Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001290

Physical Location & Seq

Genomic Coordinates Forward (+)

33926615 .. 33929010

Gene Structure 2396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG280300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCACCCAGTAAAGCAGAAGAGGGTTCCAGTTGGACCGAGATGTTTACACTGGAAAGCCTTACTCGAGGCCTTGGCAGATGAATTAACAATTCATTCAGTTCGTTTCTCTTCTAAGATCTCTGCTATTGATACCCGACAACATGAAGGTTCATCCCTTGCCATTGTTCACTTGGAAAATGGAACTATCATCAAAACAAAGGTTCTGATAGGGTGTGACGGTCTGCACTCGGTGGTGTCACGCTGGTTAGGACTCGGTGAATCAGTCCTTTCGGGTCGATCAGCGGTTCGTGGATTGGCTGTGTTTCCTCAAGGCCATGGACTCGACCAAAACTTCCGGCAGTACATAGGAATAGGCAGAAGAGCTGGTTTGATTCCCGTTTCTGACAAAGAAGTATTTTGGTTCTTCAGTTCCACATCTCCAGCTAAAGGTATGTTTGGAATTGTGGATACCTTTGGAATATATGGTATCAGAAGCAAAGCCTTCGATCCACTCCCAATTGCTTTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

170

Amino Acids

18.61

Weight (kDa)

