Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001290

Physical Location & Seq

Genomic Coordinates Reverse (-)

58256358 .. 58258817

Gene Structure 2460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAAACAACGGTGGAGGATGTGGTGATAGTGGGGGCAAGGAATGCTGGTTTGGCCACTGCAGTGGCGCTGAAGAGAGCAGGAATTGAAGCGCTTGTGTTGGAGAGATCCGAAGGGCTGAGAGCCACAGGTGCAGCCTCGACAAGGGGACATATAATTGATGTTGACACAGGAGCAGTTCAAGAAGTATCTAGAGCCATAACCAATGAGGTTCCAGTTGGACCGAGATGTTTACACCGGAAAGCCTTACTCGAGGCCTTGGCAGATAAATTACCAATTCATTCAGTCCGTTTCTCTTCCAAGATCACTGCTATTGATACCCAACAACATGAAGGTTCATCCCTTGCCATTGTTCACATGGAAAATGGAACTATTATCAAAGCAAAGGTTCTGATAGGGTGTGATGGTGTGCACTCGGTGGTGTCACGCTGGTTAGGACTCAGTGAACCAGTCCTTTCGGGTCGATTAGCGGTTCGTGGATTGGCTGTGTTTCCTCAAGGGCATGGACTCGGCCAAAACTTCCGACAGTACGTAGGAACAGGCATAAGGGCTGGTTTTATTCCCATTTCTAACAAAGACGTATATTGGTTCTTCAGTTGCATATCTCCAGCTAAAGAAGAATGGAATGCTTCAAACTTCATGGAAAACTCTCATCAATCAGGATGCGAAAATCTTTTCAATCCTAATTTCATGCATGATTTGTGTCTTGAGGTGATTGACAACCGAGGTGAGAGTTGTGCCATCTCAAGATTGACAAAGGAGAACAAGTTCGCTGATCTGAAAGTAGCAAAGACGAGAAGACAACGCTGCCCACTAGATTGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

275

Amino Acids

30.02

Weight (kDa)

