FvH4_1g23740

Zeaxanthin epoxidase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
15594656 .. 15598539
3884 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23740.t1

Sequence Viewer

Length: 1221 bp
ATGGGAACAACGGTGGAGGATGTGGTGATAGTGGGAGGAGGCATAGCAGGGCTAGCGACGGCGGTGGCGCTGAAGAGAGCTGGAATAGAAGCATTGGTGTTGGAGAGATCGGAAGGGCTTCGAGCCACCGGTGCAGCTTTGACTCTATTCCCAAACGCCTGGTTTGCTCTTGATGCCTTGGGGGTTTCTCAGAAGCTTGCTTCGTATGCCCACTCTCGCAAGCTTTATATAACTGATCTTGACACTGGAGAAGTTCAAGAAGTCCCTTTCATCAAACCCAATGGTGATGCAGTTGGACCCAGATCAGTACACAGGAAAGCCTTGCTTGAGGCTTTGGCAGATGAATTACCGGTTCATTCAATCCGTTTCTCTTCCAAGATCTCTGCTATCGACACCCAACAACATGAAGGTTCATCCATTGCCATTGTTCACATGGAAAATGGAACTGTCATTAAAGCAAAGGTTCTCATTGGGTGTGATGGGGTTCACTCAGTGGTGTCACGCTGGTTAGGTCTCCGTGATCCAGTTCTTTCAGGTCGATCAGCTGTTCGCGGATTGGCTGTGTATCCTCAGGGCCATGGACTCGAGCACAATGTGCGACAGTACGTAGGAACAGGCAAAAGAGCTGGTATTGTTCCCCTCACCGACAAAGAGATCTACTGGTTCATCAGTTACACATCTCCGGCTAAAGAGACCTCCTTGGAAGATTTTCCGGAAGATATTCAAAAAGAAGTACTAGAGAATTATGGCAAGGACATCCCAACTATATTCTCCGATGTTGTGAAGCAGTCAGATCTTTCAACATTAACACGGGCTCCACTGAAGTATAGGTATCCCTTGAACGTAGTATTTGGAACCTTAAGCAAGCAAAACATTACGGTAGCCGGTGATGCCATGCACCCCATGACACCTGATCTAGCTCAGGGTGGTTGCTCGTCATTAGAAGATGCAGTGATCTTAGGCAGGCATATTGGGAGATACTTTGTGCAGAACGGACAAGTACTTGTGGCGAAAGAGATTAGTGAAGTGCTGGGCAAATATGTGGAAGAAAGAAGGTGGCGCGTCGCTTTGTTGATCACGGGGTCTTATATATCAGGATGGGTGCAGCAGGCGGGCTCTGGATGGGGTGGGAAATTCTTGAGAGATGTCATATTTTACAAGTTCCTTTACCTTAAGATGGTTAGATACGTAAATTATGACTGTGGAAAACTGGAGTTCTAG

Protein Analysis

407

Amino Acids

44.42

Weight (kDa)

