Rh2DG286500

Zeaxanthin epoxidase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
33204891 .. 33208507
3617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG286500.1

Sequence Viewer

Length: 969 bp
ATGTCATCCTCGATCATCACGAAAATATTCAGTGATGCAGTTGGACCGAGATCAGTACACCGGAAAGCCTTGCTCGAGGCTTTGGCAGATGAATTACCGGTTCTTTCAATCCGTTTCTCTTCCAAGATCTCTGCTATCGAAACCCAACAACATGAAGGCTCATCCATTGCCATTGTTCACATGGAAAATGGAACTGTCATTAAAGCAAAGGTTCTCATAGGTTGTGACGGGGTTCACTCAGTTGTGTCACGCTGGTTAGGACTCTCTGAACCAGTCCTTTCAGGTCGATCAGCTGTTCGTGGCTTAGCTGTGTATCCTCAAGGCCATGGACTCGAGAGGAACGTGCAACAGTATGTAGGATCAGGTAGAAGGGCTGGCTTCGTTCCCCTCACCGACAAAGAGATCTACTGGTTCTTCAGTTGCACATCTCCGGCTAAAGGGACCTTCCTGGCAGAATATCCGGAAGATATACAAAAAGAAGTACTTGAGAATCATACCAAGGACCTCCCACCTATATTCTCAGATGTTGTGCAGCATTCAGATCTTTCGACATTAACATGGGCTCCGCTGAAGTTTAGGTATCCCTGGAACGTAGTGTTTGGCAACTTAAGCAAGCAAAACATCACGGTGGCCTGCGATGCCATGCACCCCATGACACCTGACCTAGCACAGGGGGGTTGCTCATCATTAGAAGATGCAGTGATCTTAGGCAGGCATATTGGGACATCCTTTGTAAAAAATGGACAAGTACTTGTGCAGAAAGAGATGAGTGAAGTATTGGGCAAATATGTGGAAGAAAGAAGGTGGCGCGTCGCCTTGTTGATCACTGGATCATATATATCAGGATGGATGCAGCAGGCAGGCTCTGGATGGGGTATGAAATTCTTGAGAGACGCCATATTTTACAAGTTCCTTTTCCCTAAGATGGTTAGATATTTATACTATGACAGTGGAAAACTCGACTTCTAG

Protein Analysis

322

Amino Acids

35.85

Weight (kDa)

