Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001290

Physical Location & Seq

Genomic Coordinates Forward (+)

30503489 .. 30506990

Gene Structure 3502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018477

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGGCACAACCGTGGAGGATGTGGTGATAGTGGGAGGAGGGATAGCCGGGCTGGCTACGGCGGTGGCGCTAAAGAGAGCTGGAATAGAAGCGTTGGTGTTGGAGAGATCGGAAGGGCTGCGAGCCACCGGTGCAGCCTTGACTCTATTCCCAAACGCCTGGGTCGCTCTTGATGCCTTGGGGGTTTCTCATAAGCTTGCTTCATATACCTCCTCTCTCAAGGGATATGTGACTGATGTTGATACTGGAGAAGTTCAAGAAATCTCTTTCACCAAAGCCAATGGTGATGCAGTTGGACCGAGATCAGTACACCGGAAAGCCTTGCTCGAGGCTTTGGCAGATGAATTACCTGTTCATTCAATCCGTTTCTCTTCCAAGATCTCCGCTATCGAAACCCAACAACATGAAGGTTCATCCATTGCCATTGTTCACATGGAAAATGGAACTGTCATTAAAGCAAAGGTTCTCATAGGTTGTGACGGGGTTCACTCAGTTGTGTCACGCTGGTTAGGACTCTCTGAACCGGTCCTTTCAGGTCGATCAGCTGTTCGTGGCTTAGCTGTGTATCCTCAAGGCCATGGACTCGAGAAGAACGTGCAACAGTATGTAGGATCAGGTAGAAGGGCTGGCTTTGTTCCCCTCACCGACAAAGAGATCTACTGGTTCTTCAGTTGTACATCTCCGGCTAAAGGGGCCTTCCTGGCAGAACATCCGGAAGATATACAAAAAGAAGTACTTGAGAATCATGCCAAGGACCTCCCACCTATATTCTCAGATGTTGTGCAGCATTCAGATCTTTCGACATTAACATGGGCTCCGCTGAAGTTTAGGTATCCCTGGAACGTAGTGTTTGGGAACTTAAGCAAGCAAAACATCACGGTGGCCGGCGATGCCATGCACCCCATGACACCTGACCTAGCACAGGGGGGTTGCTCATCATTAGAAGATGCAGTGATCTTAGGCAGGCATATTGGGACATCCTTTGTAAAAAATGGACGAGTACTTGTGCAGAAAGAGATGAGTGAAGTATTGGGCAAATATGTGGAAGAAAGAAGGTGGCGCGTCGCTTTGTTGATCACTGGATCATACATATCAGGATGGATGCAGCAGGCAGGCTCTGGATGGGGTATGAAATTCTTGAGAGACGCCATATTTTACAACCCACCCTATTCTAAAATCCTAGCTCCGCCATTGCCTAGGATGGTTAGATACGTATACTATGACAGTGGAAAACTCGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

415

Amino Acids

44.96

Weight (kDa)

