Rmu_sc0000825.1_g000015

Zeaxanthin epoxidase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000825.1
Physical Location & Seq
Forward (+)
67270 .. 69480
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000825.1_g000015.1.cds

Sequence Viewer

Length: 1065 bp
atggaaacaatggtggaggatgtggtgataataggggcagggatagccggtttggccactgcagtggcgctgaagagagcaggaattgaagcccttgtgttggagagatccgaagggctgagagccacaggtgcagccttgactctataccccaacgcttggtctgctcttgatgcattgggaatttctcagaagctcgcaactctccgtttctcttccaagatcactgctattgatacccaacaacatgaaggttcatcccttgccattgttttcatggaaaatggaactattatcaaagcaaaggttctgatagggtgtgacggtgtgcactcggtggtgtcacgctggttagggctcggtgaaccagtcctttcgggtcgatcagcggttcgtggattggctgtgtttcctcaagaccatggactcggccaaaactttcgacagtacgtaggaacaggcataagggctggttttattcccgtttctgacaaagacgtatattggttcttcagttgcatatctccagctaaaggtgaaagcttgggagaggatccgaaagaaactaaaaaacaagtacttgagaattatgccaaggacctcccacctttatacctagacgttgtgcagcactcggatctttcaacgttgacaagggctccgctgaagttcagatatccatggcatgttgtatttgggaacttaagcaagcaaaacatcacagtggccggcgatgccatgcacccgatgacacctgatttagcacaagggggtggctcagccttagaagatgccgtgatcttaggcagacacatagggaaatccttcgttaaaaatggacgagttctggtgccaaaagagatggccgtcgcaattgacaaatatatagaagaaagaaggtggcacgttgctttgttgattgcgggatcttatatatcaggatgggtgcaacaagcagggtctggctggggtaagaaattcttgagggatgtcatgttttacaagttcctttaccctaaaattgttagatatatgcactatgactgtggaaaacttgatttctag

Protein Analysis

354

Amino Acids

38.7

Weight (kDa)

