FvH4_1g23770

Zeaxanthin epoxidase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
15631441 .. 15633845
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23770.t1

Sequence Viewer

Length: 1224 bp
ATGGGCACAATAACGGTGGAGAATGTGGTGATAGTAGGAGGAGGGATAGCCGGGTTGGCGACGGGGGTGGCGCTGAAGAGAGCTGGAATAGAAGCATTGGTGTTGGAGAGATCCAAAGGGCTGCGAGTCAACGGTACAGCCTTGACTCTATTCCCGAACGCCTGGTTTGCTCTTGATTCCTTGGGGGTTTCTCATAAGCTTGCTTCTTATACCCCCTCTCTCAAGGGATACATAACTGATATTGATACTGGAGAAGTACGAGAACTCTCTTTCACCAAAGCCAATGGTGATGCAGTTGGACCAAGATCAGTACACCGGAAAGCCTTGCTCGAGACATTGGCAGGTGAATTACCCGTTCATTCAATCCGTTTCTCTTCCAAGATCTCTGCTATTGACACCCAACAACATGAAGGTTCATCCATTGCCATTGTTCACATGGAAAATGGAACAATCATTAAAGCAAAGGTTCTCATAGGGTGTGATGGGGTTCACTCAGTGGTGTCACGCTGGTTAGGACTCCGTGAACCAGTCCATTCAGGTCGATCAGCTGTCCGTGGCTTGGCTGTGTATCCTCAAGGCCATGGACTCAAGCAGATCGTGCAACAGTACGCAGGATCAGGCAGAAGGGCTGGCTTCGTACCCCTCAACGACAAAGAGGTCTACTGGTTCTTCACTGGCACATCTCCAGCTAAAGGGACCTCCCTGGCAGAAGATCCTGAAGAGATACAAAAAGAAATACTAGAGAATTATGCCAATGACCTCCCTCCTATATACTTAGATGTTGTGCAGCACTCAGACCTTTCGACATTAACATGGGCACCGCTGATGTTTAGGTATCCCTGGAACGTAGTATTTGGCAGCTTAAGCAAGCAAAACATCACGGTGGCCGGCGATGCCATGCACCCCATGACACCTGATTTAGCACAGGGGGGTTGCTCAGCATTAGAAGATGCAGTTATCTTAGGCAGGCATATTGGGACATCCTTTAAACATAACGGACACGTACTTGTGCCGAAAGAGATGAGTGAAGTACTGAGCAAATATGTGGAAGAAAGAAGGTGGCGCATCGCTTTGTTGATCACAGGGTCATATATAGCAGGATGGGTGCAGCAGGGAGGATCTGGATGGGGTTCGAAGTTCTTGAGAGACACCGTTTATTATAAGTTCCTTTTCATGAAGCTGGTTAGATATGTGAACTATGACTCCGGAAAACTCGACTTCTAG

Protein Analysis

408

Amino Acids

44.39

Weight (kDa)

