Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001290

Physical Location & Seq

Genomic Coordinates Forward (+)

10015495 .. 10017275

Gene Structure 1781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031985

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCAATTTGTATATAACTTGTCAGAAAAATATATACAGACACAGGTAGATATTGCGAGTAAGATTGGCCGGAATGGGTACAACGGTGGAGGATGTGGTGATAGTAGGAGGAGGGATAGCCGGACTGGCGACAGCGTTGGCGCTGAAGAGAGCTGGAATAGAAGCGTTGGTGTTGGAGAGTCGGAAGGGCTGCGAGCCACTGGTGCAGCTTTGACTCTATTCCTAAACGCCTGGATTGCTCTTGATACCTTGGGGGTTTCTCATAAGCTTGCTACTTATACCCCATCTCTCAAGCGATATGTAACTGATCTTGATACTGGAGAAGTTCAAGAACTCTCTTTCACCAGAGCCAATGGTGATGCAGCTGGACAGAGATCAGTACACCGGAAAGCCTTGCTCGAGGCTTTGGCAGGTGAATTACCGGTTCATTCGATCCGTTTCTCTTCCAAGATCTCTTCTATTAAAACCCAACAACATGAAGGTTCATCCATTGCCATTGTTCACGCGGAAAATGGAACTGTCATTAAAGCAAAGGTTCTCATAGGGTGTGACGGGGTTCACTCAGTGATGTCACGCTGGTTAGGACTCCGTGAGCCAGTCCTTTCAGGTCGATCAGCTGCTCGTGGCTTGGCTGTGTATCCTCAAGGCCATGGACTCGAGCAGAAGGTGCGACAGTATGTAGGATCAGGCAGAAGGGCTGGCTTCGTTCCCCTCACCGACAAAGAGATCTACTGGTTCTTCACTGTCACATCTCCAGCTAAAGGGACCTCCCTAGCGAAAGATCCCGAACATATACAAAAAGAAGTACTTGAGACTTATGCCAAGGACCTCCCACCTATATTCTTAGATGTTGTGCAGCACACAGATCTTTCTACATTAACATGGGCTCCATTGATCTTTCTACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

303

Amino Acids

32.92

Weight (kDa)