7.21

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	7 - 355	5.6e-26	FAD binding domain
DAO	PF01266	7 - 54	1.7e-07	FAD dependent oxidoreductase
Lycopene_cycl	PF05834	7 - 164	4.8e-06	Lycopene cyclase protein
NAD_binding_8	PF13450	10 - 40	8e-06	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001290)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23740 FvH4_1g23750 FvH4_1g23770
malus_domestica	MD11G1231700.v1.1 MD11G1231900.v1.1
prunus_persica	Prupe.6G162100_v2.0.a1
pyrus_communis	pycom11g20520
rosa_chinensis	RchiOBHm_Chr2g0119591 RchiOBHm_Chr2g0119621 RchiOBHm_Chr2g0119641 RchiOBHm_Chr5g0013091
rosa_laevigata	RLG00000018140 RLG00000018142 RLG00000018474 RLG00000018477 RLG00000018479 RLG00000018481 RLG00000018482 RLG00000031985
rosa_multiflora	Rmu_sc0000825.1_g000006 Rmu_sc0000825.1_g000015 Rmu_sc0003158.1_g000005 Rmu_sc0003892.1_g000012 Rmu_sc0027906.1_g000001 Rmu_sc0040685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063490 Rroxscaffold_2G00124140 Rroxscaffold_2G00124230 Rroxscaffold_2G00124240 Rroxscaffold_2G00124250
rosa_rugosa	Rorug02G0222300 Rorug02G0222400 Rorug02G0222400 Rorug02G0222400 Rorug02G0222500.1 Rorug02G0223100 Rorug05G0007200
rosa_samantha	Rh2AG279800 Rh2AG280300 Rh2BG291500 Rh2BG291900 Rh2DG286500 Rh2DG286900 Rh2DG287300 Rh2DG305700 Rh2DG305900 Rh2DG306000 Rh5AG101300 Rh5BG097800 Rh5CG109900 Rh5DG096900
rosa_wichuraiana	Rw2G022360 Rw2G022400 Rw2G022410 Rw5G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1215
AccII	CGCG	1 cut(s)	1062
AccIII	TCCGGA	1 cut(s)	712
AciI	CCGC	4 cut(s)	62, 384, 818, 1187
AclWI	GGATC	2 cut(s)	619, 1090
AcoI	YGGCCR	1 cut(s)	882
AcsI	RAATTY	1 cut(s)	1133
AcuI	CTGAAG	2 cut(s)	652, 842
AcyI	GRCGYC	1 cut(s)	1146
AfaI	GTAC	4 cut(s)	309, 676, 735, 1002
AfiI	CCNNNNNNNGG	2 cut(s)	689, 922
AflII	CTTAAG	1 cut(s)	859
AgeI	ACCGGT	2 cut(s)	128, 523
AgsI	TTSAA	2 cut(s)	257, 360
AjnI	CCWGG	3 cut(s)	158, 699, 836
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	5 cut(s)	80, 196, 545, 560, 1184
AluI	AGCT	5 cut(s)	80, 196, 545, 560, 1184
Alw26I	GTCTC	1 cut(s)	1137
AlwI	GGATC	2 cut(s)	619, 1090
AlwNI	CAGNNNCTG	1 cut(s)	1118
Ama87I	CYCGRG	2 cut(s)	326, 584
Aor13HI	TCCGGA	1 cut(s)	712
AoxI	GGCC	3 cut(s)	574, 693, 882
ApeKI	GCWGC	4 cut(s)	118, 134, 784, 1105
ApoI	RAATTY	1 cut(s)	1133
AsiGI	ACCGGT	2 cut(s)	128, 523
AspA2I	CCTAGG	1 cut(s)	1196
AspLEI	GCGC	2 cut(s)	70, 1062
AspS9I	GGNCC	4 cut(s)	296, 526, 693, 754
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	4 cut(s)	37, 262, 296, 634
AvaI	CYCGRG	2 cut(s)	326, 584
AvaII	GGWCC	3 cut(s)	296, 526, 754
AvrII	CCTAGG	1 cut(s)	1196
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	817
BbvI	GCAGC	4 cut(s)	105, 146, 796, 1117
