Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001290

Physical Location & Seq

Genomic Coordinates Forward (+)

32657743 .. 32761155

Gene Structure 103413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG291500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGCACAACCGTGGAGGATGTGGTGATAGTGGGAGGAGGGATAGCCGGGCTGGCGACGGCGGTGGCGCTAAAGAGAGCTGGAATAGAAGCGTTGGTGTTGGAGAGATCGGAAGGGCTGCGAGCCACCGGTGCAGCCTTGACTCTATTCCCAAACGCCTGGGTCGCTCTTGATGCCTTGGGGGTTTCTCATAAGCTTGCTTCATATACCTCCTCTCTCAAGGGATATGTAACTGATGTTGATACTGGAGAAGTTCAAGAAATCTCTTTCACCAAAGCCAATGGTGATGCAGTTGGACCGAGATCAGTACACCGGAAAGCCTTGCTCGAGGCTTTGGCAGATGAATTACCGGTTCTTTCAATCCGTTTCTCTTCCAAGATCTCTGCTATCGAAACCCAACAACATGAAGGCTCATCCATTGCCATTGTTCACATGGAAAATGGAACTGTCATTAAAGCAAAGGTTCTCATAGGGTGTGACGGGGTTCACTCAGTGGTGTCACGTTGGTTAGGACTCCGTGAACCAGTCTTTTCAGGTCGATCAGCTGTTCGTGGCTTGGCTGTTTATCCTCAAGGCCATGGACTCGAGCAGAATGTGCGACAGTATGTAGGATCAGGCAGAAGGGCTGGCTTCGTTCCCCTCACCGACAAAGAGATCTATTGGTTCTTCTCTGGCATATCTCCAGCTAAAGGTTCGAAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

234

Amino Acids

24.68

Weight (kDa)

