Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001290

Physical Location & Seq

Genomic Coordinates Forward (+)

9037471 .. 9039319

Gene Structure 1849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG109900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAAGTTATTAGCCGTGGGAATATTCAAGAAGTCTTTGAAGCAGAGGAGTTATTTTTCGTGGGGATATGTAACAGATACTGGAGAAGTTCAAGAACTCTCTTTCACCAAAGCCAATGGTGATGCAGCTGGACCGAGATCAGTACACCGGAAAGCCTTGCTCGAGGCATTGGCAGGTGAATTACCGGTTCATTTGATCCGTTTCTCTTCCAAGATCTCTTCTATTGAAACACAACAACATGAAGGTTCATCCGTTGCCATTGTTCACGTGGAAAATGGAACTGTCATTAAAGCAAAATTTCTCATAGGGTGTGACGGGGTTCACTTAGTGGTGTCACGCTGGTTAGGACTCCGTGAGCCAGTCCTTTCAGGACGATCAGCTGCTCGTGGCTTGGCTGTGTATCCTCAAGGCCATGGACTCGAGCAGAAGGTGCGACAGTATGTAGGATCAGGCAGAAGGGCTGGCTTCGTTCCCCTCACCGACAAAGAGATCTACTGGTTCTTCACTGTCACATCTCCAGCTAAAGGGACCTCCCTAGCGAGAGATGCCGAAGATATACAAAAAGAAGTACTTGAGAATTATGCCAAGGACCTCCCACCTATATTCTTAGATGTTGTGCAGCACACAGATCTTTCGACATTAACATGGTGTAATTACCGGATGGAACAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

224

Amino Acids

24.84

Weight (kDa)