BccI	CCATC	3 cut(s)	1092, 1116, 1195
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	3 cut(s)	160, 701, 838
BciVI	GTATCC	2 cut(s)	576, 843
BclI	TGATCA	1 cut(s)	1074
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	1137
BfaI	CTAG	4 cut(s)	917, 1181, 1197, 1243
BfoI	RGCGCY	1 cut(s)	71
BfrI	CTTAAG	1 cut(s)	859
BfuI	GTATCC	2 cut(s)	576, 843
BglI	GCCNNNNNGGC	2 cut(s)	53, 701
BglII	AGATCT	3 cut(s)	378, 654, 793
BisI	GCNGC	4 cut(s)	119, 135, 785, 1106
BlnI	CCTAGG	1 cut(s)	1196
BlpI	GCTNAGC	1 cut(s)	556
BlsI	GCNGC	4 cut(s)	120, 136, 786, 1107
BmcAI	AGTACT	2 cut(s)	735, 1002
Bme1390I	CCNGG	4 cut(s)	49, 160, 701, 838
Bme18I	GGWCC	3 cut(s)	296, 526, 754
BmeT110I	CYCGRG	2 cut(s)	326, 584
BmgT120I	GGNCC	4 cut(s)	296, 526, 693, 754
BmiI	GGNNCC	2 cut(s)	694, 816
BmrFI	CCNGG	4 cut(s)	49, 160, 701, 838
BmsI	GCATC	5 cut(s)	163, 277, 880, 937, 1092
BpmI	CTGGAG	1 cut(s)	267
Bpu1102I	GCTNAGC	1 cut(s)	556
BpuEI	CTTGAG	4 cut(s)	203, 555, 758, 1159
BpuMI	CCSGG	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	1213
BsaHI	GRCGYC	1 cut(s)	1146
BsaJI	CCNNGG	7 cut(s)	12, 159, 177, 577, 750, 836, 1196
BsaWI	WCCGGW	4 cut(s)	128, 312, 523, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	799, 829
Bsc4I	CCNNNNNNNGG	2 cut(s)	689, 922
Bse118I	RCCGGY	3 cut(s)	128, 523, 884
Bse1I	ACTGG	3 cut(s)	250, 665, 1084
Bse3DI	GCAATG	2 cut(s)	417, 1190
BseAI	TCCGGA	1 cut(s)	712
BseBI	CCWGG	3 cut(s)	160, 701, 838
BseDI	CCNNGG	7 cut(s)	12, 159, 177, 577, 750, 836, 1196
BseGI	GGATG	8 cut(s)	25, 413, 709, 977, 1103, 1107, 1127, 1206
BseLI	CCNNNNNNNGG	2 cut(s)	689, 922
BseMI	GCAATG	2 cut(s)	417, 1190
BseMII	CTCAG	2 cut(s)	504, 786
BseNI	ACTGG	3 cut(s)	250, 665, 1084
BseRI	GAGGAG	2 cut(s)	51, 202
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	4 cut(s)	105, 146, 796, 1117
BsgI	GTGCAG	3 cut(s)	153, 803, 1028
Bsh1236I	CGCG	1 cut(s)	1062
BshFI	GGCC	3 cut(s)	576, 695, 884
BshTI	ACCGGT	2 cut(s)	128, 523
BsiHKCI	CYCGRG	2 cut(s)	326, 584
BsiSI	CCGG	7 cut(s)	48, 129, 313, 524, 683, 713, 885
BslFI	GGGAC	1 cut(s)	988
BslI	CCNNNNNNNGG	2 cut(s)	689, 922
BsmAI	GTCTC	1 cut(s)	1137
BsmBI	CGTCTC	1 cut(s)	1137
BsmFI	GGGAC	1 cut(s)	988
BsmI	GAATGC	1 cut(s)	787
BsnI	GGCC	3 cut(s)	576, 695, 884
BsoBI	CYCGRG	2 cut(s)	326, 584
Bsp1286I	GDGCHC	2 cut(s)	8, 817
Bsp13I	TCCGGA	1 cut(s)	712
Bsp1407I	TGTACA	1 cut(s)	674
Bsp1720I	GCTNAGC	1 cut(s)	556
Bsp19I	CCATGG	1 cut(s)	577
BspACI	CCGC	4 cut(s)	62, 384, 818, 1187
BspANI	GGCC	3 cut(s)	576, 695, 884
BspCNI	CTCAG	2 cut(s)	503, 785
BspEI	TCCGGA	1 cut(s)	712
BspFNI	CGCG	1 cut(s)	1062
BspLI	GGNNCC	2 cut(s)	694, 816
BspPI	GGATC	2 cut(s)	619, 1090
BspTI	CTTAAG	1 cut(s)	859
BsrDI	GCAATG	2 cut(s)	417, 1190
BsrFI	RCCGGY	3 cut(s)	128, 523, 884