8.92

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 850
AccB7I CCANNNNNTGG 1 cut(s) 159
AciI CCGC 3 cut(s) 389, 662, 923
AclI AACGTT 1 cut(s) 647
AclWI GGATC 5 cut(s) 102, 548, 561, 645, 934
AcoI YGGCCR 4 cut(s) 54, 430, 726, 864
AcsI RAATTY 2 cut(s) 183, 977
AcuI CTGAAG 3 cut(s) 92, 496, 686
AdeI CACNNNGTG 1 cut(s) 337
AfaI GTAC 2 cut(s) 449, 579
AfiI CCNNNNNNNGG 3 cut(s) 100, 159, 533
AflII CTTAAG 1 cut(s) 703
AgsI TTSAA 2 cut(s) 89, 645
AleI CACNNNNGTG 1 cut(s) 62
AluBI AGCT 3 cut(s) 196, 530, 543
AluI AGCT 3 cut(s) 196, 530, 543
Alw21I GWGCWC 1 cut(s) 333
Alw44I GTGCAC 1 cut(s) 329
AlwI GGATC 5 cut(s) 102, 548, 561, 645, 934
AlwNI CAGNNNCTG 1 cut(s) 962
AoxI GGCC 4 cut(s) 54, 430, 726, 864
ApaLI GTGCAC 1 cut(s) 329
ApeKI GCWGC 2 cut(s) 134, 628
ApoI RAATTY 2 cut(s) 183, 977
Asp700I GAANNNNTTC 1 cut(s) 824
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 598
AsuHPI GGTGA 3 cut(s) 37, 374, 548
AvaII GGWCC 1 cut(s) 598
BaeGI GKGCMC 1 cut(s) 333
BalI TGGCCA 1 cut(s) 56
BamHI GGATCC 1 cut(s) 553
BanI GGYRCC 1 cut(s) 850
BanII GRGCYC 2 cut(s) 360, 661
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 146, 640
BccI CCATC 2 cut(s) 856, 936
BceAI ACGGC 2 cut(s) 779, 851
BfaI CTAG 2 cut(s) 617, 1063
BfmI CTRYAG 1 cut(s) 60
BfoI RGCGCY 1 cut(s) 71
BfrI CTTAAG 1 cut(s) 703
BglI GCCNNNNNGGC 1 cut(s) 53
BisI GCNGC 2 cut(s) 135, 629
BlpI GCTNAGC 1 cut(s) 778
BlsI GCNGC 2 cut(s) 136, 630
BmcAI AGTACT 1 cut(s) 579
Bme18I GGWCC 1 cut(s) 598
BmgT120I GGNCC 1 cut(s) 598
BmiI GGNNCC 3 cut(s) 555, 660, 852
BmsI GCATC 3 cut(s) 163, 724, 781
BpmI CTGGAG 1 cut(s) 510
Bpu1102I GCTNAGC 1 cut(s) 778
BpuEI CTTGAG 3 cut(s) 399, 602, 1003
BsaAI YACGTR 1 cut(s) 451
BsaJI CCNNGG 3 cut(s) 421, 594, 680
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 159, 533
Bse118I RCCGGY 2 cut(s) 47, 728
Bse1I ACTGG 1 cut(s) 368
BseDI CCNNGG 3 cut(s) 421, 594, 680
BseGI GGATG 4 cut(s) 25, 257, 947, 994
BseLI CCNNNNNNNGG 3 cut(s) 100, 159, 533
BseMII CTCAG 3 cut(s) 110, 203, 792
BseNI ACTGG 1 cut(s) 368
BseSI GKGCMC 1 cut(s) 333
BseXI GCAGC 2 cut(s) 146, 640
BseYI CCCAGC 1 cut(s) 966
BsgI GTGCAG 2 cut(s) 153, 647
BshFI GGCC 4 cut(s) 56, 432, 728, 866
BshNI GGYRCC 1 cut(s) 850
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 2 cut(s) 48, 729
BslI CCNNNNNNNGG 3 cut(s) 100, 159, 533
BsnI GGCC 4 cut(s) 56, 432, 728, 866
Bsp1286I GDGCHC 3 cut(s) 333, 360, 661
Bsp143I GATC 7 cut(s) 107, 222, 383, 553, 637, 798, 926
Bsp1720I GCTNAGC 1 cut(s) 778
Bsp19I CCATGG 2 cut(s) 421, 680
BspACI CCGC 3 cut(s) 389, 662, 923
BspANI GGCC 4 cut(s) 56, 432, 728, 866
BspCNI CTCAG 3 cut(s) 111, 202, 791
BspLI GGNNCC 3 cut(s) 555, 660, 852
BspMAI CTGCAG 1 cut(s) 64
BspPI GGATC 5 cut(s) 102, 548, 561, 645, 934
BspT107I GGYRCC 1 cut(s) 850
BspTI CTTAAG 1 cut(s) 703
BsrFI RCCGGY 2 cut(s) 47, 728
BsrI ACTGG 1 cut(s) 368
BssAI RCCGGY 2 cut(s) 47, 728
BssECI CCNNGG 3 cut(s) 421, 594, 680
BssMI GATC 7 cut(s) 107, 222, 383, 553, 637, 798, 926
BssT1I CCWWGG 3 cut(s) 421, 594, 680
Bst4CI ACNGT 4 cut(s) 326, 447, 724, 1046
Bst6I CTCTTC 2 cut(s) 68, 220
BstAFI CTTAAG 1 cut(s) 703
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 3 cut(s) 198, 710, 730
BstDEI CTNAG 5 cut(s) 119, 189, 778, 784, 802
BstDSI CCRYGG 2 cut(s) 421, 680
BstF5I GGATG 4 cut(s) 25, 257, 947, 994
