Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040685.1

Orthogroup ID

OG0001290

Physical Location & Seq

Genomic Coordinates Forward (+)

1007 .. 1767

Gene Structure 761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040685.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggatgttgacacaggagaagttcaagaagtttctagagccataaccaatgaggttccagttggaccgagatgtttacaccggaaagccttactcgaggccttggcagatgaattaccaattcattcagtccgtttctcttccaagatcactgctattgatacccaacaacatgaaggttcatcccttgccattgttttcatggaaaatggaactattatcaaagcaaaggttctgatagggtgtgacggtgtgcactcggtggtgtcacgctggttagggctcggtgaaccagtcctttcgggtcgatcagcggttcgtggattggctgtgtttcctcaagaccatggactcggccaaaactttcgacagtacgtaggaacaggcataagggctggttttattcccgtttctgacaaagacgtatattggttcttcagttgcatatctccagctaaaggtacgtttggaatcttgcatacctttggaatacatggtagcagaaacaaagccttctcgacccactgccatttgcttttcaacagaatctatatacttcaaacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

188

Amino Acids

20.57

Weight (kDa)

8.41

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001290)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23740 FvH4_1g23750 FvH4_1g23770
malus_domestica	MD11G1231700.v1.1 MD11G1231900.v1.1
prunus_persica	Prupe.6G162100_v2.0.a1
pyrus_communis	pycom11g20520
rosa_chinensis	RchiOBHm_Chr2g0119591 RchiOBHm_Chr2g0119621 RchiOBHm_Chr2g0119641 RchiOBHm_Chr5g0013091
rosa_laevigata	RLG00000018140 RLG00000018142 RLG00000018474 RLG00000018477 RLG00000018479 RLG00000018481 RLG00000018482 RLG00000031985
rosa_multiflora	Rmu_sc0000825.1_g000006 Rmu_sc0000825.1_g000015 Rmu_sc0003158.1_g000005 Rmu_sc0003892.1_g000012 Rmu_sc0027906.1_g000001 Rmu_sc0040685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063490 Rroxscaffold_2G00124140 Rroxscaffold_2G00124230 Rroxscaffold_2G00124240 Rroxscaffold_2G00124250
rosa_rugosa	Rorug02G0222300 Rorug02G0222400 Rorug02G0222400 Rorug02G0222400 Rorug02G0222500.1 Rorug02G0223100 Rorug05G0007200
rosa_samantha	Rh2AG279800 Rh2AG280300 Rh2BG291500 Rh2BG291900 Rh2DG286500 Rh2DG286900 Rh2DG287300 Rh2DG305700 Rh2DG305900 Rh2DG306000 Rh5AG101300 Rh5BG097800 Rh5CG109900 Rh5DG096900
rosa_wichuraiana	Rw2G022360 Rw2G022400 Rw2G022410 Rw5G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	421
AdeI	CACNNNGTG	1 cut(s)	262
AfaI	GTAC	2 cut(s)	374, 463
AfiI	CCNNNNNNNGG	1 cut(s)	458
AgsI	TTSAA	3 cut(s)	26, 541, 560
AluBI	AGCT	1 cut(s)	455
AluI	AGCT	1 cut(s)	455
Alw21I	GWGCWC	1 cut(s)	258
Alw44I	GTGCAC	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	2 cut(s)	99, 355
ApaLI	GTGCAC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	376
BsaJI	CCNNGG	2 cut(s)	102, 346
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	2 cut(s)	59, 293
BseDI	CCNNGG	2 cut(s)	102, 346
BseGI	GGATG	2 cut(s)	10, 182
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseNI	ACTGG	2 cut(s)	59, 293
BseSI	GKGCMC	1 cut(s)	258
BshFI	GGCC	2 cut(s)	101, 357
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	458
BsnI	GGCC	2 cut(s)	101, 357
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	258, 285
Bsp143I	GATC	2 cut(s)	147, 308
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	2 cut(s)	101, 357
BspLI	GGNNCC	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	59, 293
BssECI	CCNNGG	2 cut(s)	102, 346
BssMI	GATC	2 cut(s)	147, 308
BssT1I	CCWWGG	2 cut(s)	102, 346
Bst4CI	ACNGT	2 cut(s)	251, 372
Bst6I	CTCTTC	1 cut(s)	145
BstBAI	YACGTR	1 cut(s)	376
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	2 cut(s)	10, 182
BstKTI	GATC	2 cut(s)	150, 311
BstMBI	GATC	2 cut(s)	147, 308
BstSLI	GKGCMC	1 cut(s)	258
BstSNI	TACGTA	1 cut(s)	376
BsuRI	GGCC	2 cut(s)	101, 357
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	10, 182