BsrGI	TGTACA	1 cut(s)	674
BsrI	ACTGG	3 cut(s)	250, 665, 1084
BssAI	RCCGGY	3 cut(s)	128, 523, 884
BssECI	CCNNGG	7 cut(s)	12, 159, 177, 577, 750, 836, 1196
BssNAI	GTATAC	1 cut(s)	1216
BssNI	GRCGYC	1 cut(s)	1146
BssT1I	CCWWGG	4 cut(s)	177, 577, 750, 1196
Bst1107I	GTATAC	1 cut(s)	1216
Bst2UI	CCWGG	3 cut(s)	160, 701, 838
Bst4CI	ACNGT	5 cut(s)	13, 448, 603, 880, 1226
Bst6I	CTCTTC	1 cut(s)	376
BstACI	GRCGYC	1 cut(s)	1146
BstAFI	CTTAAG	1 cut(s)	859
BstAUI	TGTACA	1 cut(s)	674
BstBAI	YACGTR	1 cut(s)	1213
BstC8I	GCNNGC	9 cut(s)	54, 123, 198, 628, 866, 886, 965, 1110, 1114
BstDEI	CTNAG	4 cut(s)	490, 556, 772, 958
BstDSI	CCRYGG	2 cut(s)	12, 577
BstENI	CCTNNNNNAGG	1 cut(s)	920
BstF5I	GGATG	8 cut(s)	25, 413, 709, 977, 1103, 1107, 1127, 1206
BstFNI	CGCG	1 cut(s)	1062
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	70, 1062
BstMAI	GTCTC	1 cut(s)	1137
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 131, 164, 173, 692, 701, 890
BstNI	CCWGG	3 cut(s)	160, 701, 838
BstSCI	CCNGG	4 cut(s)	47, 158, 699, 836
BstSLI	GKGCMC	1 cut(s)	8
BstSNI	TACGTA	1 cut(s)	1213
BstUI	CGCG	1 cut(s)	1062
BstV1I	GCAGC	4 cut(s)	105, 146, 796, 1117
BstX2I	RGATCY	3 cut(s)	378, 654, 793
BstXI	CCANNNNNNTGG	1 cut(s)	159
BstYI	RGATCY	3 cut(s)	378, 654, 793
BstZ17I	GTATAC	1 cut(s)	1216
BsuI	GTATCC	2 cut(s)	576, 843
BsuRI	GGCC	3 cut(s)	576, 695, 884
BtgI	CCRYGG	2 cut(s)	12, 577
BtgZI	GCGATG	1 cut(s)	903
BtsCI	GGATG	8 cut(s)	25, 413, 709, 977, 1103, 1107, 1127, 1206
BtsI	GCAGTG	1 cut(s)	957
BtsIMutI	CAGTG	3 cut(s)	957, 1077, 1231
Cac8I	GCNNGC	9 cut(s)	54, 123, 198, 628, 866, 886, 965, 1110, 1114
CaiI	CAGNNNCTG	1 cut(s)	1118
CfoI	GCGC	2 cut(s)	70, 1062
Cfr10I	RCCGGY	3 cut(s)	128, 523, 884
Cfr13I	GGNCC	4 cut(s)	296, 526, 693, 754
CseI	GACGC	2 cut(s)	1051, 1154
Csp6I	GTAC	4 cut(s)	308, 675, 734, 1001
CspAI	ACCGGT	2 cut(s)	128, 523
CviAII	CATG	7 cut(s)	404, 433, 578, 746, 810, 895, 904
CviQI	GTAC	4 cut(s)	308, 675, 734, 1001
DdeI	CTNAG	4 cut(s)	490, 556, 772, 958
EaeI	YGGCCR	1 cut(s)	882
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
EciI	GGCGGA	1 cut(s)	1176
Eco105I	TACGTA	1 cut(s)	1213
Eco130I	CCWWGG	4 cut(s)	177, 577, 750, 1196
Eco24I	GRGCYC	1 cut(s)	817
Eco47I	GGWCC	3 cut(s)	296, 526, 754
Eco57I	CTGAAG	2 cut(s)	652, 842
Eco88I	CYCGRG	2 cut(s)	326, 584
EcoNI	CCTNNNNNAGG	1 cut(s)	920
EcoO109I	RGGNCCY	2 cut(s)	693, 754
EcoRII	CCWGG	3 cut(s)	158, 699, 836
EcoT14I	CCWWGG	4 cut(s)	177, 577, 750, 1196
EcoT38I	GRGCYC	1 cut(s)	817
ErhI	CCWWGG	4 cut(s)	177, 577, 750, 1196
Esp3I	CGTCTC	1 cut(s)	1137
FaeI	CATG	7 cut(s)	407, 436, 581, 749, 813, 898, 907
FalI	AAGNNNNNCTT	2 cut(s)	720, 752
FaqI	GGGAC	1 cut(s)	988
FatI	CATG	7 cut(s)	403, 432, 577, 745, 809, 894, 903
FbaI	TGATCA	1 cut(s)	1074