8.76

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	99 - 280	2.8e-07	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001290)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23740 FvH4_1g23750 FvH4_1g23770
malus_domestica	MD11G1231700.v1.1 MD11G1231900.v1.1
prunus_persica	Prupe.6G162100_v2.0.a1
pyrus_communis	pycom11g20520
rosa_chinensis	RchiOBHm_Chr2g0119591 RchiOBHm_Chr2g0119621 RchiOBHm_Chr2g0119641 RchiOBHm_Chr5g0013091
rosa_laevigata	RLG00000018140 RLG00000018142 RLG00000018474 RLG00000018477 RLG00000018479 RLG00000018481 RLG00000018482 RLG00000031985
rosa_multiflora	Rmu_sc0000825.1_g000006 Rmu_sc0000825.1_g000015 Rmu_sc0003158.1_g000005 Rmu_sc0003892.1_g000012 Rmu_sc0027906.1_g000001 Rmu_sc0040685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063490 Rroxscaffold_2G00124140 Rroxscaffold_2G00124230 Rroxscaffold_2G00124240 Rroxscaffold_2G00124250
rosa_rugosa	Rorug02G0222300 Rorug02G0222400 Rorug02G0222400 Rorug02G0222400 Rorug02G0222500.1 Rorug02G0223100 Rorug05G0007200
rosa_samantha	Rh2AG279800 Rh2AG280300 Rh2BG291500 Rh2BG291900 Rh2DG286500 Rh2DG286900 Rh2DG287300 Rh2DG305700 Rh2DG305900 Rh2DG306000 Rh5AG101300 Rh5BG097800 Rh5CG109900 Rh5DG096900
rosa_wichuraiana	Rw2G022360 Rw2G022400 Rw2G022410 Rw5G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	401
Acc36I	ACCTGC	1 cut(s)	401
AccII	CGCG	1 cut(s)	506
AciI	CCGC	1 cut(s)	506
AclWI	GGATC	3 cut(s)	427, 691, 776
AcoI	YGGCCR	1 cut(s)	67
AcuI	CTGAAG	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	565
AfaI	GTAC	3 cut(s)	80, 381, 807
AfiI	CCNNNNNNNGG	1 cut(s)	761
AgeI	ACCGGT	1 cut(s)	421
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	6 cut(s)	153, 209, 268, 365, 617, 758
AluI	AGCT	6 cut(s)	153, 209, 268, 365, 617, 758
Alw26I	GTCTC	1 cut(s)	806
AlwI	GGATC	3 cut(s)	427, 691, 776
Ama87I	CYCGRG	2 cut(s)	398, 656
AoxI	GGCC	2 cut(s)	67, 646
ApeKI	GCWGC	5 cut(s)	190, 206, 362, 617, 856
AsiGI	ACCGGT	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	2 cut(s)	765, 826
AsuHPI	GGTGA	5 cut(s)	110, 334, 368, 425, 706
AvaI	CYCGRG	2 cut(s)	398, 656
AvaII	GGWCC	2 cut(s)	765, 826
BaeI	ACNNNNGTAYC	2 cut(s)	70, 103
BanII	GRGCYC	1 cut(s)	889
BauI	CACGAG	1 cut(s)	621
BbvI	GCAGC	5 cut(s)	177, 218, 374, 604, 868
BccI	CCATC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	232
BciVI	GTATCC	1 cut(s)	648
BcoDI	GTCTC	1 cut(s)	806
BfaI	CTAG	1 cut(s)	773
BfoI	RGCGCY	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	401
BfuI	GTATCC	1 cut(s)	648
BglI	GCCNNNNNGGC	1 cut(s)	126
BglII	AGATCT	3 cut(s)	450, 726, 865
BisI	GCNGC	5 cut(s)	191, 207, 363, 618, 857
BlsI	GCNGC	5 cut(s)	192, 208, 364, 619, 858
BmcAI	AGTACT	1 cut(s)	807
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	2 cut(s)	765, 826
BmeT110I	CYCGRG	2 cut(s)	398, 656
BmgT120I	GGNCC	2 cut(s)	765, 826
BmiI	GGNNCC	2 cut(s)	766, 888
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	349
BpmI	CTGGAG	2 cut(s)	339, 738
BpuEI	CTTGAG	3 cut(s)	275, 627, 830
BsaJI	CCNNGG	3 cut(s)	249, 649, 822
BsaWI	WCCGGW	2 cut(s)	384, 421
BsaXI	ACNNNNNCTCC	2 cut(s)	871, 901
Bsc4I	CCNNNNNNNGG	1 cut(s)	761
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	5 cut(s)	130, 205, 322, 596, 737
Bse3DI	GCAATG	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	3 cut(s)	249, 649, 822