8.67

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	7 - 187	9.5e-20	FAD binding domain
DAO	PF01266	7 - 54	7.6e-08	FAD dependent oxidoreductase
FAD_oxidored	PF12831	7 - 159	2e-06	FAD dependent oxidoreductase
Lycopene_cycl	PF05834	7 - 164	3.6e-06	Lycopene cyclase protein
NAD_binding_8	PF13450	10 - 40	3e-06	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001290)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23740 FvH4_1g23750 FvH4_1g23770
malus_domestica	MD11G1231700.v1.1 MD11G1231900.v1.1
prunus_persica	Prupe.6G162100_v2.0.a1
pyrus_communis	pycom11g20520
rosa_chinensis	RchiOBHm_Chr2g0119591 RchiOBHm_Chr2g0119621 RchiOBHm_Chr2g0119641 RchiOBHm_Chr5g0013091
rosa_laevigata	RLG00000018140 RLG00000018142 RLG00000018474 RLG00000018477 RLG00000018479 RLG00000018481 RLG00000018482 RLG00000031985
rosa_multiflora	Rmu_sc0000825.1_g000006 Rmu_sc0000825.1_g000015 Rmu_sc0003158.1_g000005 Rmu_sc0003892.1_g000012 Rmu_sc0027906.1_g000001 Rmu_sc0040685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063490 Rroxscaffold_2G00124140 Rroxscaffold_2G00124230 Rroxscaffold_2G00124240 Rroxscaffold_2G00124250
rosa_rugosa	Rorug02G0222300 Rorug02G0222400 Rorug02G0222400 Rorug02G0222400 Rorug02G0222500.1 Rorug02G0223100 Rorug05G0007200
rosa_samantha	Rh2AG279800 Rh2AG280300 Rh2BG291500 Rh2BG291900 Rh2DG286500 Rh2DG286900 Rh2DG287300 Rh2DG305700 Rh2DG305900 Rh2DG306000 Rh5AG101300 Rh5BG097800 Rh5CG109900 Rh5DG096900
rosa_wichuraiana	Rw2G022360 Rw2G022400 Rw2G022410 Rw5G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	1 cut(s)	619
AdeI	CACNNNGTG	1 cut(s)	493
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	689
AgeI	ACCGGT	2 cut(s)	128, 349
AgsI	TTSAA	2 cut(s)	257, 360
AjnI	CCWGG	1 cut(s)	158
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	4 cut(s)	80, 196, 545, 686
AluI	AGCT	4 cut(s)	80, 196, 545, 686
AlwI	GGATC	1 cut(s)	619
Ama87I	CYCGRG	2 cut(s)	326, 584
AoxI	GGCC	1 cut(s)	574
ApeKI	GCWGC	2 cut(s)	118, 134
AsiGI	ACCGGT	2 cut(s)	128, 349
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	4 cut(s)	37, 262, 296, 634
AsuII	TTCGAA	1 cut(s)	695
AvaI	CYCGRG	2 cut(s)	326, 584
AvaII	GGWCC	1 cut(s)	296
BaeGI	GKGCMC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	105, 146
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	49
BfoI	RGCGCY	1 cut(s)	71
BglI	GCCNNNNNGGC	1 cut(s)	53
BglII	AGATCT	2 cut(s)	378, 654
BisI	GCNGC	2 cut(s)	119, 135
BlsI	GCNGC	2 cut(s)	120, 136
Bme1390I	CCNGG	2 cut(s)	49, 160
Bme18I	GGWCC	1 cut(s)	296
BmeT110I	CYCGRG	2 cut(s)	326, 584
BmgT120I	GGNCC	1 cut(s)	296
BmrFI	CCNGG	2 cut(s)	49, 160
BmsI	GCATC	2 cut(s)	163, 277
BpmI	CTGGAG	2 cut(s)	267, 666
Bpu14I	TTCGAA	1 cut(s)	695
BpuEI	CTTGAG	2 cut(s)	203, 555
BpuMI	CCSGG	1 cut(s)	49
BsaJI	CCNNGG	4 cut(s)	12, 159, 177, 577
BsaWI	WCCGGW	3 cut(s)	128, 312, 349
Bsc4I	CCNNNNNNNGG	1 cut(s)	689
Bse118I	RCCGGY	2 cut(s)	128, 349
Bse1I	ACTGG	2 cut(s)	250, 524
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	4 cut(s)	12, 159, 177, 577
BseGI	GGATG	2 cut(s)	25, 413
BseLI	CCNNNNNNNGG	1 cut(s)	689
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	2 cut(s)	250, 524
BseRI	GAGGAG	2 cut(s)	51, 202
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	105, 146
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	576
BshTI	ACCGGT	2 cut(s)	128, 349
BsiHKCI	CYCGRG	2 cut(s)	326, 584
BsiSI	CCGG	4 cut(s)	48, 129, 313, 350
BslI	CCNNNNNNNGG	1 cut(s)	689
BsnI	GGCC	1 cut(s)	576
BsoBI	CYCGRG	2 cut(s)	326, 584
Bsp119I	TTCGAA	1 cut(s)	695
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	6 cut(s)	107, 302, 378, 539, 611, 654
Bsp19I	CCATGG	1 cut(s)	577
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	576
BspCNI	CTCAG	1 cut(s)	503
BspPI	GGATC	1 cut(s)	619
BspT104I	TTCGAA	1 cut(s)	695
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	2 cut(s)	128, 349
BsrI	ACTGG	2 cut(s)	250, 524
BssAI	RCCGGY	2 cut(s)	128, 349
BssECI	CCNNGG	4 cut(s)	12, 159, 177, 577
BssMI	GATC	6 cut(s)	107, 302, 378, 539, 611, 654
BssT1I	CCWWGG	2 cut(s)	177, 577
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	3 cut(s)	13, 448, 603
Bst6I	CTCTTC	1 cut(s)	376
BstAPI	GCANNNNNTGC	1 cut(s)	595
BstBI	TTCGAA	1 cut(s)	695
BstC8I	GCNNGC	4 cut(s)	54, 123, 198, 628
BstDEI	CTNAG	1 cut(s)	490
BstDSI	CCRYGG	2 cut(s)	12, 577
BstF5I	GGATG	2 cut(s)	25, 413
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	6 cut(s)	110, 305, 381, 542, 614, 657
BstMBI	GATC	6 cut(s)	107, 302, 378, 539, 611, 654
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 131, 164, 173, 595
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	47, 158
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	105, 146