9.79

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001290)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23740 FvH4_1g23750 FvH4_1g23770
malus_domestica	MD11G1231700.v1.1 MD11G1231900.v1.1
prunus_persica	Prupe.6G162100_v2.0.a1
pyrus_communis	pycom11g20520
rosa_chinensis	RchiOBHm_Chr2g0119591 RchiOBHm_Chr2g0119621 RchiOBHm_Chr2g0119641 RchiOBHm_Chr5g0013091
rosa_laevigata	RLG00000018140 RLG00000018142 RLG00000018474 RLG00000018477 RLG00000018479 RLG00000018481 RLG00000018482 RLG00000031985
rosa_multiflora	Rmu_sc0000825.1_g000006 Rmu_sc0000825.1_g000015 Rmu_sc0003158.1_g000005 Rmu_sc0003892.1_g000012 Rmu_sc0027906.1_g000001 Rmu_sc0040685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063490 Rroxscaffold_2G00124140 Rroxscaffold_2G00124230 Rroxscaffold_2G00124240 Rroxscaffold_2G00124250
rosa_rugosa	Rorug02G0222300 Rorug02G0222400 Rorug02G0222400 Rorug02G0222400 Rorug02G0222500.1 Rorug02G0223100 Rorug05G0007200
rosa_samantha	Rh2AG279800 Rh2AG280300 Rh2BG291500 Rh2BG291900 Rh2DG286500 Rh2DG286900 Rh2DG287300 Rh2DG305700 Rh2DG305900 Rh2DG306000 Rh5AG101300 Rh5BG097800 Rh5CG109900 Rh5DG096900
rosa_wichuraiana	Rw2G022360 Rw2G022400 Rw2G022410 Rw5G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	1 cut(s)	482
AcuI	CTGAAG	1 cut(s)	391
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	428
AluBI	AGCT	2 cut(s)	365, 425
AluI	AGCT	2 cut(s)	365, 425
AlwI	GGATC	1 cut(s)	482
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	2 cut(s)	69, 313
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	35
BcgI	CGANNNNNNTGC	2 cut(s)	466, 500
BciVI	GTATCC	1 cut(s)	442
BfmI	CTRYAG	1 cut(s)	509
BfuI	GTATCC	1 cut(s)	442
BglII	AGATCT	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	35
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	72, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	3 cut(s)	8, 29, 56
BseDI	CCNNGG	2 cut(s)	72, 316
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseNI	ACTGG	3 cut(s)	8, 29, 56
BsgI	GTGCAG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	71, 315
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	428
BsnI	GGCC	2 cut(s)	71, 315
BsoBI	CYCGRG	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	117, 278, 487
Bsp19I	CCATGG	1 cut(s)	316
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	2 cut(s)	71, 315
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	482
BspQI	GCTCTTC	1 cut(s)	355
BsrI	ACTGG	3 cut(s)	8, 29, 56
BssECI	CCNNGG	2 cut(s)	72, 316
BssMI	GATC	3 cut(s)	117, 278, 487
BssT1I	CCWWGG	2 cut(s)	72, 316
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	3 cut(s)	14, 115, 355
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	1 cut(s)	152
BstKTI	GATC	3 cut(s)	120, 281, 490
BstMBI	GATC	3 cut(s)	117, 278, 487
BstSFI	CTRYAG	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	2 cut(s)	71, 315
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	2 cut(s)	143, 317
CviJI	RGCY	7 cut(s)	59, 71, 299, 315, 365, 425, 482
CviKI_1	RGCY	7 cut(s)	59, 71, 299, 315, 365, 425, 482
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	3 cut(s)	119, 280, 489
DpnII	GATC	3 cut(s)	117, 278, 487
DraIII	CACNNNGTG	1 cut(s)	232
Eam1104I	CTCTTC	3 cut(s)	14, 115, 355
EarI	CTCTTC	3 cut(s)	14, 115, 355
Eco130I	CCWWGG	2 cut(s)	72, 316
Eco147I	AGGCCT	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	391
Eco88I	CYCGRG	1 cut(s)	65
EcoT14I	CCWWGG	2 cut(s)	72, 316
ErhI	CCWWGG	2 cut(s)	72, 316
FaeI	CATG	2 cut(s)	146, 320
FaiI	YATR	7 cut(s)	144, 318, 347, 434, 463, 465, 511
FatI	CATG	2 cut(s)	142, 316
FokI	GGATG	1 cut(s)	139
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	71, 315
HapII	CCGG	1 cut(s)	337
Hin1II	CATG	2 cut(s)	146, 320
HinfI	GANTC	4 cut(s)	252, 260, 321, 373
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	2 cut(s)	47, 169
Hpy188I	TCNGA	3 cut(s)	207, 385, 473
Hpy8I	GTNNAC	2 cut(s)	47, 169
HpyAV	CCTTC	2 cut(s)	140, 493
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	2 cut(s)	4, 226
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	146, 320
Kzo9I	GATC	3 cut(s)	117, 278, 487
LguI	GCTCTTC	1 cut(s)	355
LpnPI	CCDG	7 cut(s)	21, 37, 42, 229, 350, 351, 435
MaeIII	GTNAC	2 cut(s)	215, 237
MalI	GATC	3 cut(s)	119, 280, 489
MboI	GATC	3 cut(s)	117, 278, 487
MboII	GAAGA	4 cut(s)	31, 102, 372, 397
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	1 cut(s)	117
MluCI	AATT	4 cut(s)	83, 90, 441, 498
MlyI	GAGTC	2 cut(s)	246, 315
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	15, 61, 318
MseI	TTAA	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	1 cut(s)	337
MunI	CAATTG	1 cut(s)	498
NcoI	CCATGG	1 cut(s)	316
NdeII	GATC	3 cut(s)	117, 278, 487
NlaIII	CATG	2 cut(s)	146, 320
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	215, 237
PaeR7I	CTCGAG	1 cut(s)	65
PceI	AGGCCT	1 cut(s)	71
PciSI	GCTCTTC	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	260, 373
PleI	GAGTC	2 cut(s)	246, 315
PpsI	GAGTC	2 cut(s)	246, 315
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	35
PspXI	VCTCGAGB	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	117
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SapI	GCTCTTC	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	86
Sau3AI	GATC	3 cut(s)	117, 278, 487
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	2 cut(s)	246, 315
SetI	ASST	6 cut(s)	151, 204, 367, 427, 433, 455
SfcI	CTRYAG	1 cut(s)	509
Sfr274I	CTCGAG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	65
SmlI	CTYRAG	2 cut(s)	65, 309
SmoI	CTYRAG	2 cut(s)	65, 309
Sse9I	AATT	4 cut(s)	83, 90, 441, 498
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	1 cut(s)	284
StuI	AGGCCT	1 cut(s)	71
StyI	CCWWGG	2 cut(s)	72, 316
TaaI	ACNGT	1 cut(s)	221
TaqI	TCGA	4 cut(s)	66, 277, 324, 486
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	4 cut(s)	83, 90, 441, 498
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	260, 373
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	56
TseFI	GTSAC	2 cut(s)	215, 237
Tsp45I	GTSAC	2 cut(s)	215, 237
TspDTI	ATGAA	4 cut(s)	83, 96, 141, 159
TspRI	CASTG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	35
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.