Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Reverse (-)

3073811 .. 3076484

Gene Structure 2674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGACACGAAGCAGTGTAGAAGATGATGAAGATATTGGAGGACCCAGCCAACATCCTGAACCTAAGGAATCCAGTCCTGAAGAAAAAGTAAAGGAAAGCGAAGATCAAGTAGAAGAAGAAGAAGAATTTGAAGCTGACGAAGATGATGATTACTATACTGAAGGGCAAGATGAAGAGCCAAATAACGAGCCCTATGATTCCATCACATCAATCCTAGTAGTGAGAGGTAAATCTCCCAGTGGAACATGTTCCTTTGGCCACCGTTGTCGTATCATCGAGAGTTCGAGACGATTCTGGAATCAAGCACAACTTTATGTCGAAACAGCAACTATGGCTGCAAACTTGGAGAAGCATCTTCCCGTTGCGGCATTGATGATCCTTCACTATGGCGAGGTAGCCCGGATGTCGGTCTACCGAATGTATGTCGGAGGCGGGGCCTGCCATGGTCGGAGCACGGTCTACGAGGTCGTTGGTTATGCTTGGCGGGATAAAATATACATCGTATCTACAAGTTTCCTGACTGGTCTATGGGCGGAGAAGCGAAGACGACGTCGTCATAGCCGCAGCGAGTCGAGCCGAGTTCGATCGGAGCGAGCTGCCCAACGAGAAAGCCAACTCGGCGTCGGTGTAGGAAGAAGCGGCCGAGGGGGAGGAGGCGTGGAAGAGGGAGGAGGGGATATGGGGGTCGCATCAGCCGGAGGGAAGAAAGCGGGACAGACGTCGGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

244

Amino Acids

26.89

Weight (kDa)

5.06

Isoelectric Point (pI)

