Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001290

Physical Location & Seq

Genomic Coordinates Reverse (-)

21536016 .. 21536796

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0222300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGACACCTCTGCAGACGGATTTGGGAAACTCATGGCCGTCCGTGTTAACACAAAACAACAATATGCAGTTCTGGGAGCATGAGTATGAAGAGCATGGCGCATGTGCAGTAGAGTCAGGTGTACCACCTTTCACTCAAAGGTCCTACTTTGAGAAAGGACACCAGCTATGGCACCAATATGACATCCTTGCAGTGCTTGATCAAAGTGGTATTAAACCGGGTACTGCAACATCATACACTATGACTCAGCTTGTAACCGCAATCCAAAAGAAAATCGGGAGTAACAATACTCCTTTAATCATGTGCAGGAGGACAGCCCTTGGTGACACACTAAGGGAAGTGATAATCTGTCTGGATCACCAGGCAACAAATGTGATAAGTTGCGCGCTCAGTAATAGAAAAACAGATTGCCGGGCTTCGGGCAAGGTATACTATGTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

147

Amino Acids

16.47

Weight (kDa)

6.49

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	3 - 128	3.9e-28	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001290)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23740 FvH4_1g23750 FvH4_1g23770
malus_domestica	MD11G1231700.v1.1 MD11G1231900.v1.1
prunus_persica	Prupe.6G162100_v2.0.a1
pyrus_communis	pycom11g20520
rosa_chinensis	RchiOBHm_Chr2g0119591 RchiOBHm_Chr2g0119621 RchiOBHm_Chr2g0119641 RchiOBHm_Chr5g0013091
rosa_laevigata	RLG00000018140 RLG00000018142 RLG00000018474 RLG00000018477 RLG00000018479 RLG00000018481 RLG00000018482 RLG00000031985
rosa_multiflora	Rmu_sc0000825.1_g000006 Rmu_sc0000825.1_g000015 Rmu_sc0003158.1_g000005 Rmu_sc0003892.1_g000012 Rmu_sc0027906.1_g000001 Rmu_sc0040685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063490 Rroxscaffold_2G00124140 Rroxscaffold_2G00124230 Rroxscaffold_2G00124240 Rroxscaffold_2G00124250
rosa_rugosa	Rorug02G0222300 Rorug02G0222400 Rorug02G0222400 Rorug02G0222400 Rorug02G0222500.1 Rorug02G0223100 Rorug05G0007200
rosa_samantha	Rh2AG279800 Rh2AG280300 Rh2BG291500 Rh2BG291900 Rh2DG286500 Rh2DG286900 Rh2DG287300 Rh2DG305700 Rh2DG305900 Rh2DG306000 Rh5AG101300 Rh5BG097800 Rh5CG109900 Rh5DG096900
rosa_wichuraiana	Rw2G022360 Rw2G022400 Rw2G022410 Rw5G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	171
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	1 cut(s)	386
AciI	CCGC	1 cut(s)	258
AclWI	GGATC	1 cut(s)	363
AcoI	YGGCCR	1 cut(s)	35
AfaI	GTAC	2 cut(s)	123, 223
AfiI	CCNNNNNNNGG	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	3 cut(s)	166, 250, 440
AluI	AGCT	3 cut(s)	166, 250, 440
AlwI	GGATC	1 cut(s)	363
AoxI	GGCC	1 cut(s)	35
AspLEI	GCGC	3 cut(s)	101, 386, 388
AspS9I	GGNCC	1 cut(s)	141
AsuC2I	CCSGG	2 cut(s)	219, 413
AsuHPI	GGTGA	2 cut(s)	335, 350
AvaII	GGWCC	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	171
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	362
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	219, 413
BfmI	CTRYAG	1 cut(s)	11
Bme1390I	CCNGG	3 cut(s)	219, 362, 413
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	3 cut(s)	219, 362, 413
BpuMI	CCSGG	2 cut(s)	219, 413
BsaJI	CCNNGG	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMII	CTCAG	2 cut(s)	260, 403
BsePI	GCGCGC	1 cut(s)	384
BsgI	GTGCAG	2 cut(s)	126, 325
Bsh1236I	CGCG	1 cut(s)	386
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	218, 412
BslI	CCNNNNNNNGG	1 cut(s)	418
BsnI	GGCC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	199, 355
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	2 cut(s)	259, 402
BspFNI	CGCG	1 cut(s)	386
BspLI	GGNNCC	1 cut(s)	173
BspMAI	CTGCAG	1 cut(s)	15
BspPI	GGATC	1 cut(s)	363
BspQI	GCTCTTC	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	319
BssHII	GCGCGC	1 cut(s)	384
BssMI	GATC	2 cut(s)	199, 355
BssNAI	GTATAC	1 cut(s)	430
