Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001290

Physical Location & Seq

Genomic Coordinates Reverse (-)

58389967 .. 58396428

Gene Structure 6462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGCACAAGTGTGGAGGATGTGGTGATAATATGTGGAGGGATAGCGGGTGGCGACGAGCGGTGGCGAAGAGAGGCTGGAATAGAAGCGTTGGTGTTGGAGAGATCGGAAGGGCTGCGAACTACGGGTGCAGCCTTGACTCTATTCTTTAACGCCTGGTGTGCTCTTGATGCCTTGGGGGTTTCTCACAAGCTTGCTTCTTATACCCCCTCTCTCAATGATGTAGTTGGACCAAGATCAGTACATCGAAAAGCCTTGCTCGAGGCTTTGGCAGATGAATTATCGGTTCATTCAATCCAATTCTCTTCCAAGTTCTCTACTATCGAAACCCAACAACATGAAAGTTCATCCATTGCCATTGTTCACATGGAAAATGGAACTGTCATTAAAGCAAAGGTTCTCATAGGGTGTGACGGGGTTCACTTAGCGGTCTCACGCTGGTTAGGACTCCGTGAACTAGTCTTTTCAGGGACCTCCCTAGCTGAAGATCTTGAAGATATACAAAAAGTACTTGAGAATTATGCCAAGGACCTCCCACCTATATACTTAGATGTTGTGCAGCACGCAGATCTTTCGACATTAACATGGGCTCCGTTGATGTTTAGGTACCCCTGGAACGTAGTATTTGGAAACTTAAGCAAGCAAAACATCATGGTAGCTGGCGATGCCATGCACCCTATGACCCCTGATCTAGCACAAGGGGATTGCTCAGCATTAGAAGATGCAGTGATCTTAGGCAGGCATATCGAGACATCCTTTGTACAGAATGGACAACTGGGGTGTGCTCGGGACAGGTTGATAAGGTCACTTAGGCATGAAGCAAGCATATCTGCTAGGTTTCCATTGCAAGGAGAAGGGTGTCTAGAGAAGAACGATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

293

Amino Acids

31.93

Weight (kDa)