83.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	552
AatII	GACGTC	2 cut(s)	553, 722
AccI	GTMKAC	2 cut(s)	411, 459
AciI	CCGC	7 cut(s)	365, 432, 484, 533, 562, 639, 710
AclWI	GGATC	1 cut(s)	370
AcoI	YGGCCR	2 cut(s)	256, 640
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	2 cut(s)	99, 180
AcyI	GRCGYC	3 cut(s)	550, 621, 719
AfiI	CCNNNNNNNGG	1 cut(s)	406
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	131
AluBI	AGCT	2 cut(s)	134, 596
AluI	AGCT	2 cut(s)	134, 596
Alw21I	GWGCWC	1 cut(s)	455
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	1 cut(s)	370
AoxI	GGCC	3 cut(s)	256, 435, 640
ApeKI	GCWGC	3 cut(s)	335, 564, 596
ApoI	RAATTY	1 cut(s)	125
ArsI	GACNNNNNNTTYG	2 cut(s)	535, 567
Asp700I	GAANNNNTTC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	41, 435
AsuC2I	CCSGG	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	41
AxyI	CCTNAGG	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	550
Bbv12I	GWGCWC	1 cut(s)	455
BbvI	GCAGC	3 cut(s)	322, 576, 583
BccI	CCATC	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	215
BglI	GCCNNNNNGGC	1 cut(s)	618
BisI	GCNGC	6 cut(s)	336, 366, 562, 565, 597, 640
BlsI	GCNGC	6 cut(s)	337, 367, 563, 566, 598, 641
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	41, 435
BmiI	GGNNCC	2 cut(s)	43, 436
BmrFI	CCNGG	1 cut(s)	400
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	2 cut(s)	361, 698
BmuI	ACTGGG	1 cut(s)	231
BoxI	GACNNNNGTC	1 cut(s)	718
BpiI	GAAGAC	1 cut(s)	550
BpuMI	CCSGG	1 cut(s)	400
BsaHI	GRCGYC	3 cut(s)	550, 621, 719
BsaJI	CCNNGG	2 cut(s)	442, 643
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	3 cut(s)	72, 237, 526
Bse21I	CCTNAGG	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	442, 643
BseGI	GGATG	2 cut(s)	52, 408
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseNI	ACTGG	3 cut(s)	72, 237, 526
BseRI	GAGGAG	2 cut(s)	666, 684
BseX3I	CGGCCG	1 cut(s)	640
BseXI	GCAGC	3 cut(s)	322, 576, 583
BseYI	CCCAGC	1 cut(s)	44
Bsh1285I	CGRYCG	2 cut(s)	587, 643
BshFI	GGCC	3 cut(s)	258, 437, 642
BsiEI	CGRYCG	2 cut(s)	587, 643
BsiHKAI	GWGCWC	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	400, 696
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	1 cut(s)	280
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	726
BsnI	GGCC	3 cut(s)	258, 437, 642
Bsp1286I	GDGCHC	2 cut(s)	192, 455
Bsp143I	GATC	3 cut(s)	103, 375, 584
Bsp19I	CCATGG	1 cut(s)	442
BspACI	CCGC	7 cut(s)	365, 432, 484, 533, 562, 639, 710
BspANI	GGCC	3 cut(s)	258, 437, 642
BspLI	GGNNCC	2 cut(s)	43, 436
BspPI	GGATC	1 cut(s)	370
BspQI	GCTCTTC	1 cut(s)	168
BsrI	ACTGG	3 cut(s)	72, 237, 526
BssECI	CCNNGG	2 cut(s)	442, 643
BssMI	GATC	3 cut(s)	103, 375, 584
BssNI	GRCGYC	3 cut(s)	550, 621, 719
BssT1I	CCWWGG	1 cut(s)	442
Bst4CI	ACNGT	2 cut(s)	263, 457
Bst6I	CTCTTC	2 cut(s)	168, 657
BstACI	GRCGYC	3 cut(s)	550, 621, 719
BstC8I	GCNNGC	2 cut(s)	439, 594
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	442
BstF5I	GGATG	2 cut(s)	52, 408
BstKTI	GATC	3 cut(s)	106, 378, 587
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	3 cut(s)	103, 375, 584
BstMCI	CGRYCG	2 cut(s)	587, 643
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 438, 573, 618
BstNSI	RCATGY	1 cut(s)	249
BstPAI	GACNNNNGTC	1 cut(s)	718
BstSCI	CCNGG	1 cut(s)	398
BstV1I	GCAGC	3 cut(s)	322, 576, 583
BstV2I	GAAGAC	1 cut(s)	550
BstZI	CGGCCG	1 cut(s)	640
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	3 cut(s)	258, 437, 642
BtgI	CCRYGG	1 cut(s)	442
BtsCI	GGATG	2 cut(s)	52, 408
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 244
Cac8I	GCNNGC	2 cut(s)	439, 594
Cfr13I	GGNCC	2 cut(s)	41, 435
CseI	GACGC	1 cut(s)	610
CviAII	CATG	2 cut(s)	246, 443
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	3 cut(s)	105, 377, 586
DpnII	GATC	3 cut(s)	103, 375, 584
DrdI	GACNNNNNNGTC	1 cut(s)	552
DseDI	GACNNNNNNGTC	1 cut(s)	552
EaeI	YGGCCR	2 cut(s)	256, 640
EagI	CGGCCG	1 cut(s)	640
Eam1104I	CTCTTC	2 cut(s)	168, 657
EarI	CTCTTC	2 cut(s)	168, 657
EciI	GGCGGA	1 cut(s)	548
EclXI	CGGCCG	1 cut(s)	640
Eco130I	CCWWGG	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	41