8.63

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 8 - 355 1.5e-26 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1161
AarI CACCTGC 1 cut(s) 332
AasI GACNNNNNNGTC 1 cut(s) 656
Acc36I ACCTGC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 817
AccI GTMKAC 1 cut(s) 660
AccIII TCCGGA 1 cut(s) 1205
AciI CCGC 1 cut(s) 821
AclWI GGATC 4 cut(s) 105, 622, 707, 1126
AcoI YGGCCR 1 cut(s) 885
AcuI CTGAAG 2 cut(s) 95, 738
AdeI CACNNNGTG 1 cut(s) 496
AfaI GTAC 7 cut(s) 136, 258, 312, 608, 639, 1005, 1032
AfiI CCNNNNNNNGG 2 cut(s) 559, 692
AflII CTTAAG 1 cut(s) 862
AflIII ACRYGT 1 cut(s) 1000
AgsI TTSAA 1 cut(s) 363
AjnI CCWGG 3 cut(s) 161, 702, 839
AloI GAACNNNNNNTCC 2 cut(s) 1187, 1219
AluBI AGCT 6 cut(s) 83, 199, 548, 689, 861, 1180
AluI AGCT 6 cut(s) 83, 199, 548, 689, 861, 1180
Alw26I GTCTC 2 cut(s) 326, 1140
AlwI GGATC 4 cut(s) 105, 622, 707, 1126
Ama87I CYCGRG 1 cut(s) 329
Aor13HI TCCGGA 1 cut(s) 1205
AoxI GGCC 2 cut(s) 577, 885
ApeKI GCWGC 4 cut(s) 121, 787, 858, 1108
AspLEI GCGC 2 cut(s) 73, 1065
AspS9I GGNCC 2 cut(s) 299, 696
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 4 cut(s) 40, 265, 299, 356
AsuII TTCGAA 1 cut(s) 1133
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 2 cut(s) 299, 696
BaeGI GKGCMC 2 cut(s) 8, 820
BanI GGYRCC 1 cut(s) 817
BbvI GCAGC 4 cut(s) 108, 799, 870, 1120
BccI CCATC 3 cut(s) 476, 1095, 1119
BciT130I CCWGG 3 cut(s) 163, 704, 841
BciVI GTATCC 3 cut(s) 221, 579, 846
BclI TGATCA 1 cut(s) 1077
BcnI CCSGG 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 326, 1140
BfaI CTAG 2 cut(s) 740, 1222
BfoI RGCGCY 1 cut(s) 74
BfrI CTTAAG 1 cut(s) 862
BfuAI ACCTGC 1 cut(s) 332
BfuI GTATCC 3 cut(s) 221, 579, 846
BglI GCCNNNNNGGC 1 cut(s) 56
BglII AGATCT 1 cut(s) 381
BisI GCNGC 4 cut(s) 122, 788, 859, 1109
BlpI GCTNAGC 1 cut(s) 937
BlsI GCNGC 4 cut(s) 123, 789, 860, 1110
BmcAI AGTACT 1 cut(s) 1032
Bme1390I CCNGG 4 cut(s) 52, 163, 704, 841
Bme18I GGWCC 2 cut(s) 299, 696
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 2 cut(s) 299, 696
BmiI GGNNCC 2 cut(s) 697, 819
BmrFI CCNGG 4 cut(s) 52, 163, 704, 841
BmsI GCATC 4 cut(s) 280, 883, 940, 1074
BpmI CTGGAG 2 cut(s) 270, 669
Bpu1102I GCTNAGC 1 cut(s) 937
Bpu14I TTCGAA 1 cut(s) 1133
BpuEI CTTGAG 4 cut(s) 206, 558, 572, 1162
BpuMI CCSGG 1 cut(s) 52
BsaAI YACGTR 1 cut(s) 1003
BsaJI CCNNGG 5 cut(s) 180, 553, 580, 702, 839
BsaWI WCCGGW 2 cut(s) 315, 1205
BsaXI ACNNNNNCTCC 2 cut(s) 1187, 1217
Bsc4I CCNNNNNNNGG 2 cut(s) 559, 692
Bse118I RCCGGY 1 cut(s) 887
Bse1I ACTGG 4 cut(s) 253, 527, 668, 679
Bse3DI GCAATG 1 cut(s) 420
BseAI TCCGGA 1 cut(s) 1205
BseBI CCWGG 3 cut(s) 163, 704, 841
BseDI CCNNGG 5 cut(s) 180, 553, 580, 702, 839
BseGI GGATG 4 cut(s) 416, 980, 1106, 1130
BseLI CCNNNNNNNGG 2 cut(s) 559, 692
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 4 cut(s) 507, 807, 951, 1025
BseNI ACTGG 4 cut(s) 253, 527, 668, 679