BssT1I	CCWWGG	1 cut(s)	319
Bst1107I	GTATAC	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	4 cut(s)	246, 332, 389, 441
BstF5I	GGATG	1 cut(s)	183
BstFNI	CGCG	1 cut(s)	386
BstHHI	GCGC	3 cut(s)	101, 386, 388
BstKTI	GATC	2 cut(s)	202, 358
BstMBI	GATC	2 cut(s)	199, 355
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	105
BstSCI	CCNGG	3 cut(s)	217, 360, 411
BstSFI	CTRYAG	1 cut(s)	11
BstUI	CGCG	1 cut(s)	386
BstZ17I	GTATAC	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	386
CfoI	GCGC	3 cut(s)	101, 386, 388
Cfr13I	GGNCC	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	122, 222
CviAII	CATG	5 cut(s)	33, 80, 95, 102, 301
CviJI	RGCY	6 cut(s)	37, 166, 250, 317, 416, 440
CviKI_1	RGCY	6 cut(s)	37, 166, 250, 317, 416, 440
CviQI	GTAC	2 cut(s)	122, 222
DdeI	CTNAG	4 cut(s)	246, 332, 389, 441
DpnI	GATC	2 cut(s)	201, 357
DpnII	GATC	2 cut(s)	199, 355
EaeI	YGGCCR	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	5 cut(s)	36, 83, 98, 105, 304
FatI	CATG	5 cut(s)	32, 79, 94, 101, 300
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	429
FokI	GGATG	1 cut(s)	170
GlaI	GCGC	3 cut(s)	100, 385, 387
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	2 cut(s)	218, 412
HhaI	GCGC	3 cut(s)	101, 386, 388
Hin1II	CATG	5 cut(s)	36, 83, 98, 105, 304
Hin6I	GCGC	3 cut(s)	99, 384, 386
HinP1I	GCGC	3 cut(s)	99, 384, 386
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	2 cut(s)	113, 244
HpaI	GTTAAC	1 cut(s)	48
HpaII	CCGG	2 cut(s)	218, 412
HphI	GGTGA	2 cut(s)	335, 350
Hpy166II	GTNNAC	3 cut(s)	48, 122, 430
Hpy188III	TCNNGA	2 cut(s)	277, 353
Hpy8I	GTNNAC	3 cut(s)	48, 122, 430
HpyCH4V	TGCA	6 cut(s)	13, 67, 107, 191, 227, 306
HpyF3I	CTNAG	4 cut(s)	246, 332, 389, 441
Hsp92II	CATG	5 cut(s)	36, 83, 98, 105, 304
HspAI	GCGC	3 cut(s)	99, 384, 386
Ksp22I	TGATCA	1 cut(s)	199
KspAI	GTTAAC	1 cut(s)	48
Kzo9I	GATC	2 cut(s)	199, 355
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	9 cut(s)	58, 102, 176, 231, 292, 338, 347, 374, 425
MaeIII	GTNAC	3 cut(s)	253, 281, 323
MalI	GATC	2 cut(s)	201, 357
MboI	GATC	2 cut(s)	199, 355
MboII	GAAGA	1 cut(s)	101
MlyI	GAGTC	2 cut(s)	122, 238
MnlI	CCTC	2 cut(s)	18, 303
MseI	TTAA	3 cut(s)	47, 213, 296
MslI	CAYNNNNRTG	2 cut(s)	84, 177
MspI	CCGG	2 cut(s)	218, 412
MspR9I	CCNGG	3 cut(s)	219, 362, 413
MvaI	CCWGG	1 cut(s)	362
MvnI	CGCG	1 cut(s)	386
NciI	CCSGG	2 cut(s)	219, 413
NdeII	GATC	2 cut(s)	199, 355
NlaIII	CATG	5 cut(s)	36, 83, 98, 105, 304
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	323
NspI	RCATGY	1 cut(s)	105
PauI	GCGCGC	1 cut(s)	384
PciSI	GCTCTTC	1 cut(s)	84
PleI	GAGTC	2 cut(s)	121, 238
PpsI	GAGTC	2 cut(s)	121, 238
PpuMI	RGGWCCY	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	141
PspPPI	RGGWCCY	1 cut(s)	141
PstI	CTGCAG	1 cut(s)	15
PteI	GCGCGC	1 cut(s)	384
RsaI	GTAC	2 cut(s)	123, 223
RsaNI	GTAC	2 cut(s)	122, 222
RseI	CAYNNNNRTG	2 cut(s)	84, 177
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	3 cut(s)	47, 213, 296
Sau3AI	GATC	2 cut(s)	199, 355
Sau96I	GGNCC	1 cut(s)	141
SchI	GAGTC	2 cut(s)	122, 238
ScrFI	CCNGG	3 cut(s)	219, 362, 413
SetI	ASST	8 cut(s)	10, 121, 130, 143, 168, 252, 429, 442
SfcI	CTRYAG	1 cut(s)	11
SinI	GGWCC	1 cut(s)	141
SmiMI	CAYNNNNRTG	2 cut(s)	84, 177
SsiI	CCGC	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	217, 360, 411
StyI	CCWWGG	1 cut(s)	319
Tru1I	TTAA	3 cut(s)	47, 213, 296
Tru9I	TTAA	3 cut(s)	47, 213, 296
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	102
TspGWI	ACGGA	2 cut(s)	31, 32
TspRI	CASTG	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	141
XceI	RCATGY	1 cut(s)	105
XmiI	GTMKAC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.