Eco52I	CGGCCG	1 cut(s)	640
Eco57I	CTGAAG	2 cut(s)	99, 180
Eco81I	CCTNAGG	1 cut(s)	63
EcoO109I	RGGNCCY	2 cut(s)	41, 435
EcoT14I	CCWWGG	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	442
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	2 cut(s)	249, 446
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	2 cut(s)	245, 442
FauI	CCCGC	3 cut(s)	425, 477, 703
FblI	GTMKAC	2 cut(s)	411, 459
Fnu4HI	GCNGC	6 cut(s)	336, 366, 562, 565, 597, 640
FokI	GGATG	2 cut(s)	39, 415
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	6 cut(s)	336, 366, 562, 565, 597, 640
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	6 cut(s)	336, 366, 562, 565, 597, 640
GsaI	CCCAGC	1 cut(s)	48
HaeIII	GGCC	3 cut(s)	258, 437, 642
HapII	CCGG	2 cut(s)	400, 696
HgaI	GACGC	1 cut(s)	610
Hin1I	GRCGYC	3 cut(s)	550, 621, 719
Hin1II	CATG	2 cut(s)	249, 446
HinfI	GANTC	5 cut(s)	68, 197, 291, 298, 569
HpaII	CCGG	2 cut(s)	400, 696
Hpy166II	GTNNAC	2 cut(s)	412, 460
Hpy188I	TCNGA	4 cut(s)	428, 450, 589, 724
Hpy188III	TCNNGA	6 cut(s)	56, 77, 277, 285, 295, 517
Hpy8I	GTNNAC	2 cut(s)	412, 460
Hpy99I	CGWCG	4 cut(s)	552, 555, 626, 724
HpyAV	CCTTC	2 cut(s)	155, 389
HpyCH4III	ACNGT	2 cut(s)	263, 457
HpyCH4IV	ACGT	2 cut(s)	550, 719
HpyCH4V	TGCA	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 438, 573, 618
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	2 cut(s)	550, 719
Hsp92I	GRCGYC	3 cut(s)	550, 621, 719
Hsp92II	CATG	2 cut(s)	249, 446
Kzo9I	GATC	3 cut(s)	103, 375, 584
LguI	GCTCTTC	1 cut(s)	168
LmnI	GCTCC	2 cut(s)	450, 589
Lsp1109I	GCAGC	3 cut(s)	322, 576, 583
LweI	GCATC	2 cut(s)	361, 698
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	2 cut(s)	550, 719
MalI	GATC	3 cut(s)	105, 377, 586
MboI	GATC	3 cut(s)	103, 375, 584
MhlI	GDGCHC	2 cut(s)	192, 455
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	1 cut(s)	125
MluNI	TGGCCA	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	3 cut(s)	406, 428, 702
Mox20I	TGGCCA	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	247
MscI	TGGCCA	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	258
MspI	CCGG	2 cut(s)	400, 696
MspR9I	CCNGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	4 cut(s)	332, 438, 573, 618
NciI	CCSGG	1 cut(s)	400
NcoI	CCATGG	1 cut(s)	442
NdeII	GATC	3 cut(s)	103, 375, 584
NlaIII	CATG	2 cut(s)	249, 446
NlaIV	GGNNCC	2 cut(s)	43, 436
NmeAIII	GCCGAG	3 cut(s)	597, 602, 668
NspI	RCATGY	1 cut(s)	249
PciI	ACATGT	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	589
PdmI	GAANNNNTTC	1 cut(s)	247
PfeI	GAWTC	4 cut(s)	68, 197, 291, 298
PflFI	GACNNNGTC	2 cut(s)	549, 552
PkrI	GCNGC	6 cut(s)	337, 367, 563, 566, 598, 641
Ple19I	CGATCG	1 cut(s)	587
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
PpuMI	RGGWCCY	1 cut(s)	41
PscI	ACATGT	1 cut(s)	245
PshAI	GACNNNNGTC	1 cut(s)	718
Psp5II	RGGWCCY	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	43, 436
PspPI	GGNCC	2 cut(s)	41, 435
PspPPI	RGGWCCY	1 cut(s)	41
PsyI	GACNNNGTC	2 cut(s)	549, 552
PvuI	CGATCG	1 cut(s)	587
SapI	GCTCTTC	1 cut(s)	168
SatI	GCNGC	6 cut(s)	336, 366, 562, 565, 597, 640
Sau3AI	GATC	3 cut(s)	103, 375, 584
Sau96I	GGNCC	2 cut(s)	41, 435
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	2 cut(s)	192, 455
SetI	ASST	8 cut(s)	64, 136, 229, 396, 468, 553, 598, 722
SfaNI	GCATC	2 cut(s)	361, 698
SinI	GGWCC	1 cut(s)	41
Sse9I	AATT	1 cut(s)	125
SsiI	CCGC	7 cut(s)	365, 432, 484, 533, 562, 639, 710
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	2 cut(s)	263, 457
TaiI	ACGT	2 cut(s)	553, 722
TaqI	TCGA	5 cut(s)	276, 284, 318, 572, 583
TaqII	GACCGA	1 cut(s)	397
TasI	AATT	1 cut(s)	125
TauI	GCSGC	3 cut(s)	368, 564, 642
TfiI	GAWTC	4 cut(s)	68, 197, 291, 298
TscAI	CASTG	2 cut(s)	19, 244
TseI	GCWGC	3 cut(s)	335, 564, 596
TspDTI	ATGAA	2 cut(s)	42, 186
TspRI	CASTG	2 cut(s)	19, 244
Tth111I	GACNNNGTC	2 cut(s)	549, 552
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	1 cut(s)	249
XmiI	GTMKAC	2 cut(s)	411, 459
XmnI	GAANNNNTTC	1 cut(s)	247
XspI	CTAG	1 cut(s)	215
ZraI	GACGTC	2 cut(s)	551, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.