8.55

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 24 - 272 2.3e-11 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 810
AccIII TCCGGA 1 cut(s) 460
AciI CCGC 1 cut(s) 566
AclWI GGATC 2 cut(s) 367, 838
AcsI RAATTY 1 cut(s) 881
AcuI CTGAAG 2 cut(s) 400, 590
AcyI GRCGYC 1 cut(s) 894
AfaI GTAC 3 cut(s) 57, 483, 750
AfiI CCNNNNNNNGG 3 cut(s) 437, 670, 925
AflII CTTAAG 1 cut(s) 607
AgeI ACCGGT 1 cut(s) 97
AgsI TTSAA 1 cut(s) 108
AjnI CCWGG 2 cut(s) 447, 584
AluBI AGCT 2 cut(s) 293, 308
AluI AGCT 2 cut(s) 293, 308
Alw26I GTCTC 1 cut(s) 885
AlwI GGATC 2 cut(s) 367, 838
AlwNI CAGNNNCTG 1 cut(s) 866
Ama87I CYCGRG 2 cut(s) 74, 332
Aor13HI TCCGGA 1 cut(s) 460
AoxI GGCC 2 cut(s) 322, 630
ApeKI GCWGC 2 cut(s) 532, 853
ApoI RAATTY 1 cut(s) 881
AsiGI ACCGGT 1 cut(s) 97
Asp700I GAANNNNTTC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 810
AspS9I GGNCC 3 cut(s) 44, 441, 502
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 2 cut(s) 74, 332
AvaII GGWCC 3 cut(s) 44, 441, 502
BanII GRGCYC 1 cut(s) 565
BbvI GCAGC 2 cut(s) 544, 865
BccI CCATC 3 cut(s) 840, 864, 919
BciT130I CCWGG 2 cut(s) 449, 586
BciVI GTATCC 2 cut(s) 324, 591
BclI TGATCA 1 cut(s) 822
BcoDI GTCTC 1 cut(s) 885
BfaI CTAG 2 cut(s) 665, 967
BfrI CTTAAG 1 cut(s) 607
BfuI GTATCC 2 cut(s) 324, 591
BglII AGATCT 3 cut(s) 126, 402, 541
BisI GCNGC 2 cut(s) 533, 854
BlpI GCTNAGC 1 cut(s) 304
BlsI GCNGC 2 cut(s) 534, 855
BmcAI AGTACT 2 cut(s) 483, 750
Bme1390I CCNGG 2 cut(s) 449, 586
Bme18I GGWCC 3 cut(s) 44, 441, 502
BmeT110I CYCGRG 2 cut(s) 74, 332
BmgT120I GGNCC 3 cut(s) 44, 441, 502
BmiI GGNNCC 2 cut(s) 442, 564
BmrFI CCNGG 2 cut(s) 449, 586
BmsI GCATC 4 cut(s) 25, 628, 685, 840
Bpu1102I GCTNAGC 1 cut(s) 304
BpuEI CTTGAG 3 cut(s) 303, 506, 907
BsaHI GRCGYC 1 cut(s) 894
BsaJI CCNNGG 3 cut(s) 325, 498, 584
BsaWI WCCGGW 3 cut(s) 60, 97, 460
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 670, 925
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 3 cut(s) 272, 413, 832
Bse3DI GCAATG 1 cut(s) 165
BseAI TCCGGA 1 cut(s) 460
BseBI CCWGG 2 cut(s) 449, 586
BseDI CCNNGG 3 cut(s) 325, 498, 584
BseGI GGATG 6 cut(s) 5, 161, 725, 851, 855, 875
BseLI CCNNNNNNNGG 3 cut(s) 437, 670, 925
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 2 cut(s) 252, 534
BseNI ACTGG 3 cut(s) 272, 413, 832
BseXI GCAGC 2 cut(s) 544, 865
BsgI GTGCAG 2 cut(s) 551, 776
Bsh1236I CGCG 1 cut(s) 810
BshFI GGCC 2 cut(s) 324, 632
BshTI ACCGGT 1 cut(s) 97
BsiHKCI CYCGRG 2 cut(s) 74, 332
BsiSI CCGG 4 cut(s) 61, 98, 431, 461
BslFI GGGAC 2 cut(s) 454, 736
BslI CCNNNNNNNGG 3 cut(s) 437, 670, 925
BsmAI GTCTC 1 cut(s) 885
BsmBI CGTCTC 1 cut(s) 885
BsmFI GGGAC 2 cut(s) 454, 736
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 2 cut(s) 324, 632
BsoBI CYCGRG 2 cut(s) 74, 332
Bsp1286I GDGCHC 1 cut(s) 565
Bsp13I TCCGGA 1 cut(s) 460
Bsp1720I GCTNAGC 1 cut(s) 304
Bsp19I CCATGG 1 cut(s) 325
BspACI CCGC 1 cut(s) 566
BspANI GGCC 2 cut(s) 324, 632
BspCNI CTCAG 2 cut(s) 251, 533
BspEI TCCGGA 1 cut(s) 460
BspFNI CGCG 1 cut(s) 810
BspLI GGNNCC 2 cut(s) 442, 564
BspPI GGATC 2 cut(s) 367, 838
BspTI CTTAAG 1 cut(s) 607
BsrDI GCAATG 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 3 cut(s) 272, 413, 832
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 3 cut(s) 325, 498, 584
