Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001290

Physical Location & Seq

Genomic Coordinates Forward (+)

8867881 .. 8868841

Gene Structure 961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29363

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAGTTATTAGCCGTGGGAATATTCAAGAAGTCTTTGAAGCAGAGGAGTTATTTTTCGTGTGATGCAGCTGGACCGAGATCAGTACACCGGAAAGCCTTGCTCGAGGCATTGGCAGGTGAATTACCGGTTCATTTGATCCGTTTCTCTTCCAAGATCTCTTCTATTGAAACACAACAACATGAAGGTTCATCCGTTGCCATTGTTCACGTGGAAAATGGAACTGTCATTAAAGCAAAATTTCTCATAGGGTGTGACGGGGTTCACTTAGTGGTGTCACGCTGGTTAGGACTCCGTGAGCCAGTCCTTTCAGGACGATCAGCTGCTCGTGGCTTGGCTGTGTATCCTCAAGGCCATGGACTCGAGCAGAAGGTGCGACAGTATGTAGGATCAGGCAGAAGGGCTGGCTTCGTTCCCCTCACCGACAAAGAGATCTACTGGTTCTTCACTGTCACATCTCCAGCTAAAGGTTCGAAACCTTCACCTGTGCAACAAAGTATTTGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

169

Amino Acids

18.42

Weight (kDa)

