Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001290

Physical Location & Seq

Genomic Coordinates Forward (+)

30621701 .. 30638695

Gene Structure 16995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018482

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTTTGTGTTTGTTAGAAAGAGAAATGGAGTCGAAAAGAGAGCAAGAGAGCTATCAGAGAGAGAGAGAGTTAGACAGGTGACGATGGAAACAACGGTGGAGGATTTGGTGATAGTGGGGGCAGGGATAGCCGGTTTGGCCACGGCAGTGGCGTTGAAGAGAGCAGGAATTGAAGCGCTTGTGTTGGAGAGATCCGAAGGGCTGAGAGCCACAGGTGCAGCCTTGACTCTATACCCCAACGCTTGGGGACATATAATTTATCTTGACACAGGAGAAGTTCATGAAGTTTCTAGACCCATAACCAATGAGGTTCCAGTTGGACCGAGATGTTTACACCGGAAAGCGTTACTCGAGGCCTTGGCAGATGAATTAACAATTCATTCAGTTCGTTTCTCTTCTAAGATCTCAGCTATTGATACCCAACAACATGAAGGTTCATCCCTTGCCATTGTTCACTTGGAAAATGGAACTATCATCAAAACAAAGGTTCTGATAGGGTGTGACGGTGTGCACTCGGTGGTGTCACATTGGTTAGGACTCAGTGAATCAGTCCTTTCAGGTCGATCAGCGGTTCATGGATTGGCTGTGTTTCCTCAAGGCCATGGACTCGACCAAAACTTCCGACAGTACATAGGAATGGGCAGAAGAGCTAGTTTGATTCCCGTTTCTGACAAAGAAAAGCAAGGCCTTCTCGATCCACTGCCAATTGCTTGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

240

Amino Acids

25.94

Weight (kDa)