BssNI GRCGYC 1 cut(s) 894
BssT1I CCWWGG 2 cut(s) 325, 498
Bst2UI CCWGG 2 cut(s) 449, 586
Bst4CI ACNGT 4 cut(s) 196, 351, 628, 950
Bst6I CTCTTC 1 cut(s) 124
BstACI GRCGYC 1 cut(s) 894
BstAFI CTTAAG 1 cut(s) 607
BstC8I GCNNGC 6 cut(s) 376, 614, 634, 713, 858, 862
BstDEI CTNAG 5 cut(s) 238, 304, 520, 706, 921
BstDSI CCRYGG 1 cut(s) 325
BstENI CCTNNNNNAGG 1 cut(s) 668
BstF5I GGATG 6 cut(s) 5, 161, 725, 851, 855, 875
BstFNI CGCG 1 cut(s) 810
BstHHI GCGC 1 cut(s) 810
BstMAI GTCTC 1 cut(s) 885
BstMWI GCNNNNNNNGC 2 cut(s) 609, 638
BstNI CCWGG 2 cut(s) 449, 586
BstSCI CCNGG 2 cut(s) 447, 584
BstUI CGCG 1 cut(s) 810
BstV1I GCAGC 2 cut(s) 544, 865
BstX2I RGATCY 3 cut(s) 126, 402, 541
BstYI RGATCY 3 cut(s) 126, 402, 541
BsuI GTATCC 2 cut(s) 324, 591
BsuRI GGCC 2 cut(s) 324, 632
BtgI CCRYGG 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 651
BtsCI GGATG 6 cut(s) 5, 161, 725, 851, 855, 875
BtsI GCAGTG 1 cut(s) 705
BtsIMutI CAGTG 4 cut(s) 37, 705, 825, 955
Cac8I GCNNGC 6 cut(s) 376, 614, 634, 713, 858, 862
CaiI CAGNNNCTG 1 cut(s) 866
CfoI GCGC 1 cut(s) 810
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 3 cut(s) 44, 441, 502
CseI GACGC 2 cut(s) 799, 902
Csp6I GTAC 3 cut(s) 56, 482, 749
CspAI ACCGGT 1 cut(s) 97
CviAII CATG 6 cut(s) 152, 181, 326, 558, 643, 652
CviQI GTAC 3 cut(s) 56, 482, 749
DdeI CTNAG 5 cut(s) 238, 304, 520, 706, 921
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 325, 498
Eco24I GRGCYC 1 cut(s) 565
Eco47I GGWCC 3 cut(s) 44, 441, 502
Eco57I CTGAAG 2 cut(s) 400, 590
Eco88I CYCGRG 2 cut(s) 74, 332
EcoNI CCTNNNNNAGG 1 cut(s) 668
EcoO109I RGGNCCY 2 cut(s) 441, 502
EcoRII CCWGG 2 cut(s) 447, 584
EcoT14I CCWWGG 2 cut(s) 325, 498
EcoT38I GRGCYC 1 cut(s) 565
ErhI CCWWGG 2 cut(s) 325, 498
Esp3I CGTCTC 1 cut(s) 885
FaeI CATG 6 cut(s) 155, 184, 329, 561, 646, 655
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 2 cut(s) 454, 736
FatI CATG 6 cut(s) 151, 180, 325, 557, 642, 651
FbaI TGATCA 1 cut(s) 822
Fnu4HI GCNGC 2 cut(s) 533, 854
FokI GGATG 5 cut(s) 148, 712, 858, 862, 882
FriOI GRGCYC 1 cut(s) 565
Fsp4HI GCNGC 2 cut(s) 533, 854
FspBI CTAG 2 cut(s) 665, 967
GlaI GCGC 1 cut(s) 809
GluI GCNGC 2 cut(s) 533, 854
HaeIII GGCC 2 cut(s) 324, 632
HapII CCGG 4 cut(s) 61, 98, 431, 461
HgaI GACGC 2 cut(s) 799, 902
HhaI GCGC 1 cut(s) 810
Hin1I GRCGYC 1 cut(s) 894
Hin1II CATG 6 cut(s) 155, 184, 329, 561, 646, 655
Hin6I GCGC 1 cut(s) 808
HinP1I GCGC 1 cut(s) 808
HinfI GANTC 3 cut(s) 261, 330, 490
HpaII CCGG 4 cut(s) 61, 98, 431, 461
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 3 cut(s) 58, 178, 235
Hpy188I TCNGA 3 cut(s) 268, 523, 541
Hpy188III TCNNGA 6 cut(s) 19, 334, 461, 843, 867, 886
Hpy8I GTNNAC 3 cut(s) 58, 178, 235
Hpy99I CGWCG 1 cut(s) 815
HpyAV CCTTC 4 cut(s) 149, 363, 454, 795
HpyCH4III ACNGT 4 cut(s) 196, 351, 628, 950
HpyCH4IV ACGT 2 cut(s) 342, 591
HpyCH4V TGCA 8 cut(s) 38, 346, 423, 532, 646, 698, 757, 853
HpyF10VI GCNNNNNNNGC 2 cut(s) 609, 638
HpyF3I CTNAG 5 cut(s) 238, 304, 520, 706, 921
HpySE526I ACGT 2 cut(s) 342, 591
Hsp92I GRCGYC 1 cut(s) 894
Hsp92II CATG 6 cut(s) 155, 184, 329, 561, 646, 655
HspAI GCGC 1 cut(s) 808
Kpn2I TCCGGA 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 822
LmnI GCTCC 1 cut(s) 568