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 7 cut(s) 110, 225, 386, 556, 640, 801, 929
BstMBI GATC 7 cut(s) 107, 222, 383, 553, 637, 798, 926
BstMWI GCNNNNNNNGC 6 cut(s) 44, 53, 131, 164, 173, 734
BstNSI RCATGY 1 cut(s) 689
BstSFI CTRYAG 1 cut(s) 60
BstSLI GKGCMC 1 cut(s) 333
BstSNI TACGTA 1 cut(s) 451
BstV1I GCAGC 2 cut(s) 146, 640
BstX2I RGATCY 4 cut(s) 107, 553, 637, 926
BstXI CCANNNNNNTGG 1 cut(s) 64
BstYI RGATCY 4 cut(s) 107, 553, 637, 926
BsuRI GGCC 4 cut(s) 56, 432, 728, 866
BtgI CCRYGG 2 cut(s) 421, 680
BtgZI GCGATG 1 cut(s) 747
BtsCI GGATG 4 cut(s) 25, 257, 947, 994
BtsI GCAGTG 3 cut(s) 57, 69, 225
BtsIMutI CAGTG 4 cut(s) 57, 69, 225, 729
Cac8I GCNNGC 3 cut(s) 198, 710, 730
CaiI CAGNNNCTG 1 cut(s) 962
CfoI GCGC 1 cut(s) 70
Cfr10I RCCGGY 2 cut(s) 47, 728
Cfr13I GGNCC 1 cut(s) 598
Csp6I GTAC 2 cut(s) 448, 578
CviAII CATG 7 cut(s) 248, 277, 422, 681, 686, 739, 994
CviQI GTAC 2 cut(s) 448, 578
DdeI CTNAG 5 cut(s) 119, 189, 778, 784, 802
DpnI GATC 7 cut(s) 109, 224, 385, 555, 639, 800, 928
DpnII GATC 7 cut(s) 107, 222, 383, 553, 637, 798, 926
DraIII CACNNNGTG 1 cut(s) 337
EaeI YGGCCR 4 cut(s) 54, 430, 726, 864
Eam1104I CTCTTC 2 cut(s) 68, 220
EarI CTCTTC 2 cut(s) 68, 220
Eco105I TACGTA 1 cut(s) 451
Eco130I CCWWGG 3 cut(s) 421, 594, 680
Eco24I GRGCYC 2 cut(s) 360, 661
Eco32I GATATC 1 cut(s) 677
Eco47I GGWCC 1 cut(s) 598
Eco57I CTGAAG 3 cut(s) 92, 496, 686
EcoO109I RGGNCCY 1 cut(s) 598
EcoRV GATATC 1 cut(s) 677
EcoT14I CCWWGG 3 cut(s) 421, 594, 680
EcoT22I ATGCAT 1 cut(s) 178
EcoT38I GRGCYC 2 cut(s) 360, 661
ErhI CCWWGG 3 cut(s) 421, 594, 680
FaeI CATG 7 cut(s) 251, 280, 425, 684, 689, 742, 997
FalI AAGNNNNNCTT 2 cut(s) 965, 997
FatI CATG 7 cut(s) 247, 276, 421, 680, 685, 738, 993
FauI CCCGC 1 cut(s) 916
Fnu4HI GCNGC 2 cut(s) 135, 629
FokI GGATG 4 cut(s) 32, 244, 954, 1001
FriOI GRGCYC 2 cut(s) 360, 661
Fsp4HI GCNGC 2 cut(s) 135, 629
FspBI CTAG 2 cut(s) 617, 1063
GlaI GCGC 1 cut(s) 69
GluI GCNGC 2 cut(s) 135, 629
GsaI CCCAGC 1 cut(s) 970
GsuI CTGGAG 1 cut(s) 510
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 4 cut(s) 56, 432, 728, 866
HapII CCGG 2 cut(s) 48, 729
HhaI GCGC 1 cut(s) 70
Hin1II CATG 7 cut(s) 251, 280, 425, 684, 689, 742, 997
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 1 cut(s) 541
HinfI GANTC 2 cut(s) 142, 426
HpaII CCGG 2 cut(s) 48, 729
HphI GGTGA 3 cut(s) 37, 374, 548
Hpy166II GTNNAC 3 cut(s) 331, 365, 651
Hpy188I TCNGA 7 cut(s) 112, 192, 312, 490, 558, 637, 674
Hpy188III TCNNGA 4 cut(s) 170, 416, 939, 982
Hpy8I GTNNAC 3 cut(s) 331, 365, 651
Hpy99I CGWCG 1 cut(s) 872
HpyAV CCTTC 4 cut(s) 107, 245, 835, 891
HpyCH4III ACNGT 4 cut(s) 326, 447, 724, 1046
HpyCH4IV ACGT 5 cut(s) 450, 498, 621, 647, 906
HpyCH4V TGCA 9 cut(s) 62, 134, 176, 331, 519, 628, 742, 949, 1036
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 53, 131, 164, 173, 734
HpyF3I CTNAG 5 cut(s) 119, 189, 778, 784, 802
HpySE526I ACGT 5 cut(s) 450, 498, 621, 647, 906
Hsp92II CATG 7 cut(s) 251, 280, 425, 684, 689, 742, 997
HspAI GCGC 1 cut(s) 68
KroI GCCGGC 1 cut(s) 728
KroNI GCCGGC 1 cut(s) 730
Kzo9I GATC 7 cut(s) 107, 222, 383, 553, 637, 798, 926
LmnI GCTCC 1 cut(s) 664
Lsp1109I GCAGC 2 cut(s) 146, 640
LweI GCATC 3 cut(s) 163, 724, 781
MaeI CTAG 2 cut(s) 617, 1063
MaeII ACGT 5 cut(s) 450, 498, 621, 647, 906
MaeIII GTNAC 2 cut(s) 320, 342
MalI GATC 7 cut(s) 109, 224, 385, 555, 639, 800, 928