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 2 cut(s) 8, 820
BseXI GCAGC 4 cut(s) 108, 799, 870, 1120
BsgI GTGCAG 2 cut(s) 806, 1127
BshFI GGCC 2 cut(s) 579, 887
BshNI GGYRCC 1 cut(s) 817
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 4 cut(s) 51, 316, 888, 1206
BslFI GGGAC 2 cut(s) 709, 991
BslI CCNNNNNNNGG 2 cut(s) 559, 692
BsmAI GTCTC 2 cut(s) 326, 1140
BsmFI GGGAC 2 cut(s) 709, 991
BsnI GGCC 2 cut(s) 579, 887
BsoBI CYCGRG 1 cut(s) 329
Bsp119I TTCGAA 1 cut(s) 1133
Bsp1286I GDGCHC 2 cut(s) 8, 820
Bsp13I TCCGGA 1 cut(s) 1205
Bsp143I GATC 9 cut(s) 110, 305, 381, 542, 594, 614, 712, 1077, 1118
Bsp1720I GCTNAGC 1 cut(s) 937
Bsp19I CCATGG 1 cut(s) 580
BspACI CCGC 1 cut(s) 821
BspANI GGCC 2 cut(s) 579, 887
BspCNI CTCAG 4 cut(s) 506, 806, 950, 1026
BspEI TCCGGA 1 cut(s) 1205
BspHI TCATGA 1 cut(s) 1173
BspLI GGNNCC 2 cut(s) 697, 819
BspMI ACCTGC 1 cut(s) 332
BspPI GGATC 4 cut(s) 105, 622, 707, 1126
BspT104I TTCGAA 1 cut(s) 1133
BspT107I GGYRCC 1 cut(s) 817
BspTI CTTAAG 1 cut(s) 862
BsrDI GCAATG 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 887
BsrI ACTGG 4 cut(s) 253, 527, 668, 679
BssAI RCCGGY 1 cut(s) 887
BssECI CCNNGG 5 cut(s) 180, 553, 580, 702, 839
BssMI GATC 9 cut(s) 110, 305, 381, 542, 594, 614, 712, 1077, 1118
BssT1I CCWWGG 2 cut(s) 180, 580
Bst2UI CCWGG 3 cut(s) 163, 704, 841
Bst4CI ACNGT 5 cut(s) 16, 134, 606, 883, 1153
Bst6I CTCTTC 3 cut(s) 71, 379, 714
BstAFI CTTAAG 1 cut(s) 862
BstAPI GCANNNNNTGC 1 cut(s) 598
BstBAI YACGTR 1 cut(s) 1003
BstBI TTCGAA 1 cut(s) 1133
BstC8I GCNNGC 5 cut(s) 201, 631, 869, 889, 968
BstDEI CTNAG 6 cut(s) 493, 775, 793, 937, 961, 1034
BstDSI CCRYGG 2 cut(s) 553, 580
BstF5I GGATG 4 cut(s) 416, 980, 1106, 1130
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 2 cut(s) 73, 1065
BstKTI GATC 9 cut(s) 113, 308, 384, 545, 597, 617, 715, 1080, 1121
BstMAI GTCTC 2 cut(s) 326, 1140
BstMBI GATC 9 cut(s) 110, 305, 381, 542, 594, 614, 712, 1077, 1118
BstMWI GCNNNNNNNGC 5 cut(s) 56, 167, 598, 864, 893
BstNI CCWGG 3 cut(s) 163, 704, 841
BstSCI CCNGG 4 cut(s) 50, 161, 702, 839
BstSLI GKGCMC 2 cut(s) 8, 820
BstV1I GCAGC 4 cut(s) 108, 799, 870, 1120
BstX2I RGATCY 4 cut(s) 110, 381, 712, 1118
BstYI RGATCY 4 cut(s) 110, 381, 712, 1118
BsuI GTATCC 3 cut(s) 221, 579, 846
BsuRI GGCC 2 cut(s) 579, 887
BtgI CCRYGG 2 cut(s) 553, 580
BtgZI GCGATG 2 cut(s) 906, 1051
BtsCI GGATG 4 cut(s) 416, 980, 1106, 1130
BtsIMutI CAGTG 2 cut(s) 501, 672
BveI ACCTGC 1 cut(s) 332
Cac8I GCNNGC 5 cut(s) 201, 631, 869, 889, 968
CciI TCATGA 1 cut(s) 1173
CfoI GCGC 2 cut(s) 73, 1065
Cfr10I RCCGGY 1 cut(s) 887
Cfr13I GGNCC 2 cut(s) 299, 696
Csp6I GTAC 7 cut(s) 135, 257, 311, 607, 638, 1004, 1031
CspCI CAANNNNNGTGG 1 cut(s) 32
CviAII CATG 7 cut(s) 407, 436, 581, 813, 898, 907, 1174
CviQI GTAC 7 cut(s) 135, 257, 311, 607, 638, 1004, 1031
DdeI CTNAG 6 cut(s) 493, 775, 793, 937, 961, 1034
DpnI GATC 9 cut(s) 112, 307, 383, 544, 596, 616, 714, 1079, 1120