5.27

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001290)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23740 FvH4_1g23750 FvH4_1g23770
malus_domestica	MD11G1231700.v1.1 MD11G1231900.v1.1
prunus_persica	Prupe.6G162100_v2.0.a1
pyrus_communis	pycom11g20520
rosa_chinensis	RchiOBHm_Chr2g0119591 RchiOBHm_Chr2g0119621 RchiOBHm_Chr2g0119641 RchiOBHm_Chr5g0013091
rosa_laevigata	RLG00000018140 RLG00000018142 RLG00000018474 RLG00000018477 RLG00000018479 RLG00000018481 RLG00000018482 RLG00000031985
rosa_multiflora	Rmu_sc0000825.1_g000006 Rmu_sc0000825.1_g000015 Rmu_sc0003158.1_g000005 Rmu_sc0003892.1_g000012 Rmu_sc0027906.1_g000001 Rmu_sc0040685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063490 Rroxscaffold_2G00124140 Rroxscaffold_2G00124230 Rroxscaffold_2G00124240 Rroxscaffold_2G00124250
rosa_rugosa	Rorug02G0222300 Rorug02G0222400 Rorug02G0222400 Rorug02G0222400 Rorug02G0222500.1 Rorug02G0223100 Rorug05G0007200
rosa_samantha	Rh2AG279800 Rh2AG280300 Rh2BG291500 Rh2BG291900 Rh2DG286500 Rh2DG286900 Rh2DG287300 Rh2DG305700 Rh2DG305900 Rh2DG306000 Rh5AG101300 Rh5BG097800 Rh5CG109900 Rh5DG096900
rosa_wichuraiana	Rw2G022360 Rw2G022400 Rw2G022410 Rw5G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	606
AccB1I	GGYRCC	1 cut(s)	606
AccBSI	CCGCTC	1 cut(s)	61
AciI	CCGC	3 cut(s)	47, 61, 428
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	4 cut(s)	243, 510, 608, 762
AfiI	CCNNNNNNNGG	1 cut(s)	848
AflII	CTTAAG	1 cut(s)	634
AgsI	TTSAA	2 cut(s)	294, 494
AhlI	ACTAGT	1 cut(s)	457
AjnI	CCWGG	2 cut(s)	155, 611
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	3 cut(s)	193, 482, 659
AluI	AGCT	3 cut(s)	193, 482, 659
Alw21I	GWGCWC	2 cut(s)	166, 787
Alw26I	GTCTC	2 cut(s)	436, 743
Ama87I	CYCGRG	2 cut(s)	260, 786
ApeKI	GCWGC	3 cut(s)	115, 131, 559
Asp718I	GGTACC	1 cut(s)	606
AspS9I	GGNCC	3 cut(s)	230, 471, 529
AsuHPI	GGTGA	1 cut(s)	37
AvaI	CYCGRG	2 cut(s)	260, 786
AvaII	GGWCC	3 cut(s)	230, 471, 529
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	606
BanII	GRGCYC	1 cut(s)	592
Bbv12I	GWGCWC	2 cut(s)	166, 787
BbvI	GCAGC	3 cut(s)	102, 143, 571
BccI	CCATC	1 cut(s)	869
BcgI	CGANNNNNNTGC	4 cut(s)	555, 589, 727, 761
BciT130I	CCWGG	2 cut(s)	157, 613
BcoDI	GTCTC	2 cut(s)	436, 743
BcuI	ACTAGT	1 cut(s)	457
BfaI	CTAG	5 cut(s)	458, 479, 692, 834, 863
BfrI	CTTAAG	1 cut(s)	634
BglII	AGATCT	2 cut(s)	487, 568
BisI	GCNGC	3 cut(s)	116, 132, 560
BlpI	GCTNAGC	1 cut(s)	709
BlsI	GCNGC	3 cut(s)	117, 133, 561
BmcAI	AGTACT	1 cut(s)	510
Bme1390I	CCNGG	2 cut(s)	157, 613
Bme18I	GGWCC	3 cut(s)	230, 471, 529
BmeT110I	CYCGRG	2 cut(s)	260, 786
BmgT120I	GGNCC	3 cut(s)	230, 471, 529
BmiI	GGNNCC	3 cut(s)	472, 591, 608
BmrFI	CCNGG	2 cut(s)	157, 613
BmrI	ACTGGG	1 cut(s)	785
BmsI	GCATC	3 cut(s)	160, 655, 712
BmuI	ACTGGG	1 cut(s)	785
Bpu1102I	GCTNAGC	1 cut(s)	709
BpuEI	CTTGAG	1 cut(s)	533
BsaI	GGTCTC	1 cut(s)	436
BsaJI	CCNNGG	3 cut(s)	174, 525, 611
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	1 cut(s)	848
Bse1I	ACTGG	1 cut(s)	780
Bse3DI	GCAATG	2 cut(s)	351, 842
BseBI	CCWGG	2 cut(s)	157, 613
BseDI	CCNNGG	3 cut(s)	174, 525, 611
BseGI	GGATG	3 cut(s)	25, 347, 752
BseLI	CCNNNNNNNGG	1 cut(s)	848
BseMI	GCAATG	2 cut(s)	351, 842
BseMII	CTCAG	1 cut(s)	723
BseNI	ACTGG	1 cut(s)	780
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	102, 143, 571
BsgI	GTGCAG	2 cut(s)	150, 578