10.02

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001290)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23740 FvH4_1g23750 FvH4_1g23770
malus_domestica	MD11G1231700.v1.1 MD11G1231900.v1.1
prunus_persica	Prupe.6G162100_v2.0.a1
pyrus_communis	pycom11g20520
rosa_chinensis	RchiOBHm_Chr2g0119591 RchiOBHm_Chr2g0119621 RchiOBHm_Chr2g0119641 RchiOBHm_Chr5g0013091
rosa_laevigata	RLG00000018140 RLG00000018142 RLG00000018474 RLG00000018477 RLG00000018479 RLG00000018481 RLG00000018482 RLG00000031985
rosa_multiflora	Rmu_sc0000825.1_g000006 Rmu_sc0000825.1_g000015 Rmu_sc0003158.1_g000005 Rmu_sc0003892.1_g000012 Rmu_sc0027906.1_g000001 Rmu_sc0040685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063490 Rroxscaffold_2G00124140 Rroxscaffold_2G00124230 Rroxscaffold_2G00124240 Rroxscaffold_2G00124250
rosa_rugosa	Rorug02G0222300 Rorug02G0222400 Rorug02G0222400 Rorug02G0222400 Rorug02G0222500.1 Rorug02G0223100 Rorug05G0007200
rosa_samantha	Rh2AG279800 Rh2AG280300 Rh2BG291500 Rh2BG291900 Rh2DG286500 Rh2DG286900 Rh2DG287300 Rh2DG305700 Rh2DG305900 Rh2DG306000 Rh5AG101300 Rh5BG097800 Rh5CG109900 Rh5DG096900
rosa_wichuraiana	Rw2G022360 Rw2G022400 Rw2G022410 Rw5G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	107
AclWI	GGATC	2 cut(s)	133, 397
AcsI	RAATTY	1 cut(s)	239
AcvI	CACGTG	1 cut(s)	211
AdeI	CACNNNGTG	1 cut(s)	271
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgeI	ACCGGT	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	28, 40, 170
AluBI	AGCT	3 cut(s)	71, 323, 464
AluI	AGCT	3 cut(s)	71, 323, 464
AlwI	GGATC	2 cut(s)	133, 397
Ama87I	CYCGRG	2 cut(s)	104, 362
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	2 cut(s)	68, 323
ApoI	RAATTY	1 cut(s)	239
AsiGI	ACCGGT	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	3 cut(s)	131, 412, 474
AsuII	TTCGAA	1 cut(s)	473
AvaI	CYCGRG	2 cut(s)	104, 362
AvaII	GGWCC	1 cut(s)	74
BauI	CACGAG	1 cut(s)	327
BbrPI	CACGTG	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	80, 310
BciVI	GTATCC	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	354
BglII	AGATCT	2 cut(s)	156, 432
BisI	GCNGC	2 cut(s)	69, 324
BlsI	GCNGC	2 cut(s)	70, 325
Bme18I	GGWCC	1 cut(s)	74
BmeT110I	CYCGRG	2 cut(s)	104, 362
BmgT120I	GGNCC	1 cut(s)	74
BmsI	GCATC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	444
Bpu14I	TTCGAA	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	333
BsaAI	YACGTR	1 cut(s)	211
BsaJI	CCNNGG	2 cut(s)	15, 355
BsaWI	WCCGGW	2 cut(s)	90, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	2 cut(s)	302, 443
BseDI	CCNNGG	2 cut(s)	15, 355
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseNI	ACTGG	2 cut(s)	302, 443
BseRI	GAGGAG	1 cut(s)	61
BseXI	GCAGC	2 cut(s)	80, 310
BshFI	GGCC	1 cut(s)	354
BshTI	ACCGGT	1 cut(s)	127
BsiHKCI	CYCGRG	2 cut(s)	104, 362
BsiSI	CCGG	2 cut(s)	91, 128
BslI	CCNNNNNNNGG	1 cut(s)	467
BsnI	GGCC	1 cut(s)	354
BsoBI	CYCGRG	2 cut(s)	104, 362
Bsp119I	TTCGAA	1 cut(s)	473
Bsp143I	GATC	6 cut(s)	80, 138, 156, 317, 389, 432
Bsp19I	CCATGG	1 cut(s)	355
BspANI	GGCC	1 cut(s)	354
BspMI	ACCTGC	1 cut(s)	107
BspPI	GGATC	2 cut(s)	133, 397
BspT104I	TTCGAA	1 cut(s)	473
BsrFI	RCCGGY	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	302, 443
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	15, 355
BssMI	GATC	6 cut(s)	80, 138, 156, 317, 389, 432
BssSI	CACGAG	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	355
Bst2BI	CACGAG	1 cut(s)	327
Bst4CI	ACNGT	3 cut(s)	226, 381, 451
Bst6I	CTCTTC	2 cut(s)	154, 166
BstAPI	GCANNNNNTGC	1 cut(s)	373
BstBAI	YACGTR	1 cut(s)	211
BstBI	TTCGAA	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	1 cut(s)	268
BstDSI	CCRYGG	2 cut(s)	15, 355
BstF5I	GGATG	1 cut(s)	191
BstKTI	GATC	6 cut(s)	83, 141, 159, 320, 392, 435
BstMBI	GATC	6 cut(s)	80, 138, 156, 317, 389, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	80, 310