Lsp1109I GCAGC 2 cut(s) 544, 865
LweI GCATC 4 cut(s) 25, 628, 685, 840
MaeI CTAG 2 cut(s) 665, 967
MaeII ACGT 2 cut(s) 342, 591
MaeIII GTNAC 2 cut(s) 224, 246
MboII GAAGA 5 cut(s) 111, 406, 476, 704, 806
MflI RGATCY 3 cut(s) 126, 402, 541
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 2 cut(s) 92, 881
MlyI GAGTC 2 cut(s) 255, 324
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 6 cut(s) 19, 70, 327, 330, 398, 515
MroI TCCGGA 1 cut(s) 460
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 3 cut(s) 201, 554, 608
MslI CAYNNNNRTG 2 cut(s) 556, 626
MspA1I CMGCKG 2 cut(s) 293, 568
MspCI CTTAAG 1 cut(s) 607
MspI CCGG 4 cut(s) 61, 98, 431, 461
MspR9I CCNGG 2 cut(s) 449, 586
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 2 cut(s) 449, 586
MvnI CGCG 1 cut(s) 810
MwoI GCNNNNNNNGC 2 cut(s) 609, 638
NcoI CCATGG 1 cut(s) 325
NlaIII CATG 6 cut(s) 155, 184, 329, 561, 646, 655
NlaIV GGNNCC 2 cut(s) 442, 564
NmuCI GTSAC 2 cut(s) 224, 246
PaeR7I CTCGAG 2 cut(s) 74, 332
PcsI WCGNNNNNNNCGW 2 cut(s) 17, 339
PctI GAATGC 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 490
PinAI ACCGGT 1 cut(s) 97
PkrI GCNGC 2 cut(s) 534, 855
PleI GAGTC 2 cut(s) 255, 324
PpsI GAGTC 2 cut(s) 255, 324
PpuMI RGGWCCY 2 cut(s) 441, 502
Psp5II RGGWCCY 2 cut(s) 441, 502
Psp6I CCWGG 2 cut(s) 447, 584
PspGI CCWGG 2 cut(s) 447, 584
PspN4I GGNNCC 2 cut(s) 442, 564
PspPI GGNCC 3 cut(s) 44, 441, 502
PspPPI RGGWCCY 2 cut(s) 441, 502
PspXI VCTCGAGB 1 cut(s) 74
PstNI CAGNNNCTG 1 cut(s) 866
PsuI RGATCY 3 cut(s) 126, 402, 541
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 3 cut(s) 57, 483, 750
RsaNI GTAC 3 cut(s) 56, 482, 749
RseI CAYNNNNRTG 2 cut(s) 556, 626
SaqAI TTAA 3 cut(s) 201, 554, 608
SatI GCNGC 2 cut(s) 533, 854
Sau96I GGNCC 3 cut(s) 44, 441, 502
ScaI AGTACT 2 cut(s) 483, 750
SchI GAGTC 2 cut(s) 255, 324
ScrFI CCNGG 2 cut(s) 449, 586
SduI GDGCHC 1 cut(s) 565
SfaNI GCATC 4 cut(s) 25, 628, 685, 840
Sfr274I CTCGAG 2 cut(s) 74, 332
SinI GGWCC 3 cut(s) 44, 441, 502
SlaI CTCGAG 2 cut(s) 74, 332
SmiMI CAYNNNNRTG 2 cut(s) 556, 626
SmlI CTYRAG 6 cut(s) 74, 318, 332, 485, 607, 886
SmoI CTYRAG 6 cut(s) 74, 318, 332, 485, 607, 886
Sse9I AATT 2 cut(s) 92, 881
SsiI CCGC 1 cut(s) 566
SspI AATATT 1 cut(s) 27
SspMI CTAG 2 cut(s) 665, 967
StyD4I CCNGG 2 cut(s) 447, 584
StyI CCWWGG 2 cut(s) 325, 498
TaaI ACNGT 4 cut(s) 196, 351, 628, 950
TaiI ACGT 2 cut(s) 345, 594
TaqI TCGA 7 cut(s) 11, 75, 138, 286, 333, 548, 960
TaqII GACCGA 1 cut(s) 61
TasI AATT 2 cut(s) 92, 881
TatI WGTACW 3 cut(s) 55, 481, 748
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 3 cut(s) 201, 554, 608
Tru9I TTAA 3 cut(s) 201, 554, 608
TscAI CASTG 4 cut(s) 37, 705, 832, 955
TseFI GTSAC 2 cut(s) 224, 246
TseI GCWGC 2 cut(s) 532, 853
Tsp45I GTSAC 2 cut(s) 224, 246
TspDTI ATGAA 3 cut(s) 105, 168, 893
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 4 cut(s) 37, 705, 832, 955
Vha464I CTTAAG 1 cut(s) 607
VpaK11BI GGWCC 3 cut(s) 44, 441, 502
XagI CCTNNNNNAGG 1 cut(s) 668
XapI RAATTY 1 cut(s) 881
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XhoI CTCGAG 2 cut(s) 74, 332
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 2 cut(s) 665, 967
ZrmI AGTACT 2 cut(s) 483, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.