FblI	GTMKAC	1 cut(s)	1215
Fnu4HI	GCNGC	4 cut(s)	119, 135, 785, 1106
FokI	GGATG	8 cut(s)	32, 400, 696, 964, 1110, 1114, 1134, 1213
FriOI	GRGCYC	1 cut(s)	817
Fsp4HI	GCNGC	4 cut(s)	119, 135, 785, 1106
FspBI	CTAG	4 cut(s)	917, 1181, 1197, 1243
GlaI	GCGC	2 cut(s)	69, 1061
GluI	GCNGC	4 cut(s)	119, 135, 785, 1106
GsuI	CTGGAG	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	3 cut(s)	576, 695, 884
HapII	CCGG	7 cut(s)	48, 129, 313, 524, 683, 713, 885
HgaI	GACGC	2 cut(s)	1051, 1154
HhaI	GCGC	2 cut(s)	70, 1062
Hin1I	GRCGYC	1 cut(s)	1146
Hin1II	CATG	7 cut(s)	407, 436, 581, 749, 813, 898, 907
Hin6I	GCGC	2 cut(s)	68, 1060
HinP1I	GCGC	2 cut(s)	68, 1060
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	4 cut(s)	142, 513, 582, 742
HpaII	CCGG	7 cut(s)	48, 129, 313, 524, 683, 713, 885
HphI	GGTGA	4 cut(s)	37, 262, 296, 634
Hpy166II	GTNNAC	4 cut(s)	310, 430, 487, 1216
Hpy188I	TCNGA	4 cut(s)	112, 520, 775, 793
Hpy188III	TCNNGA	7 cut(s)	170, 257, 586, 713, 1095, 1119, 1138
Hpy8I	GTNNAC	4 cut(s)	310, 430, 487, 1216
Hpy99I	CGWCG	1 cut(s)	1067
HpyAV	CCTTC	5 cut(s)	107, 401, 615, 706, 1047
HpyCH4III	ACNGT	5 cut(s)	13, 448, 603, 880, 1226
HpyCH4IV	ACGT	3 cut(s)	594, 843, 1212
HpyCH4V	TGCA	8 cut(s)	134, 290, 598, 784, 898, 950, 1009, 1105
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 131, 164, 173, 692, 701, 890
HpyF3I	CTNAG	4 cut(s)	490, 556, 772, 958
HpySE526I	ACGT	3 cut(s)	594, 843, 1212
Hsp92I	GRCGYC	1 cut(s)	1146
Hsp92II	CATG	7 cut(s)	407, 436, 581, 749, 813, 898, 907
HspAI	GCGC	2 cut(s)	68, 1060
Kpn2I	TCCGGA	1 cut(s)	712
KroI	GCCGGC	1 cut(s)	884
KroNI	GCCGGC	1 cut(s)	886
Ksp22I	TGATCA	1 cut(s)	1074
LmnI	GCTCC	2 cut(s)	820, 1189
Lsp1109I	GCAGC	4 cut(s)	105, 146, 796, 1117
LweI	GCATC	5 cut(s)	163, 277, 880, 937, 1092
MaeI	CTAG	4 cut(s)	917, 1181, 1197, 1243
MaeII	ACGT	3 cut(s)	594, 843, 1212
MaeIII	GTNAC	3 cut(s)	229, 476, 498
MboII	GAAGA	6 cut(s)	363, 601, 658, 728, 956, 1058
MflI	RGATCY	3 cut(s)	378, 654, 793
MhlI	GDGCHC	2 cut(s)	8, 817
MluCI	AATT	2 cut(s)	344, 1133
MlyI	GAGTC	3 cut(s)	136, 507, 576
MmeI	TCCRAC	2 cut(s)	81, 274
MnlI	CCTC	9 cut(s)	10, 29, 32, 220, 223, 322, 579, 650, 767
MroI	TCCGGA	1 cut(s)	712
MroNI	GCCGGC	1 cut(s)	884
MseI	TTAA	3 cut(s)	453, 806, 860
MslI	CAYNNNNRTG	3 cut(s)	11, 808, 878
MspA1I	CMGCKG	2 cut(s)	545, 820
MspCI	CTTAAG	1 cut(s)	859
MspI	CCGG	7 cut(s)	48, 129, 313, 524, 683, 713, 885
MspR9I	CCNGG	4 cut(s)	49, 160, 701, 838
Mva1269I	GAATGC	1 cut(s)	787
MvaI	CCWGG	3 cut(s)	160, 701, 838
MvnI	CGCG	1 cut(s)	1062
MwoI	GCNNNNNNNGC	7 cut(s)	53, 131, 164, 173, 692, 701, 890
NaeI	GCCGGC	1 cut(s)	886
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	577
NgoMIV	GCCGGC	1 cut(s)	884
NlaIII	CATG	7 cut(s)	407, 436, 581, 749, 813, 898, 907