7.72

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 7 - 354 1.2e-26 FAD binding domain
DAO PF01266 7 - 71 9.5e-09 FAD dependent oxidoreductase
FAD_oxidored PF12831 7 - 159 6.2e-06 FAD dependent oxidoreductase
NAD_binding_8 PF13450 10 - 40 6.6e-06 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 552, 1062
AccIII TCCGGA 1 cut(s) 712
AciI CCGC 3 cut(s) 62, 552, 1112
AclWI GGATC 1 cut(s) 515
AcsI RAATTY 1 cut(s) 1133
AcuI CTGAAG 2 cut(s) 92, 842
AdeI CACNNNGTG 2 cut(s) 493, 595
AfaI GTAC 4 cut(s) 309, 605, 735, 1002
AfiI CCNNNNNNNGG 1 cut(s) 1177
AflII CTTAAG 2 cut(s) 859, 1172
AgeI ACCGGT 2 cut(s) 128, 349
AgsI TTSAA 5 cut(s) 257, 360, 725, 801, 841
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 7 cut(s) 80, 137, 196, 223, 545, 626, 920
AluI AGCT 7 cut(s) 80, 137, 196, 223, 545, 626, 920
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 2 cut(s) 518, 686
AlwI GGATC 1 cut(s) 515
Ama87I CYCGRG 1 cut(s) 584
Aor13HI TCCGGA 1 cut(s) 712
AoxI GGCC 1 cut(s) 574
ApeKI GCWGC 2 cut(s) 134, 1105
ApoI RAATTY 1 cut(s) 1133
AsiGI ACCGGT 2 cut(s) 128, 349
Asp700I GAANNNNTTC 3 cut(s) 117, 708, 720
AspLEI GCGC 2 cut(s) 70, 1062
AspS9I GGNCC 2 cut(s) 296, 574
AsuHPI GGTGA 4 cut(s) 37, 296, 634, 899
AsuNHI GCTAGC 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 584
AvaII GGWCC 1 cut(s) 296
AxyI CCTNAGG 1 cut(s) 570
BanII GRGCYC 2 cut(s) 817, 1118
Bbv12I GWGCWC 1 cut(s) 591
BbvI GCAGC 2 cut(s) 146, 1117
BccI CCATC 4 cut(s) 473, 1092, 1116, 1171
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 160
BciVI GTATCC 2 cut(s) 576, 843
BclI TGATCA 1 cut(s) 1074
BcoDI GTCTC 2 cut(s) 518, 686
BfaI CTAG 4 cut(s) 53, 737, 917, 1219
BfoI RGCGCY 1 cut(s) 71
BfrI CTTAAG 2 cut(s) 859, 1172
BfuI GTATCC 2 cut(s) 576, 843
BglII AGATCT 3 cut(s) 378, 654, 793
BisI GCNGC 2 cut(s) 135, 1106
BlsI GCNGC 2 cut(s) 136, 1107
BmcAI AGTACT 2 cut(s) 735, 1002
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 296
BmeT110I CYCGRG 1 cut(s) 584
BmgT120I GGNCC 2 cut(s) 296, 574
BmiI GGNNCC 3 cut(s) 298, 816, 856
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 4 cut(s) 163, 277, 880, 937
BmtI GCTAGC 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 921
BpuEI CTTGAG 2 cut(s) 347, 1159
BsaAI YACGTR 2 cut(s) 607, 1189
BsaI GGTCTC 2 cut(s) 518, 686
BsaJI CCNNGG 3 cut(s) 177, 577, 699
BsaWI WCCGGW 3 cut(s) 128, 349, 712
BsaXI ACNNNNNCTCC 2 cut(s) 799, 829
Bsc4I CCNNNNNNNGG 1 cut(s) 1177
Bse118I RCCGGY 3 cut(s) 128, 349, 884
Bse1I ACTGG 4 cut(s) 250, 524, 665, 1215
Bse21I CCTNAGG 1 cut(s) 570
Bse3DI GCAATG 1 cut(s) 417
BseAI TCCGGA 1 cut(s) 712
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 3 cut(s) 177, 577, 699