BseGI	GGATG	2 cut(s)	98, 485
BseLI	CCNNNNNNNGG	1 cut(s)	761
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	5 cut(s)	130, 205, 322, 596, 737
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	5 cut(s)	177, 218, 374, 604, 868
BsgI	GTGCAG	2 cut(s)	225, 875
Bsh1236I	CGCG	1 cut(s)	506
BshFI	GGCC	2 cut(s)	69, 648
BshTI	ACCGGT	1 cut(s)	421
BsiHKCI	CYCGRG	2 cut(s)	398, 656
BsiSI	CCGG	4 cut(s)	70, 121, 385, 422
BslFI	GGGAC	1 cut(s)	778
BslI	CCNNNNNNNGG	1 cut(s)	761
BsmAI	GTCTC	1 cut(s)	806
BsmFI	GGGAC	1 cut(s)	778
BsnI	GGCC	2 cut(s)	69, 648
BsoBI	CYCGRG	2 cut(s)	398, 656
Bsp1286I	GDGCHC	1 cut(s)	889
Bsp19I	CCATGG	1 cut(s)	649
BspACI	CCGC	1 cut(s)	506
BspANI	GGCC	2 cut(s)	69, 648
BspCNI	CTCAG	1 cut(s)	575
BspFNI	CGCG	1 cut(s)	506
BspLI	GGNNCC	2 cut(s)	766, 888
BspMI	ACCTGC	1 cut(s)	401
BspPI	GGATC	3 cut(s)	427, 691, 776
BsrDI	GCAATG	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	5 cut(s)	130, 205, 322, 596, 737
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	3 cut(s)	249, 649, 822
BssSI	CACGAG	1 cut(s)	621
BssT1I	CCWWGG	3 cut(s)	249, 649, 822
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	4 cut(s)	86, 520, 675, 745
Bst6I	CTCTTC	3 cut(s)	141, 448, 460
BstAPI	GCANNNNNTGC	1 cut(s)	667
BstC8I	GCNNGC	3 cut(s)	195, 270, 700
BstDEI	CTNAG	2 cut(s)	562, 844
BstDSI	CCRYGG	1 cut(s)	649
BstF5I	GGATG	2 cut(s)	98, 485
BstFNI	CGCG	1 cut(s)	506
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstMAI	GTCTC	1 cut(s)	806
BstMWI	GCNNNNNNNGC	4 cut(s)	126, 203, 236, 667
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	5 cut(s)	177, 218, 374, 604, 868
BstX2I	RGATCY	4 cut(s)	450, 726, 781, 865
BstYI	RGATCY	4 cut(s)	450, 726, 781, 865
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	2 cut(s)	69, 648
BtgI	CCRYGG	1 cut(s)	649
BtsCI	GGATG	2 cut(s)	98, 485
BtsIMutI	CAGTG	3 cut(s)	198, 570, 741
BveI	ACCTGC	1 cut(s)	401
Cac8I	GCNNGC	3 cut(s)	195, 270, 700
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	765, 826
Csp6I	GTAC	3 cut(s)	79, 380, 806
CspAI	ACCGGT	1 cut(s)	421
CviAII	CATG	3 cut(s)	476, 650, 882
CviQI	GTAC	3 cut(s)	79, 380, 806
DdeI	CTNAG	2 cut(s)	562, 844
DraIII	CACNNNGTG	1 cut(s)	565
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	3 cut(s)	141, 448, 460
EarI	CTCTTC	3 cut(s)	141, 448, 460
Eco130I	CCWWGG	3 cut(s)	249, 649, 822
Eco24I	GRGCYC	1 cut(s)	889
Eco47I	GGWCC	2 cut(s)	765, 826
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	2 cut(s)	398, 656
EcoO109I	RGGNCCY	2 cut(s)	765, 826
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	3 cut(s)	249, 649, 822
EcoT38I	GRGCYC	1 cut(s)	889
ErhI	CCWWGG	3 cut(s)	249, 649, 822
FaeI	CATG	3 cut(s)	479, 653, 885
FalI	AAGNNNNNCTT	2 cut(s)	792, 824
FaqI	GGGAC	1 cut(s)	778
FatI	CATG	3 cut(s)	475, 649, 881
Fnu4HI	GCNGC	5 cut(s)	191, 207, 363, 618, 857
FokI	GGATG	2 cut(s)	105, 472
FriOI	GRGCYC	1 cut(s)	889
Fsp4HI	GCNGC	5 cut(s)	191, 207, 363, 618, 857
FspBI	CTAG	1 cut(s)	773
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	5 cut(s)	191, 207, 363, 618, 857
GsuI	CTGGAG	2 cut(s)	339, 738
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	69, 648
HapII	CCGG	4 cut(s)	70, 121, 385, 422
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	479, 653, 885