BshNI	GGYRCC	1 cut(s)	606
BsiHKAI	GWGCWC	2 cut(s)	166, 787
BsiHKCI	CYCGRG	2 cut(s)	260, 786
BslFI	GGGAC	2 cut(s)	484, 803
BslI	CCNNNNNNNGG	1 cut(s)	848
BsmAI	GTCTC	2 cut(s)	436, 743
BsmFI	GGGAC	2 cut(s)	484, 803
Bso31I	GGTCTC	1 cut(s)	436
BsoBI	CYCGRG	2 cut(s)	260, 786
Bsp1286I	GDGCHC	4 cut(s)	8, 166, 592, 787
Bsp1407I	TGTACA	1 cut(s)	760
Bsp143I	GATC	6 cut(s)	104, 236, 487, 568, 688, 729
Bsp1720I	GCTNAGC	1 cut(s)	709
BspACI	CCGC	3 cut(s)	47, 61, 428
BspCNI	CTCAG	1 cut(s)	722
BspLI	GGNNCC	3 cut(s)	472, 591, 608
BspT107I	GGYRCC	1 cut(s)	606
BspTI	CTTAAG	1 cut(s)	634
BspTNI	GGTCTC	1 cut(s)	436
BsrBI	CCGCTC	1 cut(s)	61
BsrDI	GCAATG	2 cut(s)	351, 842
BsrGI	TGTACA	1 cut(s)	760
BsrI	ACTGG	1 cut(s)	780
BssECI	CCNNGG	3 cut(s)	174, 525, 611
BssMI	GATC	6 cut(s)	104, 236, 487, 568, 688, 729
BssT1I	CCWWGG	2 cut(s)	174, 525
Bst2UI	CCWGG	2 cut(s)	157, 613
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	2 cut(s)	64, 310
BstAFI	CTTAAG	1 cut(s)	634
BstAUI	TGTACA	1 cut(s)	760
BstC8I	GCNNGC	6 cut(s)	195, 564, 641, 661, 740, 823
BstDEI	CTNAG	5 cut(s)	424, 547, 709, 733, 809
BstF5I	GGATG	3 cut(s)	25, 347, 752
BstKTI	GATC	6 cut(s)	107, 239, 490, 571, 691, 732
BstMAI	GTCTC	2 cut(s)	436, 743
BstMBI	GATC	6 cut(s)	104, 236, 487, 568, 688, 729
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 170, 665
BstNI	CCWGG	2 cut(s)	157, 613
BstSCI	CCNGG	2 cut(s)	155, 611
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	3 cut(s)	102, 143, 571
BstX2I	RGATCY	2 cut(s)	487, 568
BstYI	RGATCY	2 cut(s)	487, 568
BtgZI	GCGATG	1 cut(s)	678
BtsCI	GGATG	3 cut(s)	25, 347, 752
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	1 cut(s)	732
Cac8I	GCNNGC	6 cut(s)	195, 564, 641, 661, 740, 823
Cfr13I	GGNCC	3 cut(s)	230, 471, 529
Csp6I	GTAC	4 cut(s)	242, 509, 607, 761
CviAII	CATG	6 cut(s)	338, 367, 585, 652, 670, 815
CviJI	RGCY	9 cut(s)	77, 115, 134, 193, 254, 266, 482, 590, 659
CviKI_1	RGCY	9 cut(s)	77, 115, 134, 193, 254, 266, 482, 590, 659
CviQI	GTAC	4 cut(s)	242, 509, 607, 761
DdeI	CTNAG	5 cut(s)	424, 547, 709, 733, 809
DpnI	GATC	6 cut(s)	106, 238, 489, 570, 690, 731
DpnII	GATC	6 cut(s)	104, 236, 487, 568, 688, 729
Eam1104I	CTCTTC	2 cut(s)	64, 310
EarI	CTCTTC	2 cut(s)	64, 310
Eco130I	CCWWGG	2 cut(s)	174, 525
Eco24I	GRGCYC	1 cut(s)	592
Eco31I	GGTCTC	1 cut(s)	436
Eco47I	GGWCC	3 cut(s)	230, 471, 529
Eco57I	CTGAAG	1 cut(s)	504
Eco88I	CYCGRG	2 cut(s)	260, 786
EcoO109I	RGGNCCY	2 cut(s)	471, 529
EcoRII	CCWGG	2 cut(s)	155, 611
EcoT14I	CCWWGG	2 cut(s)	174, 525
EcoT38I	GRGCYC	1 cut(s)	592
ErhI	CCWWGG	2 cut(s)	174, 525
FaeI	CATG	6 cut(s)	341, 370, 588, 655, 673, 818
FaqI	GGGAC	2 cut(s)	484, 803
FatI	CATG	6 cut(s)	337, 366, 584, 651, 669, 814
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	116, 132, 560
FokI	GGATG	3 cut(s)	32, 334, 739
FriOI	GRGCYC	1 cut(s)	592
Fsp4HI	GCNGC	3 cut(s)	116, 132, 560
FspBI	CTAG	5 cut(s)	458, 479, 692, 834, 863
GluI	GCNGC	3 cut(s)	116, 132, 560
Hin1II	CATG	6 cut(s)	341, 370, 588, 655, 673, 818
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	2 cut(s)	139, 447
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	3 cut(s)	364, 421, 455
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	5 cut(s)	167, 491, 748, 788, 863
Hpy8I	GTNNAC	3 cut(s)	364, 421, 455
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	104, 848