BseGI GGATG 5 cut(s) 25, 413, 756, 1103, 1127
BseLI CCNNNNNNNGG 1 cut(s) 1177
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 4 cut(s) 203, 504, 584, 935
BseNI ACTGG 4 cut(s) 250, 524, 665, 1215
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 2 cut(s) 146, 1117
BseYI CCCAGC 1 cut(s) 1030
BsgI GTGCAG 3 cut(s) 153, 1007, 1124
Bsh1236I CGCG 2 cut(s) 552, 1062
BshFI GGCC 1 cut(s) 576
BshTI ACCGGT 2 cut(s) 128, 349
BsiHKAI GWGCWC 1 cut(s) 591
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 5 cut(s) 129, 350, 683, 713, 885
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 1177
BsmAI GTCTC 2 cut(s) 518, 686
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 576
Bso31I GGTCTC 2 cut(s) 518, 686
BsoBI CYCGRG 1 cut(s) 584
Bsp1286I GDGCHC 3 cut(s) 591, 817, 1118
Bsp13I TCCGGA 1 cut(s) 712
Bsp19I CCATGG 1 cut(s) 577
BspACI CCGC 3 cut(s) 62, 552, 1112
BspANI GGCC 1 cut(s) 576
BspCNI CTCAG 4 cut(s) 202, 503, 583, 934
BspEI TCCGGA 1 cut(s) 712
BspFNI CGCG 2 cut(s) 552, 1062
BspLI GGNNCC 3 cut(s) 298, 816, 856
BspOI GCTAGC 1 cut(s) 56
BspPI GGATC 1 cut(s) 515
BspTI CTTAAG 2 cut(s) 859, 1172
BspTNI GGTCTC 2 cut(s) 518, 686
BsrDI GCAATG 1 cut(s) 417
BsrFI RCCGGY 3 cut(s) 128, 349, 884
BsrI ACTGG 4 cut(s) 250, 524, 665, 1215
BssAI RCCGGY 3 cut(s) 128, 349, 884
BssECI CCNNGG 3 cut(s) 177, 577, 699
BssT1I CCWWGG 3 cut(s) 177, 577, 699
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 5 cut(s) 13, 448, 603, 880, 1202
Bst6I CTCTTC 2 cut(s) 68, 376
BstAFI CTTAAG 2 cut(s) 859, 1172
BstAPI GCANNNNNTGC 1 cut(s) 595
BstBAI YACGTR 2 cut(s) 607, 1189
BstC8I GCNNGC 7 cut(s) 54, 198, 221, 866, 965, 1110, 1114
BstDEI CTNAG 5 cut(s) 189, 490, 570, 921, 958
BstDSI CCRYGG 1 cut(s) 577
BstF5I GGATG 5 cut(s) 25, 413, 756, 1103, 1127
BstFNI CGCG 2 cut(s) 552, 1062
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 2 cut(s) 70, 1062
BstMAI GTCTC 2 cut(s) 518, 686
BstMWI GCNNNNNNNGC 7 cut(s) 53, 131, 164, 173, 206, 595, 890
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 158
BstSNI TACGTA 2 cut(s) 607, 1189
BstUI CGCG 2 cut(s) 552, 1062
BstV1I GCAGC 2 cut(s) 146, 1117
BstX2I RGATCY 3 cut(s) 378, 654, 793
BstXI CCANNNNNNTGG 1 cut(s) 159
BstYI RGATCY 3 cut(s) 378, 654, 793
Bsu36I CCTNAGG 1 cut(s) 570
BsuI GTATCC 2 cut(s) 576, 843
BsuRI GGCC 1 cut(s) 576
BtgI CCRYGG 1 cut(s) 577
BtsCI GGATG 5 cut(s) 25, 413, 756, 1103, 1127
BtsI GCAGTG 1 cut(s) 957
BtsIMutI CAGTG 4 cut(s) 243, 498, 818, 957
Cac8I GCNNGC 7 cut(s) 54, 198, 221, 866, 965, 1110, 1114
CfoI GCGC 2 cut(s) 70, 1062
Cfr10I RCCGGY 3 cut(s) 128, 349, 884
Cfr13I GGNCC 2 cut(s) 296, 574
CseI GACGC 1 cut(s) 1051
Csp6I GTAC 4 cut(s) 308, 604, 734, 1001
CspAI ACCGGT 2 cut(s) 128, 349
CviAII CATG 5 cut(s) 404, 433, 578, 895, 904
CviQI GTAC 4 cut(s) 308, 604, 734, 1001
DdeI CTNAG 5 cut(s) 189, 490, 570, 921, 958
DraIII CACNNNGTG 2 cut(s) 493, 595
Eam1104I CTCTTC 2 cut(s) 68, 376
EarI CTCTTC 2 cut(s) 68, 376
Eco105I TACGTA 2 cut(s) 607, 1189
Eco130I CCWWGG 3 cut(s) 177, 577, 699
Eco24I GRGCYC 2 cut(s) 817, 1118
Eco31I GGTCTC 2 cut(s) 518, 686
Eco47I GGWCC 1 cut(s) 296
Eco57I CTGAAG 2 cut(s) 92, 842
Eco81I CCTNAGG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 584
EcoRII CCWGG 1 cut(s) 158
EcoT14I CCWWGG 3 cut(s) 177, 577, 699
EcoT38I GRGCYC 2 cut(s) 817, 1118
ErhI CCWWGG 3 cut(s) 177, 577, 699
FaeI CATG 5 cut(s) 407, 436, 581, 898, 907
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FaqI GGGAC 1 cut(s) 248
FatI CATG 5 cut(s) 403, 432, 577, 894, 903
FauI CCCGC 1 cut(s) 1105
FbaI TGATCA 1 cut(s) 1074
Fnu4HI GCNGC 2 cut(s) 135, 1106
FokI GGATG 5 cut(s) 32, 400, 743, 1110, 1134
FriOI GRGCYC 2 cut(s) 817, 1118
Fsp4HI GCNGC 2 cut(s) 135, 1106
FspBI CTAG 4 cut(s) 53, 737, 917, 1219
GlaI GCGC 2 cut(s) 69, 1061
GluI GCNGC 2 cut(s) 135, 1106
GsaI CCCAGC 1 cut(s) 1034
GsuI CTGGAG 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 1 cut(s) 576
HapII CCGG 5 cut(s) 129, 350, 683, 713, 885
HgaI GACGC 1 cut(s) 1051
HhaI GCGC 2 cut(s) 70, 1062
Hin1II CATG 5 cut(s) 407, 436, 581, 898, 907
Hin6I GCGC 2 cut(s) 68, 1060
HinP1I GCGC 2 cut(s) 68, 1060
HindIII AAGCTT 2 cut(s) 194, 221
HinfI GANTC 2 cut(s) 142, 582
HpaII CCGG 5 cut(s) 129, 350, 683, 713, 885
HphI GGTGA 4 cut(s) 37, 296, 634, 899
Hpy166II GTNNAC 3 cut(s) 310, 430, 487
Hpy188I TCNGA 4 cut(s) 112, 192, 775, 793
Hpy188III TCNNGA 7 cut(s) 170, 239, 257, 713, 1095, 1119, 1138
Hpy8I GTNNAC 3 cut(s) 310, 430, 487
Hpy99I CGWCG 2 cut(s) 61, 1067
HpyAV CCTTC 3 cut(s) 107, 401, 1047
HpyCH4III ACNGT 5 cut(s) 13, 448, 603, 880, 1202
HpyCH4IV ACGT 3 cut(s) 606, 843, 1188
HpyCH4V TGCA 6 cut(s) 134, 290, 898, 950, 988, 1105
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 131, 164, 173, 206, 595, 890
HpyF3I CTNAG 5 cut(s) 189, 490, 570, 921, 958
HpySE526I ACGT 3 cut(s) 606, 843, 1188
Hsp92II CATG 5 cut(s) 407, 436, 581, 898, 907
HspAI GCGC 2 cut(s) 68, 1060
Kpn2I TCCGGA 1 cut(s) 712
Ksp22I TGATCA 1 cut(s) 1074
LmnI GCTCC 1 cut(s) 820
Lsp1109I GCAGC 2 cut(s) 146, 1117
LweI GCATC 4 cut(s) 163, 277, 880, 937
MaeI CTAG 4 cut(s) 53, 737, 917, 1219
MaeII ACGT 3 cut(s) 606, 843, 1188
MaeIII GTNAC 2 cut(s) 498, 671
MboII GAAGA 6 cut(s) 85, 363, 716, 728, 956, 1058
MflI RGATCY 3 cut(s) 378, 654, 793
MhlI GDGCHC 3 cut(s) 591, 817, 1118
MluCI AATT 4 cut(s) 344, 742, 1133, 1192
MlyI GAGTC 2 cut(s) 136, 576
MmeI TCCRAC 2 cut(s) 81, 274
MnlI CCTC 7 cut(s) 10, 29, 32, 322, 579, 650, 706
MroI TCCGGA 1 cut(s) 712
MroXI GAANNNNTTC 3 cut(s) 117, 708, 720
MseI TTAA 4 cut(s) 453, 806, 860, 1173
MspA1I CMGCKG 1 cut(s) 545
MspCI CTTAAG 2 cut(s) 859, 1172
MspI CCGG 5 cut(s) 129, 350, 683, 713, 885
MspR9I CCNGG 1 cut(s) 160
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 2 cut(s) 552, 1062
MwoI GCNNNNNNNGC 7 cut(s) 53, 131, 164, 173, 206, 595, 890
NcoI CCATGG 1 cut(s) 577
NheI GCTAGC 1 cut(s) 52
NlaIII CATG 5 cut(s) 407, 436, 581, 898, 907
NlaIV GGNNCC 3 cut(s) 298, 816, 856
NmuCI GTSAC 1 cut(s) 498
PaeR7I CTCGAG 1 cut(s) 584
PdmI GAANNNNTTC 3 cut(s) 117, 708, 720
PinAI ACCGGT 2 cut(s) 128, 349
PkrI GCNGC 2 cut(s) 136, 1107
PleI GAGTC 2 cut(s) 136, 576
PpsI GAGTC 2 cut(s) 136, 576
Ppu21I YACGTR 2 cut(s) 607, 1189
Psp6I CCWGG 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 1030
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 3 cut(s) 298, 816, 856
PspPI GGNCC 2 cut(s) 296, 574
PspXI VCTCGAGB 1 cut(s) 584
PsuI RGATCY 3 cut(s) 378, 654, 793
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 4 cut(s) 309, 605, 735, 1002
RsaNI GTAC 4 cut(s) 308, 604, 734, 1001
SaqAI TTAA 4 cut(s) 453, 806, 860, 1173
SatI GCNGC 2 cut(s) 135, 1106
Sau96I GGNCC 2 cut(s) 296, 574
ScaI AGTACT 2 cut(s) 735, 1002
SchI GAGTC 2 cut(s) 136, 576
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 3 cut(s) 591, 817, 1118
SfaNI GCATC 4 cut(s) 163, 277, 880, 937
Sfr274I CTCGAG 1 cut(s) 584
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 1 cut(s) 296
SlaI CTCGAG 1 cut(s) 584
SmlI CTYRAG 5 cut(s) 326, 584, 859, 1138, 1172
SmoI CTYRAG 5 cut(s) 326, 584, 859, 1138, 1172
SnaBI TACGTA 2 cut(s) 607, 1189
Sse9I AATT 4 cut(s) 344, 742, 1133, 1192
SsiI CCGC 3 cut(s) 62, 552, 1112
SspMI CTAG 4 cut(s) 53, 737, 917, 1219
StyD4I CCNGG 1 cut(s) 158
StyI CCWWGG 3 cut(s) 177, 577, 699
TaaI ACNGT 5 cut(s) 13, 448, 603, 880, 1202
TaiI ACGT 3 cut(s) 609, 846, 1191
TaqI TCGA 4 cut(s) 121, 390, 538, 585
TasI AATT 4 cut(s) 344, 742, 1133, 1192
TatI WGTACW 3 cut(s) 307, 733, 1000
Tru1I TTAA 4 cut(s) 453, 806, 860, 1173
Tru9I TTAA 4 cut(s) 453, 806, 860, 1173
TscAI CASTG 4 cut(s) 250, 498, 825, 957
TseFI GTSAC 1 cut(s) 498
TseI GCWGC 2 cut(s) 134, 1105
Tsp45I GTSAC 1 cut(s) 498
TspDTI ATGAA 6 cut(s) 259, 344, 357, 402, 420, 655
TspGWI ACGGA 3 cut(s) 353, 506, 1008
TspRI CASTG 4 cut(s) 250, 498, 825, 957
Vha464I CTTAAG 2 cut(s) 859, 1172
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 1 cut(s) 1133
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XhoI CTCGAG 1 cut(s) 584
XmnI GAANNNNTTC 3 cut(s) 117, 708, 720
XspI CTAG 4 cut(s) 53, 737, 917, 1219
ZrmI AGTACT 2 cut(s) 735, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.