DpnII GATC 9 cut(s) 110, 305, 381, 542, 594, 614, 712, 1077, 1118
DraI TTTAAA 1 cut(s) 988
DraIII CACNNNGTG 1 cut(s) 496
DrdI GACNNNNNNGTC 1 cut(s) 656
DseDI GACNNNNNNGTC 1 cut(s) 656
EaeI YGGCCR 1 cut(s) 885
Eam1104I CTCTTC 3 cut(s) 71, 379, 714
EarI CTCTTC 3 cut(s) 71, 379, 714
Eco130I CCWWGG 2 cut(s) 180, 580
Eco47I GGWCC 2 cut(s) 299, 696
Eco57I CTGAAG 2 cut(s) 95, 738
Eco88I CYCGRG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 696
EcoRII CCWGG 3 cut(s) 161, 702, 839
EcoT14I CCWWGG 2 cut(s) 180, 580
ErhI CCWWGG 2 cut(s) 180, 580
FaeI CATG 7 cut(s) 410, 439, 584, 816, 901, 910, 1177
FaqI GGGAC 2 cut(s) 709, 991
FatI CATG 7 cut(s) 406, 435, 580, 812, 897, 906, 1173
FbaI TGATCA 1 cut(s) 1077
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 4 cut(s) 122, 788, 859, 1109
FokI GGATG 4 cut(s) 403, 967, 1113, 1137
Fsp4HI GCNGC 4 cut(s) 122, 788, 859, 1109
FspBI CTAG 2 cut(s) 740, 1222
GlaI GCGC 2 cut(s) 72, 1064
GluI GCNGC 4 cut(s) 122, 788, 859, 1109
GsuI CTGGAG 2 cut(s) 270, 669
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 2 cut(s) 579, 887
HapII CCGG 4 cut(s) 51, 316, 888, 1206
HhaI GCGC 2 cut(s) 73, 1065
Hin1II CATG 7 cut(s) 410, 439, 584, 816, 901, 910, 1177
Hin6I GCGC 2 cut(s) 71, 1063
HinP1I GCGC 2 cut(s) 71, 1063
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 6 cut(s) 126, 145, 176, 516, 585, 1202
HpaII CCGG 4 cut(s) 51, 316, 888, 1206
HphI GGTGA 4 cut(s) 40, 265, 299, 356
Hpy166II GTNNAC 7 cut(s) 130, 313, 433, 490, 524, 661, 1195
Hpy188I TCNGA 1 cut(s) 796
Hpy188III TCNNGA 8 cut(s) 154, 173, 331, 716, 1122, 1141, 1174, 1206
Hpy8I GTNNAC 7 cut(s) 130, 313, 433, 490, 524, 661, 1195
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 3 cut(s) 404, 618, 1050
HpyCH4III ACNGT 5 cut(s) 16, 134, 606, 883, 1153
HpyCH4IV ACGT 2 cut(s) 846, 1002
HpyCH4V TGCA 6 cut(s) 293, 601, 787, 901, 953, 1108
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 167, 598, 864, 893
HpyF3I CTNAG 6 cut(s) 493, 775, 793, 937, 961, 1034
HpySE526I ACGT 2 cut(s) 846, 1002
Hsp92II CATG 7 cut(s) 410, 439, 584, 816, 901, 910, 1177
HspAI GCGC 2 cut(s) 71, 1063
Kpn2I TCCGGA 1 cut(s) 1205
KroI GCCGGC 1 cut(s) 887
KroNI GCCGGC 1 cut(s) 889
Ksp22I TGATCA 1 cut(s) 1077
Kzo9I GATC 9 cut(s) 110, 305, 381, 542, 594, 614, 712, 1077, 1118
Lsp1109I GCAGC 4 cut(s) 108, 799, 870, 1120
LweI GCATC 4 cut(s) 280, 883, 940, 1074
MaeI CTAG 2 cut(s) 740, 1222
MaeII ACGT 2 cut(s) 846, 1002
MaeIII GTNAC 1 cut(s) 501
MalI GATC 9 cut(s) 112, 307, 383, 544, 596, 616, 714, 1079, 1120
MboI GATC 9 cut(s) 110, 305, 381, 542, 594, 614, 712, 1077, 1118
MboII GAAGA 7 cut(s) 88, 366, 661, 722, 731, 959, 1061
MflI RGATCY 4 cut(s) 110, 381, 712, 1118
MhlI GDGCHC 2 cut(s) 8, 820
MluCI AATT 2 cut(s) 347, 745
MlyI GAGTC 5 cut(s) 135, 139, 510, 579, 1196
MmeI TCCRAC 2 cut(s) 84, 277
MroI TCCGGA 1 cut(s) 1205
MroNI GCCGGC 1 cut(s) 887
MseI TTAA 4 cut(s) 456, 809, 863, 987
MslI CAYNNNNRTG 2 cut(s) 811, 881