7.83

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	35 - 76	1.3e-06	FAD dependent oxidoreductase
NAD_binding_8	PF13450	38 - 68	3.9e-06	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001290)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23740 FvH4_1g23750 FvH4_1g23770
malus_domestica	MD11G1231700.v1.1 MD11G1231900.v1.1
prunus_persica	Prupe.6G162100_v2.0.a1
pyrus_communis	pycom11g20520
rosa_chinensis	RchiOBHm_Chr2g0119591 RchiOBHm_Chr2g0119621 RchiOBHm_Chr2g0119641 RchiOBHm_Chr5g0013091
rosa_laevigata	RLG00000018140 RLG00000018142 RLG00000018474 RLG00000018477 RLG00000018479 RLG00000018481 RLG00000018482 RLG00000031985
rosa_multiflora	Rmu_sc0000825.1_g000006 Rmu_sc0000825.1_g000015 Rmu_sc0003158.1_g000005 Rmu_sc0003892.1_g000012 Rmu_sc0027906.1_g000001 Rmu_sc0040685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063490 Rroxscaffold_2G00124140 Rroxscaffold_2G00124230 Rroxscaffold_2G00124240 Rroxscaffold_2G00124250
rosa_rugosa	Rorug02G0222300 Rorug02G0222400 Rorug02G0222400 Rorug02G0222400 Rorug02G0222500.1 Rorug02G0223100 Rorug05G0007200
rosa_samantha	Rh2AG279800 Rh2AG280300 Rh2BG291500 Rh2BG291900 Rh2DG286500 Rh2DG286900 Rh2DG287300 Rh2DG305700 Rh2DG305900 Rh2DG306000 Rh5AG101300 Rh5BG097800 Rh5CG109900 Rh5DG096900
rosa_wichuraiana	Rw2G022360 Rw2G022400 Rw2G022410 Rw5G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	243
AciI	CCGC	1 cut(s)	569
AclWI	GGATC	2 cut(s)	186, 689
AcoI	YGGCCR	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	517
AfaI	GTAC	1 cut(s)	629
AfeI	AGCGCT	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	157, 173
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	3 cut(s)	52, 410, 650
AluI	AGCT	3 cut(s)	52, 410, 650
Alw21I	GWGCWC	1 cut(s)	513
Alw44I	GTGCAC	1 cut(s)	509
AlwI	GGATC	2 cut(s)	186, 689
Ama87I	CYCGRG	1 cut(s)	350
Aor51HI	AGCGCT	1 cut(s)	177
AoxI	GGCC	4 cut(s)	138, 354, 598, 685
ApaLI	GTGCAC	1 cut(s)	509
ApeKI	GCWGC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	91, 121
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	513
BalI	TGGCCA	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	159
BfaI	CTAG	2 cut(s)	291, 651
BfmI	CTRYAG	1 cut(s)	716
BfoI	RGCGCY	1 cut(s)	179
BglI	GCCNNNNNGGC	1 cut(s)	137
BglII	AGATCT	1 cut(s)	402
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	320
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	579
BsaJI	CCNNGG	3 cut(s)	141, 357, 601
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	314
BseDI	CCNNGG	3 cut(s)	141, 357, 601
BseGI	GGATG	1 cut(s)	437
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMII	CTCAG	3 cut(s)	194, 420, 553
BseNI	ACTGG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	513
BseXI	GCAGC	1 cut(s)	230
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	4 cut(s)	140, 356, 600, 687
BsiHKAI	GWGCWC	1 cut(s)	513
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	132, 337
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	4 cut(s)	140, 356, 600, 687
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	4 cut(s)	191, 402, 563, 694
Bsp19I	CCATGG	1 cut(s)	601
BspACI	CCGC	1 cut(s)	569
BspANI	GGCC	4 cut(s)	140, 356, 600, 687
BspCNI	CTCAG	3 cut(s)	195, 419, 552
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	2 cut(s)	186, 689
BspQI	GCTCTTC	1 cut(s)	640
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	3 cut(s)	141, 357, 601
BssMI	GATC	4 cut(s)	191, 402, 563, 694
BssT1I	CCWWGG	2 cut(s)	357, 601
Bst4CI	ACNGT	3 cut(s)	97, 506, 627
Bst6I	CTCTTC	3 cut(s)	152, 400, 640
BstDEI	CTNAG	4 cut(s)	203, 399, 406, 539
BstDSI	CCRYGG	2 cut(s)	141, 601
BstF5I	GGATG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	4 cut(s)	194, 405, 566, 697
BstMBI	GATC	4 cut(s)	191, 402, 563, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 137, 215
BstSFI	CTRYAG	1 cut(s)	716
BstSLI	GKGCMC	1 cut(s)	513
BstV1I	GCAGC	1 cut(s)	230
BstX2I	RGATCY	2 cut(s)	191, 402
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	2 cut(s)	191, 402
BsuRI	GGCC	4 cut(s)	140, 356, 600, 687
BtgI	CCRYGG	2 cut(s)	141, 601
BtsCI	GGATG	1 cut(s)	437
BtsI	GCAGTG	2 cut(s)	153, 698
BtsIMutI	CAGTG	3 cut(s)	153, 547, 698
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	4 cut(s)	281, 428, 575, 602
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	4 cut(s)	203, 399, 406, 539
DpnI	GATC	4 cut(s)	193, 404, 565, 696
DpnII	GATC	4 cut(s)	191, 402, 563, 694
DraIII	CACNNNGTG	1 cut(s)	517
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	3 cut(s)	152, 400, 640