9.02

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	54 - 214	5.4e-07	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001290)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23740 FvH4_1g23750 FvH4_1g23770
malus_domestica	MD11G1231700.v1.1 MD11G1231900.v1.1
prunus_persica	Prupe.6G162100_v2.0.a1
pyrus_communis	pycom11g20520
rosa_chinensis	RchiOBHm_Chr2g0119591 RchiOBHm_Chr2g0119621 RchiOBHm_Chr2g0119641 RchiOBHm_Chr5g0013091
rosa_laevigata	RLG00000018140 RLG00000018142 RLG00000018474 RLG00000018477 RLG00000018479 RLG00000018481 RLG00000018482 RLG00000031985
rosa_multiflora	Rmu_sc0000825.1_g000006 Rmu_sc0000825.1_g000015 Rmu_sc0003158.1_g000005 Rmu_sc0003892.1_g000012 Rmu_sc0027906.1_g000001 Rmu_sc0040685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063490 Rroxscaffold_2G00124140 Rroxscaffold_2G00124230 Rroxscaffold_2G00124240 Rroxscaffold_2G00124250
rosa_rugosa	Rorug02G0222300 Rorug02G0222400 Rorug02G0222400 Rorug02G0222400 Rorug02G0222500.1 Rorug02G0223100 Rorug05G0007200
rosa_samantha	Rh2AG279800 Rh2AG280300 Rh2BG291500 Rh2BG291900 Rh2DG286500 Rh2DG286900 Rh2DG287300 Rh2DG305700 Rh2DG305900 Rh2DG306000 Rh5AG101300 Rh5BG097800 Rh5CG109900 Rh5DG096900
rosa_wichuraiana	Rw2G022360 Rw2G022400 Rw2G022410 Rw5G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	164
AclWI	GGATC	2 cut(s)	190, 454
AcsI	RAATTY	1 cut(s)	296
AcvI	CACGTG	1 cut(s)	268
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	2 cut(s)	144, 570
AfiI	CCNNNNNNNGG	1 cut(s)	524
AgeI	ACCGGT	1 cut(s)	184
AgsI	TTSAA	4 cut(s)	28, 40, 92, 227
AluBI	AGCT	3 cut(s)	128, 380, 521
AluI	AGCT	3 cut(s)	128, 380, 521
AlwI	GGATC	2 cut(s)	190, 454
AlwNI	CAGNNNCTG	1 cut(s)	80
Ama87I	CYCGRG	2 cut(s)	161, 419
AoxI	GGCC	1 cut(s)	409
ApeKI	GCWGC	3 cut(s)	125, 380, 619
ApoI	RAATTY	1 cut(s)	296
AsiGI	ACCGGT	1 cut(s)	184
AspS9I	GGNCC	3 cut(s)	131, 528, 589
AsuHPI	GGTGA	4 cut(s)	97, 131, 188, 469
AvaI	CYCGRG	2 cut(s)	161, 419
AvaII	GGWCC	3 cut(s)	131, 528, 589
BauI	CACGAG	1 cut(s)	384
BbrPI	CACGTG	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	137, 367, 631
BccI	CCATC	1 cut(s)	655
BciVI	GTATCC	1 cut(s)	411
BfaI	CTAG	1 cut(s)	536
BfuAI	ACCTGC	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	411
BglII	AGATCT	3 cut(s)	213, 489, 628
BisI	GCNGC	3 cut(s)	126, 381, 620
BlsI	GCNGC	3 cut(s)	127, 382, 621
BmcAI	AGTACT	1 cut(s)	570
Bme18I	GGWCC	3 cut(s)	131, 528, 589
BmeT110I	CYCGRG	2 cut(s)	161, 419
BmgT120I	GGNCC	3 cut(s)	131, 528, 589
BmiI	GGNNCC	1 cut(s)	529
BmsI	GCATC	2 cut(s)	112, 535
BpmI	CTGGAG	2 cut(s)	102, 501
BpuEI	CTTGAG	2 cut(s)	390, 593
BsaAI	YACGTR	1 cut(s)	268
BsaJI	CCNNGG	3 cut(s)	15, 412, 585
BsaWI	WCCGGW	3 cut(s)	147, 184, 657
Bsc4I	CCNNNNNNNGG	1 cut(s)	524
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	3 cut(s)	85, 359, 500
BseDI	CCNNGG	3 cut(s)	15, 412, 585
BseGI	GGATG	2 cut(s)	248, 666
BseLI	CCNNNNNNNGG	1 cut(s)	524
BseNI	ACTGG	3 cut(s)	85, 359, 500
BseRI	GAGGAG	1 cut(s)	61
BseXI	GCAGC	3 cut(s)	137, 367, 631
BsgI	GTGCAG	1 cut(s)	638