MspA1I CMGCKG 2 cut(s) 548, 823
MspCI CTTAAG 1 cut(s) 862
MspI CCGG 4 cut(s) 51, 316, 888, 1206
MspR9I CCNGG 4 cut(s) 52, 163, 704, 841
MvaI CCWGG 3 cut(s) 163, 704, 841
MwoI GCNNNNNNNGC 5 cut(s) 56, 167, 598, 864, 893
NaeI GCCGGC 1 cut(s) 889
NciI CCSGG 1 cut(s) 52
NcoI CCATGG 1 cut(s) 580
NdeII GATC 9 cut(s) 110, 305, 381, 542, 594, 614, 712, 1077, 1118
NgoMIV GCCGGC 1 cut(s) 887
NlaIII CATG 7 cut(s) 410, 439, 584, 816, 901, 910, 1177
NlaIV GGNNCC 2 cut(s) 697, 819
NmuCI GTSAC 1 cut(s) 501
NspV TTCGAA 1 cut(s) 1133
PaeR7I CTCGAG 1 cut(s) 329
PagI TCATGA 1 cut(s) 1173
PaqCI CACCTGC 1 cut(s) 332
PdiI GCCGGC 1 cut(s) 889
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 4 cut(s) 123, 789, 860, 1110
PleI GAGTC 5 cut(s) 134, 139, 510, 579, 1196
PpsI GAGTC 5 cut(s) 134, 139, 510, 579, 1196
Ppu21I YACGTR 1 cut(s) 1003
PpuMI RGGWCCY 1 cut(s) 696
PsiI TTATAA 1 cut(s) 1161
Psp5II RGGWCCY 1 cut(s) 696
Psp6I CCWGG 3 cut(s) 161, 702, 839
PspGI CCWGG 3 cut(s) 161, 702, 839
PspN4I GGNNCC 2 cut(s) 697, 819
PspPI GGNCC 2 cut(s) 299, 696
PspPPI RGGWCCY 1 cut(s) 696
PsuI RGATCY 4 cut(s) 110, 381, 712, 1118
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 7 cut(s) 136, 258, 312, 608, 639, 1005, 1032
RsaNI GTAC 7 cut(s) 135, 257, 311, 607, 638, 1004, 1031
RseI CAYNNNNRTG 2 cut(s) 811, 881
SaqAI TTAA 4 cut(s) 456, 809, 863, 987
SatI GCNGC 4 cut(s) 122, 788, 859, 1109
Sau3AI GATC 9 cut(s) 110, 305, 381, 542, 594, 614, 712, 1077, 1118
Sau96I GGNCC 2 cut(s) 299, 696
ScaI AGTACT 1 cut(s) 1032
SchI GAGTC 5 cut(s) 135, 139, 510, 579, 1196
ScrFI CCNGG 4 cut(s) 52, 163, 704, 841
SduI GDGCHC 2 cut(s) 8, 820
SfaNI GCATC 4 cut(s) 280, 883, 940, 1074
Sfr274I CTCGAG 1 cut(s) 329
SfuI TTCGAA 1 cut(s) 1133
SinI GGWCC 2 cut(s) 299, 696
SlaI CTCGAG 1 cut(s) 329
SmiMI CAYNNNNRTG 2 cut(s) 811, 881
SmlI CTYRAG 6 cut(s) 221, 329, 573, 587, 862, 1141
SmoI CTYRAG 6 cut(s) 221, 329, 573, 587, 862, 1141
Sse9I AATT 2 cut(s) 347, 745
SsiI CCGC 1 cut(s) 821
SspMI CTAG 2 cut(s) 740, 1222
StyD4I CCNGG 4 cut(s) 50, 161, 702, 839
StyI CCWWGG 2 cut(s) 180, 580
TaaI ACNGT 5 cut(s) 16, 134, 606, 883, 1153
TaiI ACGT 2 cut(s) 849, 1005
TaqI TCGA 5 cut(s) 330, 541, 803, 1133, 1215
TasI AATT 2 cut(s) 347, 745
TatI WGTACW 2 cut(s) 310, 1030
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 4 cut(s) 456, 809, 863, 987
Tru9I TTAA 4 cut(s) 456, 809, 863, 987
TscAI CASTG 2 cut(s) 501, 679
TseFI GTSAC 1 cut(s) 501
TseI GCWGC 4 cut(s) 121, 787, 858, 1108
Tsp45I GTSAC 1 cut(s) 501
TspDTI ATGAA 5 cut(s) 347, 405, 423, 1162, 1190
TspGWI ACGGA 4 cut(s) 356, 509, 542, 1011
TspRI CASTG 2 cut(s) 501, 679
Vha464I CTTAAG 1 cut(s) 862
VpaK11BI GGWCC 2 cut(s) 299, 696
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XhoI CTCGAG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 660
XspI CTAG 2 cut(s) 740, 1222
ZrmI AGTACT 1 cut(s) 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.