Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027906.1

Orthogroup ID

OG0001290

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 436

Gene Structure 436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027906.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

gttctcatagggtgtgacggggttcactcagtggtgtcacgttggttcggactccgtgaaccagtcttttcaggtcgatcagctgttcgtggcttggctgtttatcctcaaggccatggactcgagcagaaagtgcgacggtatgtaggatcaggcagaaacgctggcttcgttcccctcaccgacaaagagatctattggttcttctctggcatctgtccagctaaaagttcgaaaccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

80

Amino Acids

8.78

Weight (kDa)

9.92

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001290)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23740 FvH4_1g23750 FvH4_1g23770
malus_domestica	MD11G1231700.v1.1 MD11G1231900.v1.1
prunus_persica	Prupe.6G162100_v2.0.a1
pyrus_communis	pycom11g20520
rosa_chinensis	RchiOBHm_Chr2g0119591 RchiOBHm_Chr2g0119621 RchiOBHm_Chr2g0119641 RchiOBHm_Chr5g0013091
rosa_laevigata	RLG00000018140 RLG00000018142 RLG00000018474 RLG00000018477 RLG00000018479 RLG00000018481 RLG00000018482 RLG00000031985
rosa_multiflora	Rmu_sc0000825.1_g000006 Rmu_sc0000825.1_g000015 Rmu_sc0003158.1_g000005 Rmu_sc0003892.1_g000012 Rmu_sc0027906.1_g000001 Rmu_sc0040685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063490 Rroxscaffold_2G00124140 Rroxscaffold_2G00124230 Rroxscaffold_2G00124240 Rroxscaffold_2G00124250
rosa_rugosa	Rorug02G0222300 Rorug02G0222400 Rorug02G0222400 Rorug02G0222400 Rorug02G0222500.1 Rorug02G0223100 Rorug05G0007200
rosa_samantha	Rh2AG279800 Rh2AG280300 Rh2BG291500 Rh2BG291900 Rh2DG286500 Rh2DG286900 Rh2DG287300 Rh2DG305700 Rh2DG305900 Rh2DG306000 Rh5AG101300 Rh5BG097800 Rh5CG109900 Rh5DG096900
rosa_wichuraiana	Rw2G022360 Rw2G022400 Rw2G022410 Rw5G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	157
AdeI	CACNNNGTG	1 cut(s)	31
AluBI	AGCT	2 cut(s)	83, 224
AluI	AGCT	2 cut(s)	83, 224
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	172
AsuII	TTCGAA	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	122
BglII	AGATCT	1 cut(s)	192
BmeT110I	CYCGRG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	122
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	122
Bsp119I	TTCGAA	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	77, 149, 192
Bsp19I	CCATGG	1 cut(s)	115
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	41
BspPI	GGATC	1 cut(s)	157
BspT104I	TTCGAA	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	3 cut(s)	77, 149, 192
BssT1I	CCWWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	28
BstDSI	CCRYGG	1 cut(s)	115
BstKTI	GATC	3 cut(s)	80, 152, 195
BstMBI	GATC	3 cut(s)	77, 149, 192
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	166
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	6 cut(s)	83, 93, 98, 114, 168, 224
CviKI_1	RGCY	6 cut(s)	83, 93, 98, 114, 168, 224
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	3 cut(s)	79, 151, 194
DpnII	GATC	3 cut(s)	77, 149, 192
DraIII	CACNNNGTG	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	1 cut(s)	119
FaiI	YATR	3 cut(s)	8, 117, 144
FatI	CATG	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	119
HinfI	GANTC	2 cut(s)	51, 120
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	2 cut(s)	25, 59
Hpy188I	TCNGA	1 cut(s)	50
Hpy8I	GTNNAC	2 cut(s)	25, 59
Hpy99I	CGWCG	1 cut(s)	141
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4IV	ACGT	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	1 cut(s)	119
Kzo9I	GATC	3 cut(s)	77, 149, 192
LpnPI	CCDG	6 cut(s)	57, 75, 138, 150, 195, 234
LweI	GCATC	1 cut(s)	222
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	2 cut(s)	14, 36
MalI	GATC	3 cut(s)	79, 151, 194
MboI	GATC	3 cut(s)	77, 149, 192
MboII	GAAGA	1 cut(s)	196
MflI	RGATCY	1 cut(s)	192
MlyI	GAGTC	2 cut(s)	45, 114
MnlI	CCTC	2 cut(s)	117, 188
MseI	TTAA	1 cut(s)	241
MspA1I	CMGCKG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	3 cut(s)	77, 149, 192
NlaIII	CATG	1 cut(s)	119
NmuCI	GTSAC	2 cut(s)	14, 36
NspV	TTCGAA	1 cut(s)	233
PaeR7I	CTCGAG	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PleI	GAGTC	2 cut(s)	45, 114
PpsI	GAGTC	2 cut(s)	45, 114
PspXI	VCTCGAGB	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	192
PvuII	CAGCTG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	241
Sau3AI	GATC	3 cut(s)	77, 149, 192
SchI	GAGTC	2 cut(s)	45, 114
SetI	ASST	5 cut(s)	43, 76, 85, 226, 241
SfaNI	GCATC	1 cut(s)	222
Sfr274I	CTCGAG	1 cut(s)	122
SfuI	TTCGAA	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	122
SmlI	CTYRAG	2 cut(s)	108, 122
SmoI	CTYRAG	2 cut(s)	108, 122
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	141
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	3 cut(s)	76, 123, 233
Tru1I	TTAA	1 cut(s)	241
Tru9I	TTAA	1 cut(s)	241
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	2 cut(s)	14, 36
Tsp45I	GTSAC	2 cut(s)	14, 36
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	36
XhoI	CTCGAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.