NlaIV	GGNNCC	2 cut(s)	694, 816
NmuCI	GTSAC	3 cut(s)	229, 476, 498
OliI	CACNNNNGTG	1 cut(s)	11
PaeR7I	CTCGAG	2 cut(s)	326, 584
PcsI	WCGNNNNNNNCGW	1 cut(s)	591
PctI	GAATGC	1 cut(s)	787
PdiI	GCCGGC	1 cut(s)	886
PfeI	GAWTC	1 cut(s)	742
PinAI	ACCGGT	2 cut(s)	128, 523
PkrI	GCNGC	4 cut(s)	120, 136, 786, 1107
PleI	GAGTC	3 cut(s)	136, 507, 576
PpsI	GAGTC	3 cut(s)	136, 507, 576
Ppu21I	YACGTR	1 cut(s)	1213
PpuMI	RGGWCCY	1 cut(s)	754
Psp5II	RGGWCCY	1 cut(s)	754
Psp6I	CCWGG	3 cut(s)	158, 699, 836
PspGI	CCWGG	3 cut(s)	158, 699, 836
PspN4I	GGNNCC	2 cut(s)	694, 816
PspPI	GGNCC	4 cut(s)	296, 526, 693, 754
PspPPI	RGGWCCY	1 cut(s)	754
PspXI	VCTCGAGB	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	1118
PsuI	RGATCY	3 cut(s)	378, 654, 793
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	4 cut(s)	309, 676, 735, 1002
RsaNI	GTAC	4 cut(s)	308, 675, 734, 1001
RseI	CAYNNNNRTG	3 cut(s)	11, 808, 878
SaqAI	TTAA	3 cut(s)	453, 806, 860
SatI	GCNGC	4 cut(s)	119, 135, 785, 1106
Sau96I	GGNCC	4 cut(s)	296, 526, 693, 754
ScaI	AGTACT	2 cut(s)	735, 1002
SchI	GAGTC	3 cut(s)	136, 507, 576
ScrFI	CCNGG	4 cut(s)	49, 160, 701, 838
SduI	GDGCHC	2 cut(s)	8, 817
SfaNI	GCATC	5 cut(s)	163, 277, 880, 937, 1092
Sfr274I	CTCGAG	2 cut(s)	326, 584
SgrAI	CRCCGGYG	1 cut(s)	128
SinI	GGWCC	3 cut(s)	296, 526, 754
SlaI	CTCGAG	2 cut(s)	326, 584
SmiMI	CAYNNNNRTG	3 cut(s)	11, 808, 878
SmlI	CTYRAG	7 cut(s)	218, 326, 570, 584, 737, 859, 1138
SmoI	CTYRAG	7 cut(s)	218, 326, 570, 584, 737, 859, 1138
SnaBI	TACGTA	1 cut(s)	1213
Sse9I	AATT	2 cut(s)	344, 1133
SsiI	CCGC	4 cut(s)	62, 384, 818, 1187
SspMI	CTAG	4 cut(s)	917, 1181, 1197, 1243
StyD4I	CCNGG	4 cut(s)	47, 158, 699, 836
StyI	CCWWGG	4 cut(s)	177, 577, 750, 1196
TaaI	ACNGT	5 cut(s)	13, 448, 603, 880, 1226
TaiI	ACGT	3 cut(s)	597, 846, 1215
TaqI	TCGA	6 cut(s)	327, 390, 538, 585, 800, 1236
TaqII	GACCGA	1 cut(s)	313
TasI	AATT	2 cut(s)	344, 1133
TatI	WGTACW	4 cut(s)	307, 674, 733, 1000
TfiI	GAWTC	1 cut(s)	742
Tru1I	TTAA	3 cut(s)	453, 806, 860
Tru9I	TTAA	3 cut(s)	453, 806, 860
TscAI	CASTG	3 cut(s)	957, 1084, 1231
TseFI	GTSAC	3 cut(s)	229, 476, 498
TseI	GCWGC	4 cut(s)	118, 134, 784, 1105
Tsp45I	GTSAC	3 cut(s)	229, 476, 498
TspDTI	ATGAA	6 cut(s)	192, 344, 357, 402, 420, 1145
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	3 cut(s)	957, 1084, 1231
Vha464I	CTTAAG	1 cut(s)	859
VpaK11BI	GGWCC	3 cut(s)	296, 526, 754
XagI	CCTNNNNNAGG	1 cut(s)	920
XapI	RAATTY	1 cut(s)	1133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XhoI	CTCGAG	2 cut(s)	326, 584
XmaJI	CCTAGG	1 cut(s)	1196
XmiI	GTMKAC	1 cut(s)	1215
XspI	CTAG	4 cut(s)	917, 1181, 1197, 1243
ZrmI	AGTACT	2 cut(s)	735, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.