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	4 cut(s)	179, 214, 585, 654
HpaII	CCGG	4 cut(s)	70, 121, 385, 422
HphI	GGTGA	5 cut(s)	110, 334, 368, 425, 706
Hpy166II	GTNNAC	3 cut(s)	382, 502, 559
Hpy188I	TCNGA	2 cut(s)	25, 184
Hpy188III	TCNNGA	4 cut(s)	242, 311, 329, 785
Hpy8I	GTNNAC	3 cut(s)	382, 502, 559
HpyAV	CCTTC	4 cut(s)	179, 473, 658, 687
HpyCH4III	ACNGT	4 cut(s)	86, 520, 675, 745
HpyCH4V	TGCA	4 cut(s)	4, 206, 362, 856
HpyF10VI	GCNNNNNNNGC	4 cut(s)	126, 203, 236, 667
HpyF3I	CTNAG	2 cut(s)	562, 844
Hsp92II	CATG	3 cut(s)	479, 653, 885
HspAI	GCGC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	892
Lsp1109I	GCAGC	5 cut(s)	177, 218, 374, 604, 868
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	773
MaeIII	GTNAC	4 cut(s)	301, 548, 570, 745
MboII	GAAGA	4 cut(s)	158, 435, 447, 730
MflI	RGATCY	4 cut(s)	450, 726, 781, 865
MhlI	GDGCHC	1 cut(s)	889
MluCI	AATT	2 cut(s)	5, 416
MlyI	GAGTC	4 cut(s)	188, 208, 579, 648
MmeI	TCCRAC	2 cut(s)	154, 162
MnlI	CCTC	8 cut(s)	83, 102, 105, 394, 651, 722, 778, 839
MseI	TTAA	4 cut(s)	462, 525, 878, 907
MslI	CAYNNNNRTG	1 cut(s)	880
MspA1I	CMGCKG	2 cut(s)	365, 617
MspI	CCGG	4 cut(s)	70, 121, 385, 422
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	4 cut(s)	126, 203, 236, 667
NcoI	CCATGG	1 cut(s)	649
NlaIII	CATG	3 cut(s)	479, 653, 885
NlaIV	GGNNCC	2 cut(s)	766, 888
NmuCI	GTSAC	3 cut(s)	548, 570, 745
PaeR7I	CTCGAG	2 cut(s)	398, 656
PaqCI	CACCTGC	1 cut(s)	401
PinAI	ACCGGT	1 cut(s)	421
PkrI	GCNGC	5 cut(s)	192, 208, 364, 619, 858
PleI	GAGTC	4 cut(s)	187, 208, 579, 648
PpsI	GAGTC	4 cut(s)	187, 208, 579, 648
PpuMI	RGGWCCY	2 cut(s)	765, 826
Psp5II	RGGWCCY	2 cut(s)	765, 826
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	766, 888
PspPI	GGNCC	2 cut(s)	765, 826
PspPPI	RGGWCCY	2 cut(s)	765, 826
PspXI	VCTCGAGB	2 cut(s)	398, 656
PsuI	RGATCY	4 cut(s)	450, 726, 781, 865
PvuII	CAGCTG	2 cut(s)	365, 617
RsaI	GTAC	3 cut(s)	80, 381, 807
RsaNI	GTAC	3 cut(s)	79, 380, 806
RseI	CAYNNNNRTG	1 cut(s)	880
SaqAI	TTAA	4 cut(s)	462, 525, 878, 907
SatI	GCNGC	5 cut(s)	191, 207, 363, 618, 857
Sau96I	GGNCC	2 cut(s)	765, 826
ScaI	AGTACT	1 cut(s)	807
SchI	GAGTC	4 cut(s)	188, 208, 579, 648
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	889
SfaNI	GCATC	1 cut(s)	349
Sfr274I	CTCGAG	2 cut(s)	398, 656
SinI	GGWCC	2 cut(s)	765, 826
SlaI	CTCGAG	2 cut(s)	398, 656
SmiMI	CAYNNNNRTG	1 cut(s)	880
SmlI	CTYRAG	5 cut(s)	290, 398, 642, 656, 809
SmoI	CTYRAG	5 cut(s)	290, 398, 642, 656, 809
Sse9I	AATT	2 cut(s)	5, 416
SsiI	CCGC	1 cut(s)	506
SspMI	CTAG	1 cut(s)	773
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	3 cut(s)	249, 649, 822
TaaI	ACNGT	4 cut(s)	86, 520, 675, 745
TaqI	TCGA	4 cut(s)	399, 431, 610, 657
TasI	AATT	2 cut(s)	5, 416
TatI	WGTACW	2 cut(s)	379, 805
Tru1I	TTAA	4 cut(s)	462, 525, 878, 907
Tru9I	TTAA	4 cut(s)	462, 525, 878, 907
TscAI	CASTG	3 cut(s)	205, 570, 748
TseFI	GTSAC	3 cut(s)	548, 570, 745
TseI	GCWGC	5 cut(s)	190, 206, 362, 617, 856
Tsp45I	GTSAC	3 cut(s)	548, 570, 745
TspDTI	ATGAA	3 cut(s)	416, 474, 492
TspGWI	ACGGA	2 cut(s)	425, 578
TspRI	CASTG	3 cut(s)	205, 570, 748
VpaK11BI	GGWCC	2 cut(s)	765, 826
XhoI	CTCGAG	2 cut(s)	398, 656
XspI	CTAG	1 cut(s)	773
ZrmI	AGTACT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.