8.18

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001290)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23740 FvH4_1g23750 FvH4_1g23770
malus_domestica	MD11G1231700.v1.1 MD11G1231900.v1.1
prunus_persica	Prupe.6G162100_v2.0.a1
pyrus_communis	pycom11g20520
rosa_chinensis	RchiOBHm_Chr2g0119591 RchiOBHm_Chr2g0119621 RchiOBHm_Chr2g0119641 RchiOBHm_Chr5g0013091
rosa_laevigata	RLG00000018140 RLG00000018142 RLG00000018474 RLG00000018477 RLG00000018479 RLG00000018481 RLG00000018482 RLG00000031985
rosa_multiflora	Rmu_sc0000825.1_g000006 Rmu_sc0000825.1_g000015 Rmu_sc0003158.1_g000005 Rmu_sc0003892.1_g000012 Rmu_sc0027906.1_g000001 Rmu_sc0040685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063490 Rroxscaffold_2G00124140 Rroxscaffold_2G00124230 Rroxscaffold_2G00124240 Rroxscaffold_2G00124250
rosa_rugosa	Rorug02G0222300 Rorug02G0222400 Rorug02G0222400 Rorug02G0222400 Rorug02G0222500.1 Rorug02G0223100 Rorug05G0007200
rosa_samantha	Rh2AG279800 Rh2AG280300 Rh2BG291500 Rh2BG291900 Rh2DG286500 Rh2DG286900 Rh2DG287300 Rh2DG305700 Rh2DG305900 Rh2DG306000 Rh5AG101300 Rh5BG097800 Rh5CG109900 Rh5DG096900
rosa_wichuraiana	Rw2G022360 Rw2G022400 Rw2G022410 Rw5G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	2 cut(s)	54, 511
AcuI	CTGAAG	2 cut(s)	92, 577
AdeI	CACNNNGTG	1 cut(s)	418
AfaI	GTAC	1 cut(s)	530
AfeI	AGCGCT	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	4 cut(s)	89, 182, 633, 679
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AleI	CACNNNNGTG	1 cut(s)	62
AloI	GAACNNNNNNTCC	2 cut(s)	752, 784
AluBI	AGCT	1 cut(s)	611
AluI	AGCT	1 cut(s)	611
Alw21I	GWGCWC	1 cut(s)	414
Alw44I	GTGCAC	1 cut(s)	410
AlwI	GGATC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	251
Aor51HI	AGCGCT	1 cut(s)	93
AoxI	GGCC	3 cut(s)	54, 255, 511
ApaLI	GTGCAC	1 cut(s)	410
ApeKI	GCWGC	2 cut(s)	134, 807
Asp700I	GAANNNNTTC	1 cut(s)	767
AspLEI	GCGC	2 cut(s)	70, 94
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	37, 724, 740
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	414
BalI	TGGCCA	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	805
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	146, 794
BccI	CCATC	2 cut(s)	398, 749
BfaI	CTAG	3 cut(s)	192, 815, 826
BfmI	CTRYAG	1 cut(s)	60
BfoI	RGCGCY	2 cut(s)	71, 95
BisI	GCNGC	2 cut(s)	135, 808
BlsI	GCNGC	2 cut(s)	136, 809
Bme18I	GGWCC	1 cut(s)	221
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	213
BmsI	GCATC	1 cut(s)	653
BpiI	GAAGAC	1 cut(s)	805
BpmI	CTGGAG	1 cut(s)	591
BpuEI	CTTGAG	3 cut(s)	480, 728, 730
BsaAI	YACGTR	1 cut(s)	532
BsaJI	CCNNGG	2 cut(s)	258, 724
BsaWI	WCCGGW	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	752, 782
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	215, 449
BseDI	CCNNGG	2 cut(s)	258, 724
BseGI	GGATG	3 cut(s)	25, 338, 668
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	110, 454
BseNI	ACTGG	2 cut(s)	215, 449
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	2 cut(s)	146, 794
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	3 cut(s)	56, 257, 513
BsiHKAI	GWGCWC	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	162
BsmI	GAATGC	2 cut(s)	49, 631
BsnI	GGCC	3 cut(s)	56, 257, 513
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	3 cut(s)	107, 303, 775
BspACI	CCGC	1 cut(s)	470
BspANI	GGCC	3 cut(s)	56, 257, 513
BspCNI	CTCAG	2 cut(s)	111, 453
BspLI	GGNNCC	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	215, 449
BssECI	CCNNGG	2 cut(s)	258, 724
BssMI	GATC	3 cut(s)	107, 303, 775
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	13, 528
Bst6I	CTCTTC	2 cut(s)	68, 301
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	532
BstDEI	CTNAG	2 cut(s)	119, 440
BstENI	CCTNNNNNAGG	1 cut(s)	142
BstF5I	GGATG	3 cut(s)	25, 338, 668
BstH2I	RGCGCY	2 cut(s)	71, 95
BstHHI	GCGC	2 cut(s)	70, 94
BstKTI	GATC	3 cut(s)	110, 306, 778
BstMBI	GATC	3 cut(s)	107, 303, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 53, 131
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	414
BstSNI	TACGTA	1 cut(s)	532
BstV1I	GCAGC	2 cut(s)	146, 794
BstV2I	GAAGAC	1 cut(s)	805
BstX2I	RGATCY	1 cut(s)	107
BstXI	CCANNNNNNTGG	2 cut(s)	64, 819
BstYI	RGATCY	1 cut(s)	107
BsuRI	GGCC	3 cut(s)	56, 257, 513
BtsCI	GGATG	3 cut(s)	25, 338, 668
BtsI	GCAGTG	3 cut(s)	57, 69, 306
BtsIMutI	CAGTG	4 cut(s)	57, 69, 306, 448
CfoI	GCGC	2 cut(s)	70, 94
Cfr13I	GGNCC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	6 cut(s)	329, 358, 503, 640, 691, 695
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	2 cut(s)	119, 440
DpnI	GATC	3 cut(s)	109, 305, 777
DpnII	GATC	3 cut(s)	107, 303, 775
DraIII	CACNNNGTG	1 cut(s)	418