MboI GATC 7 cut(s) 107, 222, 383, 553, 637, 798, 926
MboII GAAGA 5 cut(s) 85, 207, 502, 800, 902
MfeI CAATTG 1 cut(s) 873
MflI RGATCY 4 cut(s) 107, 553, 637, 926
MhlI GDGCHC 3 cut(s) 333, 360, 661
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 6 cut(s) 84, 183, 586, 873, 977, 1020
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 2 cut(s) 136, 420
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 5 cut(s) 10, 423, 544, 611, 978
Mox20I TGGCCA 1 cut(s) 56
Mph1103I ATGCAT 1 cut(s) 178
MroNI GCCGGC 1 cut(s) 728
MroXI GAANNNNTTC 1 cut(s) 824
MscI TGGCCA 1 cut(s) 56
MseI TTAA 2 cut(s) 704, 831
MslI CAYNNNNRTG 2 cut(s) 62, 722
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 2 cut(s) 389, 664
MspCI CTTAAG 1 cut(s) 703
MspI CCGG 2 cut(s) 48, 729
MunI CAATTG 1 cut(s) 873
MwoI GCNNNNNNNGC 6 cut(s) 44, 53, 131, 164, 173, 734
NaeI GCCGGC 1 cut(s) 730
NcoI CCATGG 2 cut(s) 421, 680
NdeII GATC 7 cut(s) 107, 222, 383, 553, 637, 798, 926
NgoMIV GCCGGC 1 cut(s) 728
NlaIII CATG 7 cut(s) 251, 280, 425, 684, 689, 742, 997
NlaIV GGNNCC 3 cut(s) 555, 660, 852
NmeAIII GCCGAG 1 cut(s) 408
NmuCI GTSAC 2 cut(s) 320, 342
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 1 cut(s) 689
OliI CACNNNNGTG 1 cut(s) 62
PdiI GCCGGC 1 cut(s) 730
PdmI GAANNNNTTC 1 cut(s) 824
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 2 cut(s) 136, 630
PleI GAGTC 2 cut(s) 136, 420
PpsI GAGTC 2 cut(s) 136, 420
Ppu21I YACGTR 1 cut(s) 451
PpuMI RGGWCCY 1 cut(s) 598
Psp1406I AACGTT 1 cut(s) 647
Psp5II RGGWCCY 1 cut(s) 598
PspFI CCCAGC 1 cut(s) 966
PspN4I GGNNCC 3 cut(s) 555, 660, 852
PspPI GGNCC 1 cut(s) 598
PspPPI RGGWCCY 1 cut(s) 598
PstI CTGCAG 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 962
PsuI RGATCY 4 cut(s) 107, 553, 637, 926
RsaI GTAC 2 cut(s) 449, 579
RsaNI GTAC 2 cut(s) 448, 578
RseI CAYNNNNRTG 2 cut(s) 62, 722
SaqAI TTAA 2 cut(s) 704, 831
SatI GCNGC 2 cut(s) 135, 629
Sau3AI GATC 7 cut(s) 107, 222, 383, 553, 637, 798, 926
Sau96I GGNCC 1 cut(s) 598
ScaI AGTACT 1 cut(s) 579
SchI GAGTC 2 cut(s) 136, 420
SduI GDGCHC 3 cut(s) 333, 360, 661
SfaNI GCATC 3 cut(s) 163, 724, 781
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 1 cut(s) 598
SmiMI CAYNNNNRTG 2 cut(s) 62, 722
SmlI CTYRAG 4 cut(s) 414, 581, 703, 982
SmoI CTYRAG 4 cut(s) 414, 581, 703, 982
SnaBI TACGTA 1 cut(s) 451
Sse9I AATT 6 cut(s) 84, 183, 586, 873, 977, 1020
SsiI CCGC 3 cut(s) 389, 662, 923
SspMI CTAG 2 cut(s) 617, 1063
StyI CCWWGG 3 cut(s) 421, 594, 680
TaaI ACNGT 4 cut(s) 326, 447, 724, 1046
TaiI ACGT 5 cut(s) 453, 501, 624, 650, 909
TaqI TCGA 2 cut(s) 382, 442
TasI AATT 6 cut(s) 84, 183, 586, 873, 977, 1020
TatI WGTACW 1 cut(s) 577
Tru1I TTAA 2 cut(s) 704, 831
Tru9I TTAA 2 cut(s) 704, 831
TscAI CASTG 4 cut(s) 64, 69, 232, 729
TseFI GTSAC 2 cut(s) 320, 342
TseI GCWGC 2 cut(s) 134, 628
Tsp45I GTSAC 2 cut(s) 320, 342
TspDTI ATGAA 3 cut(s) 246, 264, 265
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 4 cut(s) 64, 69, 232, 729
Van91I CCANNNNNTGG 1 cut(s) 159
Vha464I CTTAAG 1 cut(s) 703
VneI GTGCAC 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 598
XapI RAATTY 2 cut(s) 183, 977
XceI RCATGY 1 cut(s) 689
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 824
XspI CTAG 2 cut(s) 617, 1063
ZrmI AGTACT 1 cut(s) 579
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.