BtsI	GCAGTG	2 cut(s)	150, 523
BtsIMutI	CAGTG	2 cut(s)	150, 523
Cfr13I	GGNCC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	373, 462
CviAII	CATG	4 cut(s)	173, 202, 347, 494
CviJI	RGCY	9 cut(s)	41, 89, 101, 283, 329, 357, 395, 455, 512
CviKI_1	RGCY	9 cut(s)	41, 89, 101, 283, 329, 357, 395, 455, 512
CviQI	GTAC	2 cut(s)	373, 462
DpnI	GATC	2 cut(s)	149, 310
DpnII	GATC	2 cut(s)	147, 308
DraIII	CACNNNGTG	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Eco105I	TACGTA	1 cut(s)	376
Eco130I	CCWWGG	2 cut(s)	102, 346
Eco147I	AGGCCT	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	421
Eco88I	CYCGRG	1 cut(s)	95
EcoT14I	CCWWGG	2 cut(s)	102, 346
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	2 cut(s)	102, 346
FaeI	CATG	4 cut(s)	176, 205, 350, 497
FatI	CATG	4 cut(s)	172, 201, 346, 493
FokI	GGATG	2 cut(s)	17, 169
FriOI	GRGCYC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	36
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	101, 357
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	4 cut(s)	176, 205, 350, 497
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	351, 471, 546
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	4 cut(s)	10, 77, 256, 290
Hpy188I	TCNGA	2 cut(s)	237, 415
Hpy188III	TCNNGA	4 cut(s)	26, 36, 341, 517
Hpy8I	GTNNAC	4 cut(s)	10, 77, 256, 290
HpyAV	CCTTC	2 cut(s)	170, 523
HpyCH4III	ACNGT	2 cut(s)	251, 372
HpyCH4IV	ACGT	4 cut(s)	375, 423, 464, 563
HpyCH4V	TGCA	3 cut(s)	256, 444, 478
HpySE526I	ACGT	4 cut(s)	375, 423, 464, 563
Hsp92II	CATG	4 cut(s)	176, 205, 350, 497
Kzo9I	GATC	2 cut(s)	147, 308
LpnPI	CCDG	7 cut(s)	72, 95, 259, 306, 369, 381, 465
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	4 cut(s)	375, 423, 464, 563
MaeIII	GTNAC	2 cut(s)	245, 267
MalI	GATC	2 cut(s)	149, 310
MboI	GATC	2 cut(s)	147, 308
MboII	GAAGA	2 cut(s)	132, 427
MhlI	GDGCHC	2 cut(s)	258, 285
MluCI	AATT	2 cut(s)	113, 120
MlyI	GAGTC	1 cut(s)	345
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	3 cut(s)	46, 91, 348
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	1 cut(s)	82
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	2 cut(s)	147, 308
NlaIII	CATG	4 cut(s)	176, 205, 350, 497
NlaIV	GGNNCC	1 cut(s)	57
NmeAIII	GCCGAG	1 cut(s)	333
NmuCI	GTSAC	2 cut(s)	245, 267
PaeR7I	CTCGAG	1 cut(s)	95
PceI	AGGCCT	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	471, 546
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
Ppu21I	YACGTR	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	65
PspXI	VCTCGAGB	1 cut(s)	95
RsaI	GTAC	2 cut(s)	374, 463
RsaNI	GTAC	2 cut(s)	373, 462
Sau3AI	GATC	2 cut(s)	147, 308
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	345
SduI	GDGCHC	2 cut(s)	258, 285
Sfr274I	CTCGAG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	95
SmlI	CTYRAG	2 cut(s)	95, 339
SmoI	CTYRAG	2 cut(s)	95, 339
SnaBI	TACGTA	1 cut(s)	376
Sse9I	AATT	2 cut(s)	113, 120
SseBI	AGGCCT	1 cut(s)	101
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	1 cut(s)	36
StuI	AGGCCT	1 cut(s)	101
StyI	CCWWGG	2 cut(s)	102, 346
TaaI	ACNGT	2 cut(s)	251, 372
TaiI	ACGT	4 cut(s)	378, 426, 467, 566
TaqI	TCGA	4 cut(s)	96, 307, 367, 518
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	2 cut(s)	113, 120
TfiI	GAWTC	2 cut(s)	471, 546
TscAI	CASTG	2 cut(s)	157, 530
TseFI	GTSAC	2 cut(s)	245, 267
Tsp45I	GTSAC	2 cut(s)	245, 267
TspDTI	ATGAA	5 cut(s)	113, 126, 171, 189, 190
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	157, 530
VneI	GTGCAC	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	65
XbaI	TCTAGA	1 cut(s)	35
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XhoI	CTCGAG	1 cut(s)	95
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.