BshFI	GGCC	1 cut(s)	411
BshTI	ACCGGT	1 cut(s)	184
BsiHKCI	CYCGRG	2 cut(s)	161, 419
BsiSI	CCGG	3 cut(s)	148, 185, 658
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	1 cut(s)	524
BsmFI	GGGAC	1 cut(s)	541
BsnI	GGCC	1 cut(s)	411
BsoBI	CYCGRG	2 cut(s)	161, 419
Bsp143I	GATC	7 cut(s)	137, 195, 213, 374, 446, 489, 628
Bsp19I	CCATGG	1 cut(s)	412
BspANI	GGCC	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	529
BspMI	ACCTGC	1 cut(s)	164
BspPI	GGATC	2 cut(s)	190, 454
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	3 cut(s)	85, 359, 500
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	3 cut(s)	15, 412, 585
BssMI	GATC	7 cut(s)	137, 195, 213, 374, 446, 489, 628
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	412, 585
Bst2BI	CACGAG	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	283, 438, 508
Bst6I	CTCTTC	2 cut(s)	211, 223
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	2 cut(s)	325, 607
BstDSI	CCRYGG	2 cut(s)	15, 412
BstF5I	GGATG	2 cut(s)	248, 666
BstKTI	GATC	7 cut(s)	140, 198, 216, 377, 449, 492, 631
BstMBI	GATC	7 cut(s)	137, 195, 213, 374, 446, 489, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	430, 545
BstV1I	GCAGC	3 cut(s)	137, 367, 631
BstX2I	RGATCY	3 cut(s)	213, 489, 628
BstYI	RGATCY	3 cut(s)	213, 489, 628
BsuI	GTATCC	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	411
BtgI	CCRYGG	2 cut(s)	15, 412
BtsCI	GGATG	2 cut(s)	248, 666
BtsIMutI	CAGTG	1 cut(s)	504
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	463
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	3 cut(s)	131, 528, 589
Csp6I	GTAC	2 cut(s)	143, 569
CspAI	ACCGGT	1 cut(s)	184
CviAII	CATG	3 cut(s)	239, 413, 645
CviQI	GTAC	2 cut(s)	143, 569
DdeI	CTNAG	2 cut(s)	325, 607
DpnI	GATC	7 cut(s)	139, 197, 215, 376, 448, 491, 630
DpnII	GATC	7 cut(s)	137, 195, 213, 374, 446, 489, 628
DraIII	CACNNNGTG	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	211, 223
EarI	CTCTTC	2 cut(s)	211, 223
Eco130I	CCWWGG	2 cut(s)	412, 585
Eco47I	GGWCC	3 cut(s)	131, 528, 589
Eco72I	CACGTG	1 cut(s)	268
Eco88I	CYCGRG	2 cut(s)	161, 419
EcoO109I	RGGNCCY	2 cut(s)	528, 589
EcoT14I	CCWWGG	2 cut(s)	412, 585
ErhI	CCWWGG	2 cut(s)	412, 585
FaeI	CATG	3 cut(s)	242, 416, 648
FaiI	YATR	9 cut(s)	69, 240, 305, 414, 441, 557, 582, 602, 646
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	3 cut(s)	238, 412, 644
Fnu4HI	GCNGC	3 cut(s)	126, 381, 620
FokI	GGATG	1 cut(s)	235
Fsp4HI	GCNGC	3 cut(s)	126, 381, 620
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	3 cut(s)	126, 381, 620
GsuI	CTGGAG	2 cut(s)	102, 501
HaeIII	GGCC	1 cut(s)	411
HapII	CCGG	3 cut(s)	148, 185, 658
Hin1II	CATG	3 cut(s)	242, 416, 648
HinfI	GANTC	2 cut(s)	348, 417
HpaII	CCGG	3 cut(s)	148, 185, 658
HphI	GGTGA	4 cut(s)	97, 131, 188, 469
Hpy166II	GTNNAC	3 cut(s)	145, 265, 322
Hpy188III	TCNNGA	3 cut(s)	28, 92, 369
Hpy8I	GTNNAC	3 cut(s)	145, 265, 322
HpyAV	CCTTC	3 cut(s)	236, 421, 450
HpyCH4III	ACNGT	3 cut(s)	283, 438, 508
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	125, 619
HpyF10VI	GCNNNNNNNGC	2 cut(s)	430, 545
