgctggagagtatactgaatggcttgccaatgatcgcatggccactatacgcggagcagaaaatggttgctacactactggtggaggagctaaaggtggcgattcgacctaaagtgttgccaacaaaagcactagcagggagggaggagattgagatgttggtgaggaagattacggagcagaaagacggagatgcaatgagagcaagagctaaagaactgaaagcaagtggggaaaaagctctctgtgtgggtggatcttctttcaacatgctgtctgaattgtcaaggctatgcaagatcaataccgaacagcagtgccagacagtagggactgatcaaattcttgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

183

Amino Acids

20.13

Weight (kDa)

8.38

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13970 FvH4_1g13990 FvH4_1g14000
rosa_chinensis	RchiOBHm_Chr2g0102291 RchiOBHm_Chr5g0049051
rosa_laevigata	RLG00000017143 RLG00000027915 RLG00000029969 RLG00000034587
rosa_multiflora	Rmu_co8035894.1_g000001 Rmu_sc0000530.1_g000029 Rmu_sc0005055.1_g000021 Rmu_sc0008757.1_g000011 Rmu_sc0030874.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032820 Rroxscaffold_2G00140590 Rroxscaffold_2G00140600 Rroxscaffold_4G00297540 Rroxscaffold_4G00322380
rosa_rugosa	Rorug01G0070700 Rorug01G0070800 Rorug01G0266200 Rorug01G0266200 Rorug02G0106200 Rorug05G0242800
rosa_samantha	Rh1AG279800 Rh1BG069800 Rh1CG263900 Rh1DG091500 Rh2BG160200 Rh2BG160300 Rh2CG159800 Rh5AG322500 Rh5BG332800 Rh5CG357900
rosa_wichuraiana	Rw1G024870 Rw5G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	211
AccII	CGCG	1 cut(s)	251
AciI	CCGC	3 cut(s)	82, 186, 251
AclWI	GGATC	1 cut(s)	463
AcoI	YGGCCR	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	540
AfiI	CCNNNNNNNGG	2 cut(s)	38, 168
AgsI	TTSAA	1 cut(s)	466
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	3 cut(s)	289, 410, 440
AluI	AGCT	3 cut(s)	289, 410, 440
Alw21I	GWGCWC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	463
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	25
ApoI	RAATTY	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	112, 373
BalI	TGGCCA	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	1 cut(s)	535
BfaI	CTAG	2 cut(s)	113, 332
BfoI	RGCGCY	1 cut(s)	203
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	89
BmiI	GGNNCC	3 cut(s)	86, 132, 173
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	167, 382
BoxI	GACNNNNGTC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 168
Bse1I	ACTGG	1 cut(s)	282
Bse3DI	GCAATG	2 cut(s)	61, 402
BseBI	CCWGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	158
BseLI	CCNNNNNNNGG	2 cut(s)	38, 168
BseMI	GCAATG	2 cut(s)	61, 402
BseMII	CTCAG	2 cut(s)	69, 149
BseNI	ACTGG	1 cut(s)	282
BseRI	GAGGAG	3 cut(s)	123, 299, 359
BseXI	GCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	2 cut(s)	38, 168
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	49, 133
Bsp143I	GATC	4 cut(s)	231, 455, 498, 535
BspACI	CCGC	3 cut(s)	82, 186, 251
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	2 cut(s)	70, 148
BspFNI	CGCG	1 cut(s)	251
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	3 cut(s)	86, 132, 173
BspPI	GGATC	1 cut(s)	463
BsrBI	CCGCTC	1 cut(s)	82
BsrDI	GCAATG	2 cut(s)	61, 402
BsrI	ACTGG	1 cut(s)	282
BssMI	GATC	4 cut(s)	231, 455, 498, 535
BssNAI	GTATAC	1 cut(s)	212
Bst1107I	GTATAC	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	526
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	78, 135
BstEII	GGTNACC	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	158
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	4 cut(s)	234, 458, 501, 538
BstMBI	GATC	4 cut(s)	231, 455, 498, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	2 cut(s)	158, 472
BstPAI	GACNNNNGTC	1 cut(s)	108
BstPI	GGTNACC	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	87
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	455
BstZ17I	GTATAC	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	158
BtsI	GCAGTG	2 cut(s)	181, 521