EaeI	YGGCCR	2 cut(s)	54, 511
Eam1104I	CTCTTC	2 cut(s)	68, 301
EarI	CTCTTC	2 cut(s)	68, 301
Eco105I	TACGTA	1 cut(s)	532
Eco130I	CCWWGG	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	221
Eco47III	AGCGCT	1 cut(s)	93
Eco57I	CTGAAG	2 cut(s)	92, 577
Eco88I	CYCGRG	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	6 cut(s)	332, 361, 506, 643, 694, 698
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	6 cut(s)	328, 357, 502, 639, 690, 694
Fnu4HI	GCNGC	2 cut(s)	135, 808
FokI	GGATG	3 cut(s)	32, 325, 675
Fsp4HI	GCNGC	2 cut(s)	135, 808
FspBI	CTAG	3 cut(s)	192, 815, 826
GlaI	GCGC	2 cut(s)	69, 93
GluI	GCNGC	2 cut(s)	135, 808
GsuI	CTGGAG	1 cut(s)	591
HaeII	RGCGCY	2 cut(s)	71, 95
HaeIII	GGCC	3 cut(s)	56, 257, 513
HapII	CCGG	1 cut(s)	238
HhaI	GCGC	2 cut(s)	70, 94
Hin1II	CATG	6 cut(s)	332, 361, 506, 643, 694, 698
Hin6I	GCGC	2 cut(s)	68, 92
HinP1I	GCGC	2 cut(s)	68, 92
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	2 cut(s)	438, 507
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	3 cut(s)	37, 724, 740
Hpy166II	GTNNAC	5 cut(s)	166, 233, 355, 412, 446
Hpy188I	TCNGA	4 cut(s)	112, 393, 524, 780
Hpy188III	TCNNGA	5 cut(s)	182, 192, 660, 707, 747
Hpy8I	GTNNAC	5 cut(s)	166, 233, 355, 412, 446
HpyAV	CCTTC	2 cut(s)	107, 326
HpyCH4III	ACNGT	2 cut(s)	13, 528
HpyCH4IV	ACGT	2 cut(s)	531, 579
HpyCH4V	TGCA	5 cut(s)	62, 134, 412, 600, 694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 53, 131
HpyF3I	CTNAG	2 cut(s)	119, 440
HpySE526I	ACGT	2 cut(s)	531, 579
Hsp92II	CATG	6 cut(s)	332, 361, 506, 643, 694, 698
HspAI	GCGC	2 cut(s)	68, 92
Kzo9I	GATC	3 cut(s)	107, 303, 775
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	2 cut(s)	146, 794
LweI	GCATC	1 cut(s)	653
MaeI	CTAG	3 cut(s)	192, 815, 826
MaeII	ACGT	2 cut(s)	531, 579
MaeIII	GTNAC	1 cut(s)	423
MalI	GATC	3 cut(s)	109, 305, 777
MboI	GATC	3 cut(s)	107, 303, 775
MboII	GAAGA	5 cut(s)	85, 288, 583, 629, 810
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	414
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	5 cut(s)	84, 156, 269, 276, 685
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	2 cut(s)	432, 501
MmeI	TCCRAC	3 cut(s)	81, 199, 547
MnlI	CCTC	7 cut(s)	10, 148, 202, 247, 504, 703, 719
Mox20I	TGGCCA	1 cut(s)	56
Mph1103I	ATGCAT	1 cut(s)	696
MroXI	GAANNNNTTC	1 cut(s)	767
MscI	TGGCCA	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	62
Msp20I	TGGCCA	1 cut(s)	56
MspI	CCGG	1 cut(s)	238
Mva1269I	GAATGC	2 cut(s)	49, 631
MwoI	GCNNNNNNNGC	3 cut(s)	44, 53, 131
NdeII	GATC	3 cut(s)	107, 303, 775
NlaIII	CATG	6 cut(s)	332, 361, 506, 643, 694, 698
NlaIV	GGNNCC	1 cut(s)	213
NmeAIII	GCCGAG	1 cut(s)	489
NmuCI	GTSAC	1 cut(s)	423
NsiI	ATGCAT	1 cut(s)	696
OliI	CACNNNNGTG	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	257
PctI	GAATGC	2 cut(s)	49, 631
PdmI	GAANNNNTTC	1 cut(s)	767
PkrI	GCNGC	2 cut(s)	136, 809
PleI	GAGTC	2 cut(s)	432, 501
PpsI	GAGTC	2 cut(s)	432, 501
Ppu21I	YACGTR	1 cut(s)	532
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	221
PspXI	VCTCGAGB	1 cut(s)	251
PstI	CTGCAG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	107
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	62
SatI	GCNGC	2 cut(s)	135, 808
Sau3AI	GATC	3 cut(s)	107, 303, 775
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	2 cut(s)	432, 501
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	9 cut(s)	133, 213, 337, 390, 534, 582, 613, 714, 730
SfaNI	GCATC	1 cut(s)	653
SfcI	CTRYAG	1 cut(s)	60
Sfr274I	CTCGAG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	221
SlaI	CTCGAG	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	4 cut(s)	251, 495, 707, 745
SmoI	CTYRAG	4 cut(s)	251, 495, 707, 745
SnaBI	TACGTA	1 cut(s)	532
Sse9I	AATT	5 cut(s)	84, 156, 269, 276, 685
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	1 cut(s)	470
SspMI	CTAG	3 cut(s)	192, 815, 826
StuI	AGGCCT	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	13, 528
TaiI	ACGT	2 cut(s)	534, 582
TaqI	TCGA	3 cut(s)	140, 252, 463
TaqII	GACCGA	1 cut(s)	238
TasI	AATT	5 cut(s)	84, 156, 269, 276, 685
TscAI	CASTG	4 cut(s)	64, 69, 313, 448
TseFI	GTSAC	1 cut(s)	423
TseI	GCWGC	2 cut(s)	134, 807
Tsp45I	GTSAC	1 cut(s)	423
TspDTI	ATGAA	5 cut(s)	269, 327, 345, 628, 679
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	4 cut(s)	64, 69, 313, 448
VneI	GTGCAC	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	221
XagI	CCTNNNNNAGG	1 cut(s)	142
XbaI	TCTAGA	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XhoI	CTCGAG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	767
XspI	CTAG	3 cut(s)	192, 815, 826
Zsp2I	ATGCAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.