HpyF3I	CTNAG	2 cut(s)	325, 607
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	3 cut(s)	242, 416, 648
Kzo9I	GATC	7 cut(s)	137, 195, 213, 374, 446, 489, 628
Lsp1109I	GCAGC	3 cut(s)	137, 367, 631
LweI	GCATC	2 cut(s)	112, 535
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	4 cut(s)	70, 311, 333, 508
MalI	GATC	7 cut(s)	139, 197, 215, 376, 448, 491, 630
MboI	GATC	7 cut(s)	137, 195, 213, 374, 446, 489, 628
MboII	GAAGA	4 cut(s)	198, 210, 493, 563
MflI	RGATCY	3 cut(s)	213, 489, 628
MluCI	AATT	5 cut(s)	179, 296, 577, 652, 670
MlyI	GAGTC	2 cut(s)	342, 411
MnlI	CCTC	6 cut(s)	39, 157, 414, 485, 541, 602
MseI	TTAA	2 cut(s)	288, 641
MslI	CAYNNNNRTG	1 cut(s)	643
MspA1I	CMGCKG	2 cut(s)	128, 380
MspI	CCGG	3 cut(s)	148, 185, 658
MwoI	GCNNNNNNNGC	2 cut(s)	430, 545
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	7 cut(s)	137, 195, 213, 374, 446, 489, 628
NlaIII	CATG	3 cut(s)	242, 416, 648
NlaIV	GGNNCC	1 cut(s)	529
NmuCI	GTSAC	3 cut(s)	311, 333, 508
PaeR7I	CTCGAG	2 cut(s)	161, 419
PaqCI	CACCTGC	1 cut(s)	164
PinAI	ACCGGT	1 cut(s)	184
PkrI	GCNGC	3 cut(s)	127, 382, 621
PleI	GAGTC	2 cut(s)	342, 411
PmaCI	CACGTG	1 cut(s)	268
PmlI	CACGTG	1 cut(s)	268
PpsI	GAGTC	2 cut(s)	342, 411
Ppu21I	YACGTR	1 cut(s)	268
PpuMI	RGGWCCY	2 cut(s)	528, 589
Psp5II	RGGWCCY	2 cut(s)	528, 589
PspCI	CACGTG	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	529
PspPI	GGNCC	3 cut(s)	131, 528, 589
PspPPI	RGGWCCY	2 cut(s)	528, 589
PspXI	VCTCGAGB	2 cut(s)	161, 419
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	3 cut(s)	213, 489, 628
PvuII	CAGCTG	2 cut(s)	128, 380
RsaI	GTAC	2 cut(s)	144, 570
RsaNI	GTAC	2 cut(s)	143, 569
RseI	CAYNNNNRTG	1 cut(s)	643
SaqAI	TTAA	2 cut(s)	288, 641
SatI	GCNGC	3 cut(s)	126, 381, 620
Sau3AI	GATC	7 cut(s)	137, 195, 213, 374, 446, 489, 628
Sau96I	GGNCC	3 cut(s)	131, 528, 589
ScaI	AGTACT	1 cut(s)	570
SchI	GAGTC	2 cut(s)	342, 411
SfaNI	GCATC	2 cut(s)	112, 535
Sfr274I	CTCGAG	2 cut(s)	161, 419
SinI	GGWCC	3 cut(s)	131, 528, 589
SlaI	CTCGAG	2 cut(s)	161, 419
SmiMI	CAYNNNNRTG	1 cut(s)	643
SmlI	CTYRAG	4 cut(s)	161, 405, 419, 572
SmoI	CTYRAG	4 cut(s)	161, 405, 419, 572
Sse9I	AATT	5 cut(s)	179, 296, 577, 652, 670
SspI	AATATT	1 cut(s)	24
SspMI	CTAG	1 cut(s)	536
StyI	CCWWGG	2 cut(s)	412, 585
TaaI	ACNGT	3 cut(s)	283, 438, 508
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	3 cut(s)	162, 420, 635
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	5 cut(s)	179, 296, 577, 652, 670
TatI	WGTACW	2 cut(s)	142, 568
Tru1I	TTAA	2 cut(s)	288, 641
Tru9I	TTAA	2 cut(s)	288, 641
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	3 cut(s)	311, 333, 508
TseI	GCWGC	3 cut(s)	125, 380, 619
Tsp45I	GTSAC	3 cut(s)	311, 333, 508
TspDTI	ATGAA	4 cut(s)	17, 179, 237, 255
TspGWI	ACGGA	3 cut(s)	188, 241, 341
TspRI	CASTG	1 cut(s)	511
VpaK11BI	GGWCC	3 cut(s)	131, 528, 589
XapI	RAATTY	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XhoI	CTCGAG	2 cut(s)	161, 419
XspI	CTAG	1 cut(s)	536
ZrmI	AGTACT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.