BtsIMutI	CAGTG	2 cut(s)	181, 521
Cac8I	GCNNGC	1 cut(s)	224
CciI	TCATGA	1 cut(s)	100
CfoI	GCGC	1 cut(s)	202
CviAII	CATG	4 cut(s)	101, 155, 237, 469
CviJI	RGCY	9 cut(s)	28, 92, 131, 222, 241, 289, 410, 440, 490
CviKI_1	RGCY	9 cut(s)	28, 92, 131, 222, 241, 289, 410, 440, 490
DdeI	CTNAG	2 cut(s)	78, 135
DpnI	GATC	4 cut(s)	233, 457, 500, 537
DpnII	GATC	4 cut(s)	231, 455, 498, 535
EaeI	YGGCCR	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	133
Eco91I	GGTNACC	1 cut(s)	118
EcoO65I	GGTNACC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	133
FaeI	CATG	4 cut(s)	104, 158, 240, 472
FaiI	YATR	9 cut(s)	14, 16, 102, 156, 212, 238, 247, 470, 493
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	4 cut(s)	100, 154, 236, 468
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	1 cut(s)	145
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	2 cut(s)	113, 332
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	224
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	4 cut(s)	104, 158, 240, 472
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	2 cut(s)	97, 301
HphI	GGTGA	2 cut(s)	112, 373
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	4 cut(s)	67, 96, 142, 478
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	1 cut(s)	212
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4V	TGCA	4 cut(s)	25, 158, 395, 495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	2 cut(s)	78, 135
Hsp92II	CATG	4 cut(s)	104, 158, 240, 472
HspAI	GCGC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	231, 455, 498, 535
LmnI	GCTCC	4 cut(s)	136, 253, 286, 376
LpnPI	CCDG	7 cut(s)	74, 90, 101, 188, 263, 321, 533
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	2 cut(s)	167, 382
MaeI	CTAG	2 cut(s)	113, 332
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	4 cut(s)	233, 457, 500, 537
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	4 cut(s)	231, 455, 498, 535
MboII	GAAGA	2 cut(s)	379, 450
MflI	RGATCY	1 cut(s)	455
MhlI	GDGCHC	2 cut(s)	49, 133
MlsI	TGGCCA	1 cut(s)	241
MluCI	AATT	2 cut(s)	479, 540
MluNI	TGGCCA	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	3 cut(s)	120, 145, 170
MnlI	CCTC	7 cut(s)	35, 144, 161, 277, 333, 337, 357
Mox20I	TGGCCA	1 cut(s)	241
Mph1103I	ATGCAT	1 cut(s)	160
MscI	TGGCCA	1 cut(s)	241
Msp20I	TGGCCA	1 cut(s)	241
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	401
NdeII	GATC	4 cut(s)	231, 455, 498, 535
NlaIII	CATG	4 cut(s)	104, 158, 240, 472
NlaIV	GGNNCC	3 cut(s)	86, 132, 173
NmeAIII	GCCGAG	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	160
NspI	RCATGY	2 cut(s)	158, 472
PagI	TCATGA	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PshAI	GACNNNNGTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	87
PspEI	GGTNACC	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	86, 132, 173
PsuI	RGATCY	1 cut(s)	455
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	4 cut(s)	231, 455, 498, 535
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	49, 133
SetI	ASST	7 cut(s)	11, 46, 291, 297, 310, 412, 442
SfaNI	GCATC	2 cut(s)	167, 382
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	2 cut(s)	479, 540
SsiI	CCGC	3 cut(s)	82, 186, 251
SspMI	CTAG	2 cut(s)	113, 332
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	526
TaqI	TCGA	1 cut(s)	304
TasI	AATT	2 cut(s)	479, 540
TfiI	GAWTC	1 cut(s)	301
TscAI	CASTG	2 cut(s)	188, 521
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	118
TspGWI	ACGGA	3 cut(s)	151, 389, 402
TspRI	CASTG	2 cut(s)	188, 521
XapI	RAATTY	1 cut(s)	540
XceI	RCATGY	2 cut(s)	158, 472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	234
XmiI	GTMKAC	1 cut(s)	211
XspI	CTAG	2 cut(s)	113, 332
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.