EarI	CTCTTC	3 cut(s)	152, 400, 640
Eco130I	CCWWGG	2 cut(s)	357, 601
Eco147I	AGGCCT	2 cut(s)	356, 687
Eco47I	GGWCC	1 cut(s)	320
Eco47III	AGCGCT	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	350
EcoT14I	CCWWGG	2 cut(s)	357, 601
ErhI	CCWWGG	2 cut(s)	357, 601
FaeI	CATG	4 cut(s)	284, 431, 578, 605
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	4 cut(s)	280, 427, 574, 601
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	424
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	2 cut(s)	291, 651
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	219
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	4 cut(s)	140, 356, 600, 687
HapII	CCGG	2 cut(s)	132, 337
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	4 cut(s)	284, 431, 578, 605
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	6 cut(s)	30, 226, 537, 545, 606, 658
HpaII	CCGG	2 cut(s)	132, 337
HphI	GGTGA	2 cut(s)	91, 121
Hpy166II	GTNNAC	3 cut(s)	332, 454, 511
Hpy188I	TCNGA	5 cut(s)	58, 196, 492, 623, 670
Hpy188III	TCNNGA	4 cut(s)	263, 281, 291, 692
Hpy8I	GTNNAC	3 cut(s)	332, 454, 511
HpyAV	CCTTC	3 cut(s)	191, 425, 698
HpyCH4III	ACNGT	3 cut(s)	97, 506, 627
HpyCH4V	TGCA	2 cut(s)	218, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 137, 215
HpyF3I	CTNAG	4 cut(s)	203, 399, 406, 539
Hsp92II	CATG	4 cut(s)	284, 431, 578, 605
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	4 cut(s)	191, 402, 563, 694
LguI	GCTCTTC	1 cut(s)	640
LpnPI	CCDG	9 cut(s)	62, 108, 145, 150, 198, 255, 327, 350, 543
Lsp1109I	GCAGC	1 cut(s)	230
MaeI	CTAG	2 cut(s)	291, 651
MaeIII	GTNAC	4 cut(s)	79, 345, 500, 522
MalI	GATC	4 cut(s)	193, 404, 565, 696
MboI	GATC	4 cut(s)	191, 402, 563, 694
MboII	GAAGA	3 cut(s)	169, 387, 657
MfeI	CAATTG	1 cut(s)	705
MflI	RGATCY	2 cut(s)	191, 402
MhlI	GDGCHC	1 cut(s)	513
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	5 cut(s)	168, 255, 368, 375, 705
MluNI	TGGCCA	1 cut(s)	140
MlyI	GAGTC	4 cut(s)	39, 220, 531, 600
MmeI	TCCRAC	3 cut(s)	165, 298, 646
MnlI	CCTC	4 cut(s)	94, 301, 346, 603
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	1 cut(s)	371
MslI	CAYNNNNRTG	2 cut(s)	146, 635
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	2 cut(s)	132, 337
MunI	CAATTG	1 cut(s)	705
MwoI	GCNNNNNNNGC	3 cut(s)	128, 137, 215
NcoI	CCATGG	1 cut(s)	601
NdeII	GATC	4 cut(s)	191, 402, 563, 694
NlaIII	CATG	4 cut(s)	284, 431, 578, 605
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	3 cut(s)	79, 500, 522
OliI	CACNNNNGTG	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	350
PagI	TCATGA	1 cut(s)	280
PceI	AGGCCT	2 cut(s)	356, 687
PciSI	GCTCTTC	1 cut(s)	640
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	545, 658
PflMI	CCANNNNNTGG	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	4 cut(s)	38, 220, 531, 600
PpsI	GAGTC	4 cut(s)	38, 220, 531, 600
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	320
PspXI	VCTCGAGB	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	191, 402
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
RseI	CAYNNNNRTG	2 cut(s)	146, 635
SapI	GCTCTTC	1 cut(s)	640
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	4 cut(s)	191, 402, 563, 694
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	4 cut(s)	39, 220, 531, 600
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	9 cut(s)	54, 81, 217, 312, 412, 436, 489, 562, 652
SfcI	CTRYAG	1 cut(s)	716
Sfr274I	CTCGAG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	320
SlaI	CTCGAG	1 cut(s)	350
SmiMI	CAYNNNNRTG	2 cut(s)	146, 635
SmlI	CTYRAG	2 cut(s)	350, 594
SmoI	CTYRAG	2 cut(s)	350, 594
Sse9I	AATT	5 cut(s)	168, 255, 368, 375, 705
SseBI	AGGCCT	2 cut(s)	356, 687
SsiI	CCGC	1 cut(s)	569
SspMI	CTAG	2 cut(s)	291, 651
StuI	AGGCCT	2 cut(s)	356, 687
StyI	CCWWGG	2 cut(s)	357, 601
TaaI	ACNGT	3 cut(s)	97, 506, 627
TaqI	TCGA	5 cut(s)	33, 351, 562, 609, 693
TaqII	GACCGA	1 cut(s)	337
TasI	AATT	5 cut(s)	168, 255, 368, 375, 705
TatI	WGTACW	1 cut(s)	627
TfiI	GAWTC	2 cut(s)	545, 658
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	3 cut(s)	153, 547, 705
TseFI	GTSAC	3 cut(s)	79, 500, 522
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	3 cut(s)	79, 500, 522
TspDTI	ATGAA	7 cut(s)	269, 297, 368, 381, 426, 444, 563
TspRI	CASTG	3 cut(s)	153, 547, 705
Van91I	CCANNNNNTGG	1 cut(s)	243
VneI	GTGCAC	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	320
XbaI	TCTAGA	1 cut(s)	290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	454
XhoI	CTCGAG	1 cut(s)	350
XspI	CTAG	2 cut(s)	291, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.