BstX2I	RGATCY	2 cut(s)	378, 654
BstXI	CCANNNNNNTGG	1 cut(s)	159
BstYI	RGATCY	2 cut(s)	378, 654
BsuRI	GGCC	1 cut(s)	576
BtgI	CCRYGG	2 cut(s)	12, 577
BtsCI	GGATG	2 cut(s)	25, 413
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	4 cut(s)	54, 123, 198, 628
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	2 cut(s)	128, 349
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	308
CspAI	ACCGGT	2 cut(s)	128, 349
CviAII	CATG	3 cut(s)	404, 433, 578
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	1 cut(s)	490
DpnI	GATC	6 cut(s)	109, 304, 380, 541, 613, 656
DpnII	GATC	6 cut(s)	107, 302, 378, 539, 611, 654
DraIII	CACNNNGTG	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Eco130I	CCWWGG	2 cut(s)	177, 577
Eco47I	GGWCC	1 cut(s)	296
Eco88I	CYCGRG	2 cut(s)	326, 584
EcoRII	CCWGG	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	177, 577
ErhI	CCWWGG	2 cut(s)	177, 577
FaeI	CATG	3 cut(s)	407, 436, 581
FatI	CATG	3 cut(s)	403, 432, 577
Fnu4HI	GCNGC	2 cut(s)	119, 135
FokI	GGATG	2 cut(s)	32, 400
Fsp4HI	GCNGC	2 cut(s)	119, 135
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	2 cut(s)	119, 135
GsuI	CTGGAG	2 cut(s)	267, 666
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	576
HapII	CCGG	4 cut(s)	48, 129, 313, 350
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	3 cut(s)	407, 436, 581
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	3 cut(s)	142, 513, 582
HpaII	CCGG	4 cut(s)	48, 129, 313, 350
HphI	GGTGA	4 cut(s)	37, 262, 296, 634
Hpy166II	GTNNAC	4 cut(s)	310, 430, 487, 521
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	2 cut(s)	170, 257
Hpy8I	GTNNAC	4 cut(s)	310, 430, 487, 521
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	107, 401, 615
HpyCH4III	ACNGT	3 cut(s)	13, 448, 603
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	2 cut(s)	134, 290
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 131, 164, 173, 595
HpyF3I	CTNAG	1 cut(s)	490
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	3 cut(s)	407, 436, 581
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	6 cut(s)	107, 302, 378, 539, 611, 654
Lsp1109I	GCAGC	2 cut(s)	105, 146
LweI	GCATC	2 cut(s)	163, 277
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	3 cut(s)	229, 476, 498
MalI	GATC	6 cut(s)	109, 304, 380, 541, 613, 656
MboI	GATC	6 cut(s)	107, 302, 378, 539, 611, 654
MboII	GAAGA	2 cut(s)	363, 658
MflI	RGATCY	2 cut(s)	378, 654
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	344
MlyI	GAGTC	3 cut(s)	136, 507, 576
MmeI	TCCRAC	2 cut(s)	81, 274
MnlI	CCTC	8 cut(s)	10, 29, 32, 220, 223, 322, 579, 650
MseI	TTAA	2 cut(s)	453, 703
MslI	CAYNNNNRTG	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	4 cut(s)	48, 129, 313, 350
MspR9I	CCNGG	2 cut(s)	49, 160
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	5 cut(s)	53, 131, 164, 173, 595
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	577
NdeII	GATC	6 cut(s)	107, 302, 378, 539, 611, 654
NlaIII	CATG	3 cut(s)	407, 436, 581
NmuCI	GTSAC	2 cut(s)	476, 498
NspV	TTCGAA	1 cut(s)	695
OliI	CACNNNNGTG	1 cut(s)	11
PaeR7I	CTCGAG	2 cut(s)	326, 584
PinAI	ACCGGT	2 cut(s)	128, 349
PkrI	GCNGC	2 cut(s)	120, 136
PleI	GAGTC	3 cut(s)	136, 507, 576
PpsI	GAGTC	3 cut(s)	136, 507, 576
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	296
PspXI	VCTCGAGB	2 cut(s)	326, 584
PsuI	RGATCY	2 cut(s)	378, 654
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	453, 703
SatI	GCNGC	2 cut(s)	119, 135
Sau3AI	GATC	6 cut(s)	107, 302, 378, 539, 611, 654
Sau96I	GGNCC	1 cut(s)	296
SchI	GAGTC	3 cut(s)	136, 507, 576
ScrFI	CCNGG	2 cut(s)	49, 160
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	163, 277
Sfr274I	CTCGAG	2 cut(s)	326, 584
SfuI	TTCGAA	1 cut(s)	695
SgrAI	CRCCGGYG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	296
SlaI	CTCGAG	2 cut(s)	326, 584
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	4 cut(s)	218, 326, 570, 584
SmoI	CTYRAG	4 cut(s)	218, 326, 570, 584
Sse9I	AATT	1 cut(s)	344
SsiI	CCGC	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	47, 158
StyI	CCWWGG	2 cut(s)	177, 577
TaaI	ACNGT	3 cut(s)	13, 448, 603
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	5 cut(s)	327, 390, 538, 585, 695
TaqII	GACCGA	1 cut(s)	313
TasI	AATT	1 cut(s)	344
TatI	WGTACW	1 cut(s)	307
Tru1I	TTAA	2 cut(s)	453, 703
Tru9I	TTAA	2 cut(s)	453, 703
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	2 cut(s)	476, 498
TseI	GCWGC	2 cut(s)	118, 134
Tsp45I	GTSAC	2 cut(s)	476, 498
TspDTI	ATGAA	3 cut(s)	192, 357, 420
TspGWI	ACGGA	2 cut(s)	353, 506
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XhoI	CTCGAG	2 cut(s)	326, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.