BstX2I	RGATCY	2 cut(s)	156, 432
BstYI	RGATCY	2 cut(s)	156, 432
BsuI	GTATCC	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	2 cut(s)	15, 355
BtsCI	GGATG	1 cut(s)	191
BtsIMutI	CAGTG	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	86
CspAI	ACCGGT	1 cut(s)	127
CviAII	CATG	2 cut(s)	182, 356
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	6 cut(s)	82, 140, 158, 319, 391, 434
DpnII	GATC	6 cut(s)	80, 138, 156, 317, 389, 432
DraIII	CACNNNGTG	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	154, 166
EarI	CTCTTC	2 cut(s)	154, 166
Eco130I	CCWWGG	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	74
Eco72I	CACGTG	1 cut(s)	211
Eco88I	CYCGRG	2 cut(s)	104, 362
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	2 cut(s)	185, 359
FaiI	YATR	6 cut(s)	183, 248, 357, 384, 506, 508
FatI	CATG	2 cut(s)	181, 355
Fnu4HI	GCNGC	2 cut(s)	69, 324
FokI	GGATG	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	69, 324
GluI	GCNGC	2 cut(s)	69, 324
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	2 cut(s)	91, 128
Hin1II	CATG	2 cut(s)	185, 359
HinfI	GANTC	2 cut(s)	291, 360
HpaII	CCGG	2 cut(s)	91, 128
HphI	GGTGA	3 cut(s)	131, 412, 474
Hpy166II	GTNNAC	3 cut(s)	88, 208, 265
Hpy188III	TCNNGA	2 cut(s)	28, 312
Hpy8I	GTNNAC	3 cut(s)	88, 208, 265
HpyAV	CCTTC	4 cut(s)	179, 364, 393, 489
HpyCH4III	ACNGT	3 cut(s)	226, 381, 451
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	68, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
HpyF3I	CTNAG	1 cut(s)	268
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	185, 359
Kzo9I	GATC	6 cut(s)	80, 138, 156, 317, 389, 432
Lsp1109I	GCAGC	2 cut(s)	80, 310
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	3 cut(s)	254, 276, 451
MalI	GATC	6 cut(s)	82, 140, 158, 319, 391, 434
MboI	GATC	6 cut(s)	80, 138, 156, 317, 389, 432
MboII	GAAGA	3 cut(s)	141, 153, 436
MflI	RGATCY	2 cut(s)	156, 432
MluCI	AATT	2 cut(s)	122, 239
MlyI	GAGTC	2 cut(s)	285, 354
MnlI	CCTC	4 cut(s)	39, 100, 357, 428
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	2 cut(s)	71, 323
MspI	CCGG	2 cut(s)	91, 128
MwoI	GCNNNNNNNGC	1 cut(s)	373
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	6 cut(s)	80, 138, 156, 317, 389, 432
NlaIII	CATG	2 cut(s)	185, 359
NmuCI	GTSAC	3 cut(s)	254, 276, 451
NspV	TTCGAA	1 cut(s)	473
PaeR7I	CTCGAG	2 cut(s)	104, 362
PaqCI	CACCTGC	1 cut(s)	107
PinAI	ACCGGT	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	70, 325
PleI	GAGTC	2 cut(s)	285, 354
PmaCI	CACGTG	1 cut(s)	211
PmlI	CACGTG	1 cut(s)	211
PpsI	GAGTC	2 cut(s)	285, 354
Ppu21I	YACGTR	1 cut(s)	211
PspCI	CACGTG	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	74
PspXI	VCTCGAGB	2 cut(s)	104, 362
PsuI	RGATCY	2 cut(s)	156, 432
PvuII	CAGCTG	2 cut(s)	71, 323
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	2 cut(s)	69, 324
Sau3AI	GATC	6 cut(s)	80, 138, 156, 317, 389, 432
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	2 cut(s)	285, 354
SfaNI	GCATC	1 cut(s)	55
Sfr274I	CTCGAG	2 cut(s)	104, 362
SfuI	TTCGAA	1 cut(s)	473
SinI	GGWCC	1 cut(s)	74
SlaI	CTCGAG	2 cut(s)	104, 362
SmlI	CTYRAG	3 cut(s)	104, 348, 362
SmoI	CTYRAG	3 cut(s)	104, 348, 362
Sse9I	AATT	2 cut(s)	122, 239
SspI	AATATT	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	3 cut(s)	226, 381, 451
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	3 cut(s)	105, 363, 473
TaqII	GACCGA	1 cut(s)	91
TasI	AATT	2 cut(s)	122, 239
TatI	WGTACW	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	3 cut(s)	254, 276, 451
TseI	GCWGC	2 cut(s)	68, 323
Tsp45I	GTSAC	3 cut(s)	254, 276, 451
TspDTI	ATGAA	4 cut(s)	17, 122, 180, 198
TspGWI	ACGGA	3 cut(s)	131, 184, 284
TspRI	CASTG	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XhoI	CTCGAG	2 cut(s)	104, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.