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	5 cut(s)	131, 559, 673, 725, 847
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 170, 665
HpyF3I	CTNAG	5 cut(s)	424, 547, 709, 733, 809
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	6 cut(s)	341, 370, 588, 655, 673, 818
KpnI	GGTACC	1 cut(s)	610
Kzo9I	GATC	6 cut(s)	104, 236, 487, 568, 688, 729
LmnI	GCTCC	1 cut(s)	595
Lsp1109I	GCAGC	3 cut(s)	102, 143, 571
LweI	GCATC	3 cut(s)	160, 655, 712
MaeI	CTAG	5 cut(s)	458, 479, 692, 834, 863
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	2 cut(s)	410, 804
MalI	GATC	6 cut(s)	106, 238, 489, 570, 690, 731
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	6 cut(s)	104, 236, 487, 568, 688, 729
MboII	GAAGA	6 cut(s)	81, 297, 497, 506, 731, 880
MflI	RGATCY	2 cut(s)	487, 568
MhlI	GDGCHC	4 cut(s)	8, 166, 592, 787
MluCI	AATT	3 cut(s)	278, 299, 517
MlyI	GAGTC	2 cut(s)	133, 441
MmeI	TCCRAC	2 cut(s)	78, 208
MnlI	CCTC	7 cut(s)	10, 32, 67, 220, 256, 484, 542
MseI	TTAA	4 cut(s)	150, 387, 581, 635
MslI	CAYNNNNRTG	2 cut(s)	11, 583
MspCI	CTTAAG	1 cut(s)	634
MspR9I	CCNGG	2 cut(s)	157, 613
MvaI	CCWGG	2 cut(s)	157, 613
MwoI	GCNNNNNNNGC	3 cut(s)	161, 170, 665
NdeII	GATC	6 cut(s)	104, 236, 487, 568, 688, 729
NlaIII	CATG	6 cut(s)	341, 370, 588, 655, 673, 818
NlaIV	GGNNCC	3 cut(s)	472, 591, 608
NmuCI	GTSAC	2 cut(s)	410, 804
OliI	CACNNNNGTG	1 cut(s)	11
PaeR7I	CTCGAG	1 cut(s)	260
PkrI	GCNGC	3 cut(s)	117, 133, 561
PleI	GAGTC	2 cut(s)	133, 441
PpsI	GAGTC	2 cut(s)	133, 441
PpuMI	RGGWCCY	2 cut(s)	471, 529
Psp5II	RGGWCCY	2 cut(s)	471, 529
Psp6I	CCWGG	2 cut(s)	155, 611
PspGI	CCWGG	2 cut(s)	155, 611
PspN4I	GGNNCC	3 cut(s)	472, 591, 608
PspPI	GGNCC	3 cut(s)	230, 471, 529
PspPPI	RGGWCCY	2 cut(s)	471, 529
PspXI	VCTCGAGB	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	487, 568
RsaI	GTAC	4 cut(s)	243, 510, 608, 762
RsaNI	GTAC	4 cut(s)	242, 509, 607, 761
RseI	CAYNNNNRTG	2 cut(s)	11, 583
SaqAI	TTAA	4 cut(s)	150, 387, 581, 635
SatI	GCNGC	3 cut(s)	116, 132, 560
Sau3AI	GATC	6 cut(s)	104, 236, 487, 568, 688, 729
Sau96I	GGNCC	3 cut(s)	230, 471, 529
ScaI	AGTACT	1 cut(s)	510
SchI	GAGTC	2 cut(s)	133, 441
ScrFI	CCNGG	2 cut(s)	157, 613
SduI	GDGCHC	4 cut(s)	8, 166, 592, 787
SfaNI	GCATC	3 cut(s)	160, 655, 712
Sfr274I	CTCGAG	1 cut(s)	260
SinI	GGWCC	3 cut(s)	230, 471, 529
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	2 cut(s)	11, 583
SmlI	CTYRAG	3 cut(s)	260, 512, 634
SmoI	CTYRAG	3 cut(s)	260, 512, 634
SpeI	ACTAGT	1 cut(s)	457
Sse9I	AATT	3 cut(s)	278, 299, 517
SsiI	CCGC	3 cut(s)	47, 61, 428
SspMI	CTAG	5 cut(s)	458, 479, 692, 834, 863
StyD4I	CCNGG	2 cut(s)	155, 611
StyI	CCWWGG	2 cut(s)	174, 525
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	5 cut(s)	247, 261, 324, 575, 747
TasI	AATT	3 cut(s)	278, 299, 517
TatI	WGTACW	3 cut(s)	241, 508, 760
Tru1I	TTAA	4 cut(s)	150, 387, 581, 635
Tru9I	TTAA	4 cut(s)	150, 387, 581, 635
TscAI	CASTG	1 cut(s)	732
TseFI	GTSAC	2 cut(s)	410, 804
TseI	GCWGC	3 cut(s)	115, 131, 559
Tsp45I	GTSAC	2 cut(s)	410, 804
TspDTI	ATGAA	5 cut(s)	278, 291, 336, 354, 831
TspGWI	ACGGA	2 cut(s)	440, 582
TspRI	CASTG	1 cut(s)	732
Vha464I	CTTAAG	1 cut(s)	634
VpaK11BI	GGWCC	3 cut(s)	230, 471, 529
XbaI	TCTAGA	1 cut(s)	862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XhoI	CTCGAG	1 cut(s)	260
XspI	CTAG	5 cut(s)	458, 479, 692, 834, 